Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <---------AHL20(2)           --------->AHL20(2)       <---------YAB1      <---------AHL20(1)      --------->AHL20(1)      <---------AHL20(2)     --------->AHL20(2)                                                --------->ATHB12     --------->YAB1      <----------DOF2                              <---------YAB1  --------->YAB1      <---------ARR11(1)                         --------->AHL20(2) -------->ANAC58      --------->ARR11(3)                         <---------AHL20(2)                <- -------->ANAC58      <---------ARR11(3)                        --------->AHL20(2)         <---------ARR14(2) ----->HVH21         <---------CCA1(2)<-----------GT1     <----------DOF2                  --------->ARR14(2)   acaagaattatatttatatagacatatctttctgtcttaatttccatcttgaagcttgaacttttatttaatttgattagcaattctaaggggtatatgg  18516900                                                                                    <---------ANAC58                                                                               ------>MYB83----------                                                                   ------->TEIL------>MYB46(1)                                                                 <---------ZAT14    <---------ANAC58                                                                 --------->ZAT14   --------->ATHB12                               <-----------GT1                 --------------->AtSPL8<---------WOX13(1)        --------->YAB1  ------>ZmHOX2a(1)              ----------------------->TaNAC69(2)  ------>ZmHOX2a(1) --------At4g35610     --------->TOE2(3)              <---------MYB46(3)    --------->ANAC46    -----   aagatgctaatcacaataaatctatcctcatattatcccaatttgtgcttccacagtggatggactctgtacttctccaccaaattgattgtccttctta  18517000                                          <---------ZAT14                                         <---------ZAT6                                 --------->YAB1                              <----------DOF2             --------->ZAT18         --------->YAB1                           --------->ARR11(3)             <---------ZAT18         --------->ZAT6                           --------->GLK1(2)          <---------ICU4             <---------ATHB12          --------->TOE2(3)<---------ARR11(3) --------->ICU4             <---------At4g35610    ----------->GT1    <XXXXXXXXXXXXXXXXXXXXMIR866-5P --------->YAB1     <---------GLK1(1) ----->AGL15      <---------ANAC58     <---------ANAC46  <------ZmHOX2a(1) --------->ZAT18<---------CCA1(2) ----->DOF2       <---------ANAC58  <----------DOF2  --------->ICU4      --------->At4g35610       --   aagaattggtaacttcaattgcttagcaaaatctttttctttagtgtaatgactaatgaggacactattcactagagctccctatcagtatcatatcatc  18517100                                                            ----------->GT1                                                           <---------TOE2(3)                     <---------ANAC46               --------->TOE2(3)                     <---------ANAC58            --------->ARR11(3)                  <---------MYB52(1)           <----------DOF2         <----------DOF2  <----------DOF2             <---------ANAC58           <---------DAG2          <---------DAG2<---------ARR11(1)   <-----------RAV1(1)        <-----------GT1       ---------->DOF2   <---------CCA1(2)    --------->ARR11(3) --------->GT1       <---------ANAC58    <----------DOF2   <---------YAB1       <---------ANAC58-----   ttggttaaattcacttttcaattgcttattgcaaaagctttttctttatcaaatctttaatatggttagaatatgttgttttgcttcgtttgtacttctg  18517200                                     ----------->TBP --------->YAB1             ---------->DOF2                             <---------ATHB12       <-------TEIL            --------->YAB1          -                   <-----------GT1   --------->AHL20(2)                    <---------YAB1          --              <------------CBF<-----------GT1  <---------WOX13(1)        --------->YAB1         *TSS<          <---------YAB1   <-----------GT1    <------------CBF          <---------YAB1       --------      --------->TOE2(3)  --------->AHL20(2)  --------->ATHB12    --------->DAG2--------->AHL20(2)  -- ------>GT1--------->YAB1<---------AHL20(2) <---------YAB1      ---------->DOF2<---------AHL20(2)  --   gtgaaaaacattatcatattgtcacattttaatcactctataaatattgattgattcatgagtccataaagttgatgataataaaagagcgattcacgtc  18517300                                                                                                   <- ------->GAMYB                                                                                     -- --------->AtMYB61                                                                               ---- -------->MYB46(3)                                                                            ------- ---->MYB46(1)                                                                     --------->KAN4(2) ---------ATHB12                                                                  --------->KAN4(1)<- ->ANAC46                                                                         <---------KAN4(1)-- ------>P---------->DOF2                                                     >>>>>>>>>TBF1 <---------AtMYB61 ---->MYB83    ---------->DOF2                    ---------->DOF2         >>>>>>>>>TBF1  --------->LBD16   caaccatctccaaaagaaaaagaactatttaagaagaaaacagagagaccaaaaaagactctaatggagactggaagaagaagaacaatcccagaggtgg  18517400                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                   <-                                                                                                   <-                <-------GAMYB                                                            --------->TGA1a  <---------ANAC58            <---------ANAC46                                           --------->O2  <---------ANAC58            <---------ANAC58                                           ============ --------ARR11(3)             <---------ANAC58                              ----------------------->TaNAC69(2) ------->ARR14(2)      --------->ANAC58                                  --------->GLK1(2)      <---- ------->ARR10<---------TOE2(3)                             --------->GLK1(1)            <---------TGA1a -->ALFIN1   <---------At5g28300                   ---------->DOF2      <---------GLK1(2)<---------O2 --------ARR14(2)      --------->ANAC58  <---------ATHB12   <---------GLK1(1)         ----------->HVH21 ------->ARR11(3)<---------MYB52(1) <-------TEIL   ================================================bZIP_DOF   agatacttgcaagattaccgttgagaagcattgcgaggttcaaatcagtatgcaaaagatggaaatcagtaatagaatcggactacttccgacgtctctt  18517500              <---------ZAT2              --------->HSFC1(2)              <---------HSFB2a(1)              --------->HSFB2a(1)              <---------HSFC1(2)              <---------At4g35610          --------->DEAR3(1)       <-----------GT1   <----------DOF2  ------>ZmHOX2a(2)  ========================HOX2a_HOX2a <------ZmHOX2a(2) =========================HOX2a_HOX2a <---------RVE1(1) ---------ARR11(1)                                               ----------->HVH21 -----------ARR10                                    --------->GLK1(2) -------->ARR11(3)                                   --------->ARR11(3) ---------ARR11(3)                                   <-----------ARR10 -------->ARR14(2)                                   <---------ARR14(2) ---------ARR14(2)   <---------ALFIN1         <---------ZAT14  --------->At4g35610 --------CCA1(2)   ------>ZmHOX2a(1)--------->YAB1   <---------ARR11(3) --------->ANAC58 --------ARR14(1)  =======================HOX2a_HOX2a--------->ARR14(2) --------->ANAC46           -- =============bZIP_DOF --------->ANAC46       --------->ZAT14  <---------At4g35610   <---------AtLEC2 -----LBD16  ----------->ARR10     <------ZmHOX2a(2)<---------ARR14(1)  --------->ANAC58           --   cggatcttttcaccgaagctcctctacctcatggtcgatcatgttcagaacagagtatcttcgtgagatgacacaagccataggcttccatggatgcaaa  18517600                                                        <---------HSFB2a(1)                                                        --------->HSFB2a(1)                                                        --------->HSFC1(2)                                                       ------->TEIL                                                       <---------ARR14(2)                                                       --------->ARR14(2)                                                       --------->GLK1(2)                                                       <-----------ARR10                                                       <---------ARR11(1)                                                      <---------ARR14(1)             <---------CCA1(2)                   --------->ARR14(2)      ------>ZmHOX2a(2)                          <---------ARR14(2)     --------->HSFC1(2)                         <---------KAN4(1)     <---------HSFC1(2)                         --------->KAN4(1)     <------ZmHOX2a(2)                          --------->GLK1(1)     --------->HSFB2a(1)                       <---------KAN4(2)     <---------HSFB2a(1)                       ---------->TaMYB80     <----------TaMYB80                       --------->YAB1    <---------ARR11(3)                        <---------GLK1(2)------>MYB46(1)    --------->ARR11(3)               <---------------AGL15     -------->P    <---------ARR14(2)               --------------->AGL15     ------>MYB83    --------->ARR14(2)            --------->ANAC58    <---------GLK1(2)    <-----------ARR10             --------->ANAC58    <---------CCA1(2) ------->TOE2(2)              --------->ARR11(3)<---------GLK1(1)       --------->ZAT6             <- ------->TOE1(2)        <-------TEIL----------------->AGL1    <---------ALFIN1                 <-----   acatgggatcttcccaaatctctagtttcatatatcatgccatttcaagaatatccgaatctccctacctctgaatactactatatagcttcttccaatg  18517700                                                                 <------MYB46(1)                                                                 <------MYB83                                                                <---------TOE1(2)                                                                <---------TOE2(2)                                                               <---------MYB52(1)                ----                                                             <---------ANAC58                    ====                                                             <---------ANAC58                   <----          ------>ZmHOX2a(2)                            <---------ARR11(3)                       ===== --------->ATHB12                                   <---------YAB1                             ------ --------WOX13(1)<---------ANAC58              ----------->GT1<-------GAMYB                    <----- ----ATHB12      <---------ANAC58       ----------->GT1--------->ARR11(3)     <-----------GT1 <------   gattgatttggatcgatgtgcttgtttctcgcatcaagaacaaggtttatagttataaatctttcgttggtaatccagttttacaagaatgggttgagat  18517800  Previous    Next  AGI:  At1g49980.1    Description:  similar to REV1 (Reversionless 1), damaged DNA binding / magnesium ion binding / nucleotidyltransferase [Arabidopsis thaliana] (TAIR:AT5G44750.2); similar to REV1 (Reversionless 1), damaged DNA binding / magnesium ion binding / nucleotidyltransferase [Arabidopsis thaliana] (TAIR:AT5G44750.1); similar to hypothetical protein OsJ_011272 [Oryza sativa (japonica cultivar-group)] (GB:EAZ27789.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63978.1); similar to hypothetical protein OsI_012241 [Oryza sativa (indica cultivar-group)] (GB:EAY91008.1); contains InterPro domain UMUC-like DNA-repair protein; (InterPro:IPR001126) Range:  from: 18511639    to: 18516840    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g49990.1    Description:  Identical to F-box protein At1g49990 [Arabidopsis Thaliana] (GB:Q9LPM2); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G26010.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 18517296    to: 18518767    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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