Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      --------->At4g35610                    --------->GLK1(1)                    <---------At4g35610                    <---------ZAT2                  <------NtERF2                    --------->ANAC58                 --------->LBD16                   --------->ANAC58          --------->YAB1 ---------->GT1 <----------CDC5                    --------->ANAC46       --------->GLK1(1) -------ANAC46 <---------LBD16                  --------->ZAT18           <---------GLK1(1) --ATERF1(1)   --------->LBD16           --------->ZAT14        <---------ANAC55(2) >ANAC46     <---------LBD16             <---------ZAT14        --------->ANAC55(2)      >>>>>>>>>TBF1   ccttgtaaaaaaaaccgcgcggagctcattagagcatggacagagcagagtgcaagacacatcaacaggtaatcggaaatcaaaattcgaagaagaagtt  18625300                                                          <---------ZAT18                                                          --------->ZAT18                                                          ------------>CBF                                                 <---------ARR14(2)                                                 --------->ARR14(2)                                                 --------->ARR11(3)                        --------->ARR14(2)                                  ----------->GT1<---------ARR11(3)             <---------ANAC58                                 <------ZmHOX2a(1)  <----------DOF2             <---------ANAC58                                ----------->GT1  <---------ARR11(1)             <---------ANAC46                       --------->LBD16          <---------CCA1(2)        ------------>CBF  --------->GLK1(2)                   <---------ARR14(2)           --------->GLK1(1)       >>>>>>>>>>>>>>>>>LFY                   --------->ARR14(2)           <---------GLK1(1)   <---------GLK1(2)      <---------ARR14(2)                  <---------CCA1(2)    --------->YAB1     *TSS --------->YAB1<---------ATHB12   <----              ------->TEIL >>>>>>>>>TBF1  --------->MYB52(1)   --------->MYB52(1)          <---------ARR11(3)   tgtggaatcatctatgaatcgtatccgaagaagaaggagaaaaataacgcatatctttagggcaataacagtttctccaatggctcgtagcaaaatctgt  18625400                                                                                                <----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                            ------>ZmHOX2a(2)                                                                                      ------->MYC4                                                                                      <-------PIF5                                                                                      <-------MYC2                                                                                      <-------MYC4                                                                                      ------->MYC3                                                                                      <-------MYC3                                                                                      ------->MYC2                                                                                      ------->PIF5                                                                                     --------->O2                                                                                     ================                                                                                     <---------ANAC55(2)                                                                                     <---------ANAC46                   <------------CBF                                                  <---------O2             ----------->GT1                                                         --------->TGA1a       ---------->DOF2                                                  <---------ZAT14   <---------ARR14(2)    --------->MYB52(1)                                                  --------->ZAT14--------->ALFIN1 --------->At4g35610                <-------TEIL                      <---------LBD16<---------TGA1a- -----------------WRI1       >>>>>>>>>TBF1                   <---------MYB52(1) ----------->HVH21   -   agaagctaacaaagttagaaaaattgcagaagaagaagttcattttcttctcttcttacttctgtttttttctctggactgtttgacacgtggatcgaac  18625500                                  <---------AHL20(2)  ---------->ARF1              <---------AHL20(1) -----HSFB2a(1)                --------->AHL20(1) ---->HSFC1(2)                --------->AHL20(2) -----HSFC1(2)              --------->AHL20(2) ---->HSFB2a(1)           --------->AHL20(2) =========bZIP_bZIP   --------->AHL20(2)        ------>MYB46(1) -------->O2          <---------AHL20(2)        ------>MYB83 <-----------HVH21 -------->TGA1a      --------->AHL20(2)      --------->DEAR3(2)                   ----------->GT1 <--   cctcgtctccccctctacggctattaaaaaaaatatataaaaactaaaccgactgatattcagagtcacttcgattcaattgaatgggaattttggttta  18625600              --------->ARR14(2)              <---------ARR14(2)            <------MYB46(1)            <------MYB83            <---------DEAR3(2)           --------->MYB59                                               <---------ALFIN1         <---------MYB52(1)                                           <---------ALFIN1       <---------DEAR3(2)                                             --------->DEAR3(1)       <------MYB83                                                  ------>MYB46(1)       <------MYB46(1)                                             ------->GAMYB      --------->MYB59                         <---------HSFC1(2)   --------->AtMYB61    <---------MYB52(1)                        --------->HSFB2a(1)  <---------ALFIN1  <---------DEAR3(2)                          --------->HSFC1(2)  --------->MYB46(3)  <---------MYB46(3)          --------->GLK1(1)                 <<<<<<<<<GT-1                 *TSS <---------DEAR3(1)           <---------GLK1(1)      <------------CBF------>MYB83          <---------ANAC58 <---------DREB2C(2)   <---------GLK1(1)      <---------HSFB2a(1) <---------MYB55(2)       <---------ANAC58 ---------RAV1(1) <----------DOF2         ----------->GT1       <-----------GT1       <----------DOF2   atgtcggttcggttcggttcctttgaaatctgaaatctgaaaactggaaaattcgaattgaagtattaaccaccccctctctctctctcttttgcttact  18625700                                                                         <---------ANAC58                                                                         <---------ANAC58                                                                   <-------TEIL                                                                  <------ZmHOX2a(2)                                                                  ======================HOX2a_HOX2a                                                                 --------->AGP1                                                                 --------->ARR11(3)                                 --------->ARR11(3)              <---------ARR11(3)                --------->At4g35610                              --------->ARR14(2)                <---------At4g35610------>ZmHOX2a(2)             <---------ARR14(2)            <---------WOX13(1)   <---------ARR11(3)             --------->GLK1(1)          --------->ATHB12    <---------WOX13(1)            --------->ANAC58         <---------YAB1      <---------ANAC58               --------->ANAC58                   ------         --------->ICU4      <---------ANAC58          --------->At4g35610                  ---------       --------->ANAC55(2)   <---------ANAC46          <---------At4g35610       ------>ZmHOX2a(1) --     <-----------GT1    <---------ICU4         <----------DOF2  --------->At4g35610         <--------   tctcaattcacatgattgagctcaaaacattgcttgatcttccattacactttcttcatctcaagcagatccattgcttactcctaacttctccgatatt  18625800                                                     <---------ALFIN1                                                    --------->LBD16                                                    ------>NtERF2                                                   --------->RAP2.3(2)                                                   --------->ANAC58                                                   --------->DEAR3(1)                                                   --------->RRTF1(2)                                                   --------->RRTF1(3)                                                   --------->RAP2.3(3)                                                   --------->RAP2.6(2)                                                   --------->ANAC58                                                   --------->ANAC46                                                  --------->RRTF1(1)                                                 <---------ATERF1(1)                                                 --------->ABI4(1)                                                 ------>NtERF2                                                --------->DEAR3(1)                                                <---------ALFIN1                                               --------->MYB46(3)                                               --------->ORA47(2)                                               --------->DEAR4(2)                                               --------->ATERF1(1)                                               --------->DEAR3(2)                         --------->ANAC58     <---------ATERF1(1)                         --------->O2    --------->ZAT2                         --------->ANAC55(2) <---------ALFIN1                         <---------ANAC55(2)--------->ZAT14                         --------->TGA1a <---------At4g35610               ---------->ID1                         <---------O2    <---------ZAT2              --------->ANAC58                         --------->ANAC58--------->At4g35610      <---------MYB52(1)                ===================bZIP_DOF <---------ZAT14      --------->At4g35610    --------->ANAC46     <---------TGA1a<-----------RAV1(1)     --------->ANAC46 --->GLK1(2) ------>ZmHOX2a(2)        <---------At4g35610    <---------ARR14(2) >ARR14(2)  <------ZmHOX2a(2)        <---------DEAR3(1)      --------->ARR14(2) ------->ZAT14  <----------DOF2    <-----------HVH21<------NtERF2<---------At4g35610      <---------At4g35610 -MYB52(1) <---------ARR11(3)     --------->ANAC46--------->RAP2.3(1)--------->ANAC58     --------->At4g35610   ctatactcgtcgcgatctctttctctcacgtcttctccgtcgctgctgcaccgccgcaactcaattccgctacgctcgtcgtttattatgtcaactccaa  18625900                                                                           <---------ANAC58                                                                      <---------ICU4                                                                     <---------YAB1                <-                                              <------NtERF2      <-------GAMYB                     --                                             ------>NtERF2      <---------MYB46(3)            <------                                             --------->LBD16    <---------DEAR3(2)            -------                                            <---------ANAC46   <---------DEAR3(1)            <-------                               <-----------HVH21              <---------MYB52(1)             <-------                           --------------------->WRI1        <-----------HVH21       <-----------TGA1                          --------->ATHB12 <---------LBD16  --------->DEAR3(1)       <-----------HVH21                    --------->ARR14(1)    --------->LBD16   ------->GAMYB  <---------ANAC58 <--------                   <---------GLK1(2)      ------>NtERF2    --------->DEAR3(2)       --------->YAB1 --                   --------->ARR14(2)    <---------DEAR3(1)<------------AtMYB77<---------ANAC58<-----                   <---------ARR14(2)   <---------LBD16    --------->MYB46(3)  <---------ANAC58------   actctgagcattcaactatgggattcgctcattggtcacttctccggcgggattactctcaaccgtcggttatcatttcttgcttatcgtcatatgcggc  18626000                           <---------ARR14(2)                           --------->ARR14(2)                         ------->MYC3                         <-------MYC3                        ============================bZIP_DOF                        <---------TGA1a                        <---------O2                        --------->TGA1a                        --------->ANAC58                    ----------->RAV1(1)                    <---------ALFIN1                   <------NtERF2                  <---------ATERF1(1)                  <---------RAP2.6(3)                  ------>NtERF2                 >>>>>>>>>AtERF-2                 --------->ANAC46                 >>>>>>>>>AtERF-3                 >>>>>>>>>AtERF-4                 >>>>>>>>>AtERF-5                 --------->RAP2.6(2)      --------->TGA2(2) --------->ANAC46      <------NtERF2----------->HVH21     ------>NtERF2<-----------HVH21     <-----------TGA1   --------->ANAC58     <-----------HVH21<---------ALFIN1    <---------bZIP60(1) --------->O2    --------->bZIP60(1) --------->ANAC55(1) --------ARR14(2)--------->DEAR3(1) ------->ARR14(2)--------->RAP2.3(2) ---RAP2.3(1)    <---------ATERF1(2) -->LBD16        --------->ATERF1(2) --DEAR3(1)      >>>>>>>>>AtERF-1 --RAP2.6(2)    --------->MYB46(3)       ---------->DOF2 -LBD16         --------->ERF1 ------>ZmHOX2a(1)                                               ------ ------->MYB52(1)--------->RAP2.3(3)   --------->HSFB2a(2)                                     ------ -NtERF2        --------->RAP2.3(1)    <---------HSFB2a(2)                                 <---------CCA1(2) >NtERF2       <---------ATERF1(1)<---------At4g35610                             <-------TEIL-------   gaaacggcgtcatccctagccgccacacgtttcctccgcttctcaaagcggttttcaaactgagagactcgaacccgtttcagtttcatgctcatatcgt  18626100                     ------>ZmHOX2a(1)                   ==================HOX2a_HOX2a                   ------>ZmHOX2a(2)                  <------ZmHOX2a(2)           --------->ARR14(2)           <---------ARR14(2)   <---------GLK1(1)           <---------GLK1(2)    --------->GLK1(1)          <---------LBD16         <------MYB46(1)      <------ZmHOX2a(1)    <---------YAB1         <------MYB83<----------DOF2        <---------ANAC58                                     <---       <--------P ===================HOX2a_HOX2a  --------->KAN4(2)                              ---- --->TOE2(3)     --------->ARR14(2)         <---------ANAC58                                     <--- --->TOE1(3)     <---------ARR14(2)  <---------MYB52(1)  <---------AGP1      <---------AtLEC2    ---- ---->GT1----------->ARR10  >>>>>>>GRF7     <---------ANAC46      --------->KAN4(2)   <----------DOF2   taaattcgggttggattcggatccttttgtcaggaattcgttgatttcgggttattctagttctgggttattcgattttgcaagtcgtctttttgatgga  18626200  Previous    Next  AGI:  At1g50260.1    Description:  NTMC2T5.1/NTMC2TYPE5.1. similar to NTMC2T5.2/NTMC2TYPE5.2 [Arabidopsis thaliana] (TAIR:AT3G19830.1); similar to C2 domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22937.1); similar to hypothetical protein OsI_009343 [Oryza sativa (indica cultivar-group)] (GB:EAY88110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15404.1); contains InterPro domain C2 calcium-dependent membrane targeting (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973) Range:  from: 18621261    to: 18625358    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g50270.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN77435.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 18625694    to: 18627918    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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