Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               <-------                                                                                           --------->RAP2.3(2)                                                                                           --------->DEAR3(1)                                                                                          <------NtERF2                                                                                          --------->RRTF1(1)                                                                                          --------->ATERF1(1)                                                                                          --------->RAP2.3(1)                                                                                         <---------ATERF1(1)                                                                                         <---------DEAR4(2)                                                                                         ------>NtERF2                                                                                         <---------RAP2.3(1)                                                                                        --------->RAP2.6(2)                                                                                        --------->RAP2.3(2)                                                                                        --------->DEAR3(1)                                                                                        <---------DEAR3(1)                                                                                        --------->ANAC46                                                                                       --------->ATERF1(1)                                                                                       --------->ERF1                                                                                       --------->RAP2.3(1)                                                                                       --------->DEAR3(2)              --------->MYB52(1)                                <---------ARR14(2)    <---------ATERF1(1)            <---------MYB52(2)                   --------->MYB52(1)                   <---------At4g35610     <-------TEIL                               --------->TOE1(2)                  --------->REM1(2)    --------->CCA1(2)                          --------->MYB46(3)                  ---------->DOF2<--   --------->ARR11(3)                          <---------MYB52(2)               <---------ANAC46  ---   --------->ARR14(2)                 --------->ANAC58          --------->ARR14(2)----------->HVH21   <---------ARR14(2)                 --------->ANAC58      <------NtERF2   --------->ALFIN1------>NtERF2   acgaagatacagtagcaaacgatttgaagctagaagtcggaagccatgaacgaacgagactcggcaaatcggaaaacagtggccgtgaagccgccgctag  18520900                                                          --------->ZAT6                                               <---------ARR14(3)                                               <---------GLK1(2)                                               --------->ARR11(3)      <---------ICU4                           <---------ARR14(2)                                  --     <---------YAB1                            <---------ARR11(3)                                  --   --------->YAB1                              --------->ARR14(3)  <---------ANAC58         <-------- --MYB52(1)         <----------DOF2 <---------YAB1     >>>>>>>>>GT-1                   --------->AHL20(2) -------ZAT18    *TSS             <-----------GT1   ----------->GT1<---------ANAC58  <----------DOF2 ------>ZAT18  ---------->DOF2 <---------MYB46(3)  <---------TOE2(3)                 --------->TOE2(3)   cgctctcatcatttactcaaagctttgaatttttggttaccatttcgaagattttggttaatactagtttcttatcgtttcggtttactttaaatattgg  18521000               <---------YAB1             --------->YAB1            --------->ANAC58     --------->LBD16                   --------->ANAC46   ------>ZmHOX2a(2)          <-------TEIL      --------->ANAC58   <---------LBD16         --------->LBD16      --------->ANAC46 <---------ARR14(2) --------->AHL20(2) --------->ANAC55(1) --------->ARR14(2) <---------AHL20(2) --------->AtLEC2                                 --------->DAG2 --------->HVH21   <---------AHL20(2)  --------->ANAC58                       --------->MYB52(1) --------->ARR10   --------->AHL20(2) <---------LBD16   <-----------GT1---------->DOF2 ---------->DOF2 ----CBF------------>CBF <---------LBD16        --------->ANAC58    --------->YAB1<-----------HVH21 -   tctgatccggttcaattctaattaaattccggttcatttccacgcaattcaaggaattttgctatttcaaaaataaagagaaacggtcagaaagcgattg  18521100                                                     --------->ARR11(3)                                                     <---------ARR14(2)                                                     <---------ARR11(3)                                                     --------->ARR14(2)                                                    <------ZmHOX2a(1)                                             ------->GAMYB                                          =                                            <---------MYB52(2)                                      <                                           --------->At4g35610                                      -                                           <---------At4g35610                                      -                                       <---------ANAC55(2)                                <---------bZIP60(1)                                       --------->ANAC58                                   --------->bZIP60(1)             <------ZmHOX2a(1)         --------->ANAC55(2)                         ==================           <---------TOE2(3)           --------->ANAC46                            ------------>CBF <      --------->GLK1(2)                --------->ANAC55(1)                         ------->GAMYB    =      <-----------ARR10                --------->ANAC58                          --------->ANAC58<---     <---------GLK1(2)              --------->ARR14(2)--------->GLK1(1)          --------->ANAC58----  --------->YAB1 --------->YAB1     <---------ARR14(2)<---------GLK1(1)   <-----------GT1 --------->TGA2(1) -------->MYB52(1)             ----------->GT1  <---------O2--------->MYB46(3) --------->MYB46(3)<---   ccaaacagaatctaaggaatcaaaattcaaaattagaaaatacgcaactcacgaggatatcaacaaatcgtggttttaacgacaacccaattacatcact  18521200           <---------ANAC58           <---------ANAC58           --------->ANAC55(2)           <---------ANAC55(2)        --------->TOE2(2)       --------->YAB1    <---------CCA1(2) <-------MYC4 <-------MYC2 ------->MYC3 ------->MYC4 <-------MYC3 ------->MYC2 ========================MYC_MYB                                                                  --- ---------TGA1a                                                                                  <--- -------->TGA1a         <-------TEIL                                                            <---- -------->O2      <---------MYB52(1)                                                            <---- =========MYC_MYB<-------GAMYB----------->GT1                                                   ----- ---------O2     <---------RAP2.6(3)         ----------->TBP                                    ----- ==============================================bZIP_DOF                                         <---- ------ZAT14    <---------ANAC58             --------->AHL20(2)             --------->TOE1(2)   ----- ----->ZAT14    <---------ANAC58             <---------YAB1        ----------->GT1             <----- ------REM1(2)  ----------->GT1     <----------DOF2   *TSS     --------->At4g35610  ----------->GT1   acacgtgtatcatacgtgccgttacatacagatggatactttcgcttataaatatagcatcaaacagctctgtaaaaacctagaaatcgaaaaaatcaga  18521300                                                                            ------>ZmHOX2a(2)                                                                           <------ZmHOX2a(2)       ---------->DOF2                                                     <---------RVE1(1)    ------>ZmHOX2a(2)                                                     --------->ARR11(3)   <------ZmHOX2a(2)                                                      <---------ARR14(2)  <---------ARR11(3)                                                      <---------ARR11(3)  <---------AGP1                                                          --------->AGP1  --------->AGP1                                                          <---------AGP1  --------->ARR11(3)                                                      --------->ARR14(2) --->ZmHOX2a(2)                                                        --------->HSFB2a(2)      ----- ---ZmHOX2a(2)                                                         <---------HSFC1(1)  --------->ANAC46 -----ARR14(2)                                                         <---------HSFB2a(2)<---------HSFB2a(2) -----ARR11(3)                          <<<<<<<<<TBF1        --------->ARR14(2)           --------->HSFB2a(2) ---->AGP1                           <<<<<<<<<TBF1           <---------ARR14(2)          <---------ANAC46 ---->ARR14(2)              --------->ANAC46                 --------->GLK1(2)          <---------LBD16 -----AGP1                  --------->ANAC58                 <-----------ARR10    <----------DOF2 ---->ARR11(3)              --------->ANAC58            --------->AtLEC2 <---------CCA1(2)--------->LBD16 ----CCA1(2)              ---------->DOF2     ---------->ID1<---------CCA1(2)<----------DOF2    -----   tctagatctaaaagaagagcgtcttcataaacgcccttcttcttcttcgtcttcttccctgcaaatctagtttctagatcttttctttcttccgcgaaac  18521400                                                    --------->GLK1(1)                                                    <---------GLK1(1)                                                   --------->ARR14(2)                                                --------->ETT(1)    <----------DOF2                                             --------->ZAT2 <---------ANAC46                                             <---------ZAT2 <---------ANAC58                                        --------->ARR14(2)  <---------ANAC58                      <---------ALFIN1  <---------ARR14(2) <---------ZAT2           <---------ZAT18             --------->GLK1(1)   --------->ZAT2           <---------ZAT14    --------->WRKY18(1)  <---------ARR14(2)           --------->ZAT18   <-----------HVH21<-----------HVH21   --------->At4g35610              <- ---->ANAC58        <------ZmHOX2a(2) <---------MYB52(1)<---------ANAC58                        <---- ---->ANAC58       --------->ARR14(2)<---------DEAR3(2) <---------ANAC58    <---------ANAC46<--------   gaaaatgagagagtgcatttcgatccacattggtcaggccggtatccaggtcggaaatgcttgctgggagctttactgtcttgaacatggcattcaggtt  18521500                                                                                                  ---                                                                                                 <---                                                                                                <----                                                                                     --------->WRKY12                                                                                     --------->WRKY38(1)                                                                     <---------CCA1(1)          <----                                                         <------ZmHOX2a(2)    --------->LBD16   -----                     ------>ZmHOX2a(2)                  --------->ARR11(3)   --------->ANAC46   <----                   <---------AGP1                   ---------->DOF2  <---------RVE1(1)          -----       ------>ZmHOX2a(1)                   <---------ANAC46         <---------ARR11(3)         <-----       =====================HOX2a_HOX2a    <---------ANAC58  <---------ARR14(2)      ----------->HVH21 --------CCA1(2)   <---------ARR11(3)      <---------ANAC58  --------->ARR14(2) ----------->RAV1(1) ---TEIL       --------->YAB1             ---------->ID1<---------ARR11(3)  <---------LBD16--------->TOE1(1) -TOE2(3)   <---------CCA1(2)<-----------GT1     <---------AHL20(2) --------->ARR11(3)<---------WRKY18(1)   cgtctcttcctcttctatcttgatctgtgtttttcttcatatttttcgtattttaaaagatcaaatctgagatatttttgcgcagcattgacctcgtaga  18521600                     ------>ZmHOX2a(2)      <---------ANAC55(2)      --------->ANAC58      --------->ANAC58      --------->ANAC55(1)      --------->ANAC55(2)      --------->ANAC46     <---------TOE2(3)                                              <---------ARR14(2)    <-----------GT1 --------->CCA1(2)                              <---------GLK1(1) --->ZmHOX2a(2)     <------ZmHOX2a(2)                              --------->GLK1(1) ---ZmHOX2a(2)     --------->AGP1                          <---------MYB46(3) -----ARR11(3)     --------->ARR14(2)                     <--------P--------->ARR14(2) -----ARR14(2)     <---------ARR14(2)                     <---------WOX13(1) ---->ARR11(3)     <---------AGP1                        <-------GAMYB -----AGP1         --------->ARR11(3)                   <---------MYB46(3)              <---------AHL20(2) ---->AGP1         <---------ARR11(3)--------->O2      <---------AtMYB61                <---------ATHB51 ----CCA1(2)     ----------->ARR10   <---------O2    <-----------RAV1(1) <---------MYB52(1)        --   tctattttacgtaatcgtttagatctgtgtttgatttcgacgtcttatgaaatttctgtggttgatgcgaaatccgtttctcatttctaaattattcgat  18521700                                                                --------->ARR14(2)          <------ZmHOX2a(2)                                     <---------ARR14(2)          --------->CCA1(2)                                   --------->LBD16         <---------AGP1                             --------->bZIP60(1)           <---------ANAC58         --------->ARR14(2)                <----------DOF2   --------->ANAC55(2)  <---------ANAC46         --------->AGP1                   <---------ANAC58<---------ARR14(2)      <---------ANAC58         --------->ARR11(3)               <---------ANAC58--------->ARR14(2)     <---------MYB46(3)         <---------ARR14(2)            <---------WOX13(1)<---------CCA1(2)  <---------AHL20(2)         <---------ARR11(3)<---------GLK1(1)      --------->At4g35610      --------->YAB1           <       ----------->ARR10   --------->GLK1(1)   <---------At4g35610        <---------YAB1            < ----->TEIL------>ZmHOX2a(2)     <-----------HVH21<---------At4g35610   --------->YAB1         <-----   gaacctggatagatctgtgtttgaattggatttcatgtcagattgcttttgctgatgccatatccgtatttgttttataatattgggtgaaggaaaactt  18521800  Previous    Next  AGI:  At1g50000.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO49872.1); contains InterPro domain Protein of unknown function DUF558, methyltransferase predicted (InterPro:IPR006700); contains InterPro domain PUA-like (InterPro:IPR015947) Range:  from: 18518727    to: 18520917    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g50010.1    Description:  TUA2 (tubulin alpha-2 chain). Identical to Tubulin alpha-2/alpha-4 chain (TUBA4) [Arabidopsis Thaliana] (GB:P29510); similar to TUA6 (tubulin alpha-6 chiain) [Arabidopsis thaliana] (TAIR:AT4G14960.2); similar to TUA5 (tubulin alpha-5) [Arabidopsis thaliana] (TAIR:AT5G19780.1); similar to TUA4 (tubulin alpha-4 chain) [Arabidopsis thaliana] (TAIR:AT1G04820.1); similar to alpha tubulin [Picea wilsonii] (GB:ABX57816.1); similar to alpha tubulin 1 [Pseudotsuga menziesii var. menziesii] (GB:AAV92352.1); similar to alpha-tubulin [Gossypium hirsutum] (GB:ABO47736.1); contains InterPro domain Alpha tubulin; (InterPro:IPR002452); contains InterPro doma Range:  from: 18521254    to: 18523668    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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