Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       --------->ATHB12                ------>ZmHOX2a(2)                ===================HOX2a_HOX2a                =========================HOX2a_HOX2a               ====================HOX2a_HOX2a               <------ZmHOX2a(2)               ==========================HOX2a_HOX2a               --------->CCA1(2)               --------->ARR14(1)              --------->ARR14(2)              <---------ARR11(3)              <---------ARR14(2)              --------->ARR11(3)             --------->GLK1(1)             <---------GLK1(1)        <---------HSFB2a(2)                                                        <---------ANAC58        --------->HSFB2a(2)                                                        <---------ANAC58     ------>ZmHOX2a(1)      <------ZmHOX2a(1)                               <------NtERF2     =================HOX2a_HOX2a            --------->ARR11(3)           <---------ANAC58     ==================HOX2a_HOX2a        --------->ANAC55(2)             <---------ANAC58        ---   ------>ZmHOX2a(2)<---------ATHB12  <----------DOF2                     <---------ANAC46       <---   ================================HOX2a_HOX2a                         <---------DEAR3(1) <---------ZAT2 ---ALFIN1  ----------->ARR10     <------ZmHOX2a(1)   <---------YAB1  --------->ATERF1(1) --------->ZAT2   tgtgatccttctgggagatccgatgatttaggactaggagccttaagtatctcgttctgaatgaacaatggcgatggcgtcgatggcttcacagcttgag  18620300                                 --------->ANAC46                              <---------ZAT18       <---------ANAC46               --------->At4g35610                          <-------TEIL   ---------->DOF2                        --------->At4g35610           --------->MYB52(1) --------->ZAT18  --------->MYB52(1)               <---------At4g35610      <----------ID1--------->ZAT2    <---------At4g35610              ----------->GT1 ------>GLK1(2)     <---------ZAT2 --------->ZAT14 <------NtERF2     --------->ARR11(3)<---------TOE1(3) ------GLK1(2)     --------->GLK1(2)  --------->At4g35610            <---------ARR11(3)<---------TOE2(3)   attctataacgacagacggagaagctggttcgtccactacagctaaagctagcggcgaagatgaaattgaagatagtagaatagctgctaaggctacttg  18620400                                  --------->HSFB2a(1)                                  <---------HSFC1(2)                     --------->ANAC58                    <-----------GT1 <-----------GT1           <------MYB83                <---------ANAC46  --------->HSFC1(2)          <------MYB46(1)            <---------ARR14(2)    <---------HSFB2a(1)        --------->MYB59         <------ZmHOX2a(1)            --------->ARR14(2)   --------->ARR14(2)      --------->ATHB12--------->ANAC58     -------         <---------ANAC46        <---------ARR14(2)<------ZmHOX2a(2)    <---------LBD16 ---------->DOF2   cgacgagaatggcgaattgggtttaccatttggcgaattttcgtcttgagacgatcgagtgatttggtatttagcacgggagacgaaggagaaagggaaa  18620500                                                  ------>ZmHOX2a(1)                                                 --------->TOE1(2)                                        --------->CCA1(2)                       <---------MYB46(3)      <------ZmHOX2a(2)                      --------->ALFIN1--------->YAB1                                     --------->ANAC58             <----------DOF2         <---------YAB1                                      --------->ANAC58           <---------MYB46(3)     --------->ICU4------>ZmHOX2a(2)                        --------->ANAC46          <---------AtMYB61       --------->GLK1(2)                          --------->ICU4       <-----------RAV1(1) <---------At4g35610<---------ARR14(2)         --------->TOE1(2)         <- --->DOF2<---------MYB52(1)--------->At4g35610--------->ARR14(2)   >>>>>>>>>TBF1--------->ICU4  -----   gagggttttctggtggttttaggggtgggagatgagattatgatatgggatcctaagaagaaatttgaagaagaacgtagtaatgagttagaagccattg  18620600                                                                                               ======                                                                                               ======                                                                                               ------                                                                                              =======                                                                                              <------ZmHOX2a(2)                                                                                              =======                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                                  --------->ALFIN1                                                                                 <-------MYC3--------  --------->At4g35610                                                            ------->MYC3--------  <---------ZAT2                                                                <---------ANAC46  --------->ZAT2<<<<<<<<<TBF1                                                   <---------O2 <-------  <---------At4g35610                                                          <--------------------- --------At4g35610                                  <---------YAB1   <---------MYB52(2)      <------- ----->DOF2  <<<<<<<<<TBF1    ----------->GT1   <---------GLK1(1)--------->At4g35610        <------ZmHOX2a(1)   aagcagctctgtttcttcttcttcgtcaagacttgtcaaaattcgaattgaattctgagagagaagaagctacaaacgagaaacgtggaacaaaggatct  18620700        <---------TOE2(3)        <---------TOE1(3) ======================HOX2a_HOX2a ================HOX2a_HOX2a >ZmHOX2a(2) ================HOX2a_HOX2a ======================HOX2a_HOX2a --ARR14(3)                    *TSS                                              <---------DOF5.7(2) ----ARR10<------ZmHOX2a(1)  --------->ANAC58                         --------->ARR14(2) ->ARR14(3)                  --------->ANAC58              --------->MYB52(2)  <---------MYB52(1) ->ARR11(3)                --------->At4g35610           <---------MYB52(1)    --------->DOF5.7(2) ->ARR14(2)             --------->At4g35610      <----------DOF2      <---------ARR14(2) --ARR14(2)             <---------At4g35610      ------>ZmHOX2a(1)   --------->GLK1(1)            --- --TaNAC69(2)        ---------->DOF2     --------->HSFB2a(2)         <---------CCA1(2)           <--- --ARR11(3)     <------ZmHOX2a(1)        <---------HSFB2a(2)     --------->TOE2(3)      ------>ZmHOX2a(2)   tctggtttttaaggaagaggagattaagcagaagccatgacttctcgagtcctttctacgtttgctacctcatatccactcgttaactgatcgcaaaatg  18620800                <---------AHL20(2)               <---------AHL20(1)               <---------AHL20(2)               --------->AHL20(1)               --------->AHL20(2)                          <------MYB83                   <---------MYB52(1)            <---------AHL20(2)                             ----------->GT1              <------MYB83            --------->AHL20(2)                            --------->MYB59               <------MYB46(1)           <---------AHL20(1)                     ----------->HVH21                    --------->MYB59           <---------AHL20(2)                     <---------SPL7             --------->AHL20(2)       --------->AHL20(1)                        --------->ETT(1)            <---------AHL20(2)       <---------AHL20(2)                      <-----------HVH21            <---------AHL20(2)       --------->AHL20(2)             <----------DOF2   <---------MYB52(1)  --------->AHL20(1)      --------->AHL20(2)  <---------ARR14(2)  <---------MYB46(3)            <---------AHL20(1) -------->RAV1(1)         --------->ARR14(2) <---------ZAT6<------MYB46(1)  --------->AHL20(2) -------ID1--------->AHL20(2)----------->GT1 <---------AtMYB61 <---------AHL20(2)    <---------MYB52(1)   ccacaaaaattaattaatttaatgtgcaaattcgaaaaaactttgtagtggtcggacagttcggtttaattttaaaaatttaattcagttcggtttggat  18620900                                 --------->ZAT14                                <<<<<<<ZML2                           -------->P                           ------>MYB83                           ------>MYB46(1)                           ==============================================MYC_MYB                         <---------MYB111(2)                   <---------TGA1a                         <---------MYB111(1)                   <---------ANAC58              <-------                         --------->AtMYB61                     <---------ANAC58              --------                        --------->MYB46(3)                     --------->TGA1a               --------                       ------>NtERF2                 ------->GAMYB                           --------                      <---------ALFIN1               ====================MYC_MYB            ---------       --------->ARR14(2)<---------MYB55(2)       ----------->RAV1(1)    <-------TEIL       <--------       <---------ARR14(2)--------->MYB46(3)    --------->TOE2(3)      --------->At4g35610 <---------ICU4     --------->LBD16  --------->ANAC46      --------->ANAC58   <---------O2         --------->TOE1(3)   <---------LBD16   --------->MYB46(3)     --------->ANAC58  ------->TEIL          --------->TOE2(3)   tatgttccggttcggacaacttccccaccaactagaacagtcttgtaagcctcaacagaacatggacgtgagagcttcattcaataccataaccattatt  18621000                                           --------->GLK1(2)                                ----------->HVH21                                --------->DEAR3(1)                               <------NtERF2                               --------->RAP2.3(1)                              <---------RAP2.3(1)                              <---------ATERF1(1)                             <---------DEAR3(1) --ICU4                     <---------At4g35610                                 <------ZmHOX2a(2) >ATHB1                     --------->At4g35610                          <---------DAG2 ->ATHB51              <---------GLK1(1)<---------MYB52(2)               <----------DOF2 ->ATHB12       <------ZmHOX2a(2) <------NtERF2     <---------TOE2(2)   <---------DAG2 >ICU4         <---------ARR11(3)------>NtERF2 <-----------HVH21   <---------ATERF1(1)              < -YAB1         --------->ARR11(3)----------->RAV1(1)<---------TOE1(2)<---------ALFIN1     <----------DOF2   gagtctgccatcagtgagatcatggaattcagcggcgacacaactaatctgtcccatgttaacaagaggctccaccttttcgatcagtctatctttgtca  18621100                                                                    ------->TEIL                                                                 <---------MYB52(2)                                                                 --------->ANAC58                                                                 --------->ANAC46                                                                 --------->ANAC58                                                                --------->LBD16                                                          <---------HSFC1(2)                                                          --------->HSFC1(2)               ------>MYB83                                      --------->DAG2      <---------HSFB2a(1)              ------>MYB46(1)                                     --------->MYB52(1)   --------->HSFB2a(1)            --------->AtMYB61                                  --------->YAB1          <------MYB46(1)          ------>ZmHOX2a(1)             <---------ICU4      ----------------->AG     <------MYB83    <---------ARR11(3)             --------->YAB1  --------->YAB1               <---------MYB46(3)  <---------At4g35610           --------->GLK1(2)<<<<<<<<<ARR1              <------ZmHOX2a(1)  --------->ARR14(2)   ------ ----------DOF2             <<<<<<<<<ARR2            <---------TOE2(3)    <---------ARR14(2) --------   aactttatttgagaatcatgaaataccacaatcttaccataagggaatggaaatgaaggatggttccacgaaccaagttctgctcctactaccaatccta  18621200  Previous    Next  AGI:  At1g50250.1    Description:  FTSH1 (FtsH protease 1); ATP-dependent peptidase/ ATPase/ metallopeptidase. Identical to Cell division protease ftsH homolog 1, chloroplast precursor (FTSH1) [Arabidopsis Thaliana] (GB:Q39102;GB:Q9SX43); similar to VAR1 (VARIEGATED 1), ATP-dependent peptidase/ ATPase/ metallopeptidase [Arabidopsis thaliana] (TAIR:AT5G42270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62015.1); similar to Cell division protease ftsH homolog, chloroplast precursor (DS9) (GB:O82150); similar to FtsH-like protein precursor [Solanum lycopersicum] (GB:AAQ93011.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains Range:  from: 18617877    to: 18620731    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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