Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         ------>ZmHOX2a(2)                                                            <------NtERF2                          ----------->GT1               <-----------HVH21                     <---------YAB1            --------->ARR14(2)    --------->ARR11(3) ---ZAT14          --------->YAB1             ================================HOX2a_HOX2a          <- >REM1(2)         <---------ATHB12            <------ZmHOX2a(1)      <---------ARR11(3)          ---- -ZAT14           --------->ICU4          --------->TOE1(2)<------NtERF2<----------DOF2    ------->TEIL >ZAT14           <---------YAB1       --------->MYB52(1)  <---------LBD16    <---------ETT(1)<------   ctgaaattgcagatagaacaatgataatatgttatatcaaaaaacgaaggatagtctgggtcgcggtatgtgatctttttccgacaagagttgcatcttt  18594100                                                          <---------ANAC58                                                          <---------ANAC46                                                          <---------ANAC55(1)                                                          <---------ANAC58                                                          <---------ANAC55(2)                                                          --------->ANAC55(2)                                                      --------->KAN4(2)                                                     <---------GLK1(1)                                                     <---------KAN4(1)                                                     <----------TaMYB80                                                    <---------ARR14(2)                                               <---------AtLEC2                   <---------LBD16        <---------At4g35610                <---------ANAC58    <----------DOF2   <---------LBD16        ----------->RAV1(2)                <---------ANAC58--------->LBD16   <<<<<<<<<SARD1        --------->At4g35610  --------->At4g35610    --------->ARR11(3)       <<<<<<<<<CBP60g --------YAB1                <---------At4g35610  ----------->GT1--------->MYB52(1)           ------- ----->YAB1            <<<<<<<<<TBF1     <---------YAB1--------->GLK1(2)    ------>MYB46(1)   <------ ----DOF2         --------->KAN4(2)  --------->YAB1 --------->ARR14(2)      ------>MYB83------>ZmHOX2a(2)   tatgattcccatctgaagcacattcttcttcatctccaaacatatgcttgtatggatattccgtgcttaacagaaaccaaatttcagggatcgcagagct  18594200                                                                                ------->GAMYB                                                                               <---------MYB111(2)                                                                           <---------MYB52(2)                                                                          --------->ANAC55(1)                                                                          --------->ANAC58                                                                          ----------->GT1                                                                          --------->ANAC55(2)                                                                          <---------ANAC55(2)           ------>ZmHOX2a(2)                                              --------->ANAC46         <---------ARR11(3)                --------->ALFIN1    --------->HSFB2a(2)  <----------DOF2         --------->ARR11(3)              <---------ANAC46      <---------HSFB2a(2) --------->TOE2(3)       <---------YAB1                    <---------bZIP60(2)  <---------LBD16  --------->MYB46(3)   <---------GLK1(2)               <---------MYB46(3)<---------MYB46(3)   --------->ANAC58 -->At4g35610                     --------->ALFIN1  --------->ALFIN1<------ZmHOX2a(1)       <-------- ---At4g35610       --------->ALFIN1    <---------AtMYB61  <---------GLK1(1) <-----------GT1---------   aacaagattatgatctaagaaggtgagggtgagagggtggatgaggtggaaagggtgtttgatttctggaggaaacaagtaacaacctttgtggaattcc  18594300                                                                                                 ----                                                                               --------->At4g35610                                      >>>>>>>>>>>>>>>>>LFY          <-------TEIL                 <---                                  <----------TaMYB80             --------->GLK1(1)     <------ZmHOX2a(2)                               ------>NtERF2                     --------->At4g35610<---------MYB46(3)                              --------->ANAC46                 <------ZmHOX2a(1)<---------DEAR3(1)                              --------->ANAC58          <----------DOF2--------->MYB52(1)       <----     --------->ANAC46       <---------ALFIN1<---------ZAT14    ===============================HOX2a_HOX2a --------->YAB1            --------->MYB46(3)   <-----------RAV1(1)--------->AtLEC2--------->ALFIN1 -GLK1(1)                <---------ZAT18    --------->ZAT14 <-----------RAV1(2)<---------At4g35610<-- >GLK1(1)       --------->YAB1--------->ANAC58  ========================RAV<-----------HVH21  <------   aaatcacaagtagcacaatagtaatagtacccacgcctattcccagtgtattgttggcctttgcaggagatgcaaacggtgagcggtggatcaaatcgtc  18594400                                                         <---------ANAC58                                --------->ANAC46         <---------ANAC58                                --------->ANAC58     <---------ANAC58 -->NtERF2                      --------->ANAC58     <---------ANAC58 ------DEAR3(2)        <------ZmHOX2a(2)        <---------DAG2                                    <-- -----DEAR3(1)        <---------ARR11(3)   <---------ANAC58                          <---------YAB1 ----NtERF2           <---------AGP1       <---------ANAC58              --------->GLK1(2)       <--- -----HVH21   <----------DOF2--------->TOE1(2)  <----------DOF2    *TSS <---------GLK1(2)        <---   ggccaagtttgtgaggctttgctagatcagacatacgacacaagggcttacttttgcttccgtccatggctgtagaatctctcaactatgaattctcttg  18594500                                                                                    <---------At4g35610                                                                                    --------->At4g35610                                     --------->YAB1                                --------->ARR14(2)                                     -------->HAHB4                                ------->TEIL                                     --------->ATHB12                              <---------ARR14(2)                                     <---------ICU4                    <------ZmHOX2a(1)                                    <---------ATHB12                  <---------At4g35610                             <----------DOF2                   <---------ICU4      <---------ARR11(1)                           ------>MYB46(1)                     ---------->DOF2    <---------CCA1(2)                           ------>MYB83                     --------->YAB1<---------MYB59         <---------ZAT6   <---------ALFIN1<---------YAB1   <---------AHL20(2)>>>>>>>>>AtCCA1   <---------ZAT6        --------->MYB46(3)               --------->AHL20(2) >>>>>>>>>AtLHY --------DOF2        ------>ZmHOX2a(1) <---------YAB1<---------ZAT2 <-----------RAV1(2) ------ANAC58       <---------ANAC58--------->ICU4   <---------At4g35610 --------->At4g35610 ------ANAC58       <---------ANAC58<---------YAB1   --------->At4g35610 <---------At4g35610   ctttagagatagagatagacttccttacccactttgtaatgattatttttcagccagctatataataaaggcaggagctaactcgtatctgccaacttga  18594600                                                                                <-----------GT1                                                                             --------->AHL20(2)                                                                             --------->ATHB51                                  <---------AHL20(2)                         <---------AHL20(2)                             <---------MYB52(1)                              <---------ICU4                          ---------->ID1         <---------AHL20(2)         <---------AHL20(2)                      <---------DAG2         --------->ATHB12               --------->ICU4 <---------YAB1       <----------DOF2   <---------YAB1              <----------DOF2                 <   gttactattgctgtcccaattacactttttcgttattttcttatgagttattgaattgaaacgtttttgtcttttgaaattatttctctatattttagtc  18594700                                                                                             --------        <------ZmHOX2a(1)                                                                   <--------      <---------TOE2(3)                   <-----------GT1                    --------->WOX13(1) ------ZmHOX2a(1)               >>>>>>>>>MYB98                             --------->WRKY18(1)   taggattttaggatttagttttttatctactagtaacatatatatcactgttttcagaaatgtgcaattcattttcagtcaatccaaaacaaatttaaag  18594800                                                            --------->ARR14(2)                                            --------->ORA47(1)       >>>>>>>>>GT-1                        ------>NtERF2  ------>MYB46(1)                    -------    ----------->GT1                         <---------RAP2.6(3)                              --------   <---------TOE2(2)                       --------->RAP2.6(2)      <---------AHL20(2)       --------   --------->MYB59                         --------->DEAR3(1)   ------>ZmHOX2a(1)            --------   <---------TOE2(3)    <---------YAB1---------->DOF2      ------>MYB83      --------->AHL20(2) -->DOF2--------->WOX13(1)          <---------MYB52(2)   <---------MYB59     <---------AHL20(2) -AHL20(2)<---------ATHB12 <----------DOF2--------->DEAR3(2)<---------ARR14(2)    <-----------GT1----   gaacttaggtaaatcaattcagttttatgcttttggtaactaaagccgaccagtccataccaaatcctattttttttttttaaataaccatttcaacgca  18594900        <---------ARR11(3)            ----------->GT1        --------->ARR11(3)            --------->YAB1   ---------->DOF2              >>>>>>>>>>>>>>>>>LFY >GAMYB<------ZmHOX2a(1)        <<<<<<<<<<<<<<<<<LFY ->ANAC46                      ------->GAMYB              ----------->GT1 ->ANAC58                     --------->MYB46(3)    ---------->DOF2           --------->YAB1     <--- ->ANAC58<------ZmHOX2a(2) <---------YAB1     --------->WRKY45 <---------bZIP60(1)             ------ ----->MYB52(1)          --------->YAB1     <----------DOF2    --------->bZIP60(1)     ----------->GT1   aacgggaaaggatcatttcacaagggattataacagccattggtaactttgactaaaagagtgtgataccacaaattccatcacaagaacagagaaattt  18595000  Previous    Next  AGI:  At1g50190.1    Description:  pseudogene, CHP-rich zinc finger protein, putative, identical to hypothetical protein GB:AAD50045 GI:5734780 from (Arabidopsis thaliana) Range:  from: 18591903    to: 18594467    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g50200.1    Description:  ALATS (ALANYL-TRNA SYNTHETASE); ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding. Identical to Alanyl-tRNA synthetase, mitochondrial precursor (ALATS) [Arabidopsis Thaliana] (GB:P36428;GB:O04159;GB:Q8GUG2;GB:Q9SX40); similar to EMB1030 (EMBRYO DEFECTIVE 1030), ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G22800.1); similar to predicted protein [Ostreococcus lucimarinus CCE9901] (GB:XP_001417607.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ61577.1); sim Range:  from: 18594872    to: 18602149    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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