Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  --------->AHL20(2)                            --------->AHL20(2)                           --------->AHL20(2)                           --------->ICU4                           <---------ATHB12                       <---------ZAT18                       --------->ZAT18                       ------------>CBF      --------->MYB59           <---------AHL20(2)  <---------AHL20(2)                                                   <           --------->AHL20(2)  --------->AHL20(2)                                            -------- ---->ZmHOX2a(1)      --------->ANAC58     <---------MYB52(1)                                <------- ------>TOE2(3)       --------->ANAC58------------>MYB.PH3(1)    <------------CBF        ---------->DOF2 ->At4g35610         <---------ZAT18--------->AHL20(2)    ---------->DOF2        --------->ANAC46  <-   cctaattttcaaaataaatacagagcgcaataaataaataaaacagttaggcccaaactataaagcccattgatatgtgttttacgaaaataaaaggtat  18488200                                      --------->ANAC58 ---------At4g35610                   --------->ANAC58                    <---------ICU4 ->ARR11(3)              --------->LBD16                           --------->MYB111(1)         <----- --ARR11(3)              ----------->GT1  -------->P        <---------TOE2(3)                  <----- --------YAB1          <---------LBD16--------->ANAC46 <----------DOF2  <---------YAB1 <-----------RAV1(1)   tctgcttatccattccatgtttgaatgcggaaaaaaaaacaagctacccatttgctgctttcaaggtagtagttactaatgacgacctattgttgtttgg  18488300                                                            <---------ANAC58                                                            <---------ANAC58                                                        <---------GLK1(1)                                                       <---------ARR14(2)                                               <----------DOF2                            <---------ANAC58                                            --------->ARR11(3)                            <---------ANAC58                                            --------->ARR14(2)                <---------HSFB2a(1)                                            --------->GLK1(2)    <---------YAB1  <---------ATERF1(1)                   --------->At4g35610      <---------ARR14(2) <---------ZAT2 --------->HSFC1(2)        --------->DAG2                      <---------ARR11(3) <---------At4g35610  ------>NtERF2    --------->TOE2(3)   ----------->GT1    <---------GLK1(2)<---------ANAC46  --------->HSFB2a(1) -MYB83---------->DOF2<------ZmHOX2a(1)----------->GT1 --------->ARR14(2)     <---------HSFC1(2)----- -MYB46(1)   ---------->DOF2          --------->ALFIN1<------ZmHOX2a(1) ---------->DOF2   <---------ANAC46   ttttaatctaaaagtgaaagcagaggaagttacaaacagagtggagaatctttagaggaactgcgtgctgatagaaaagaagcctccgacttgcgttcaa  18488400                    <-----------HVH21                                                   ------------>CBF                 --------->At4g35610                                             <---------ANAC58                 <---------At4g35610                              ----------->GT1<---------ANAC58                --------->GLK1(2)               <------ZmHOX2a(1)--------->DAG2<-----------GT1<------  <---------At4g35610                    <---------At5g28300     <---------TOE1(3)  <---------At4g35610  --------->At4g35610             --------->ANAC58               <---------TOE2(3) ------>ZmHOX2a(1) ----->DOF2---------->DOF2        --------->ANAC58     ---------->DOF2    <------------CBF    <------   aagcagcggtctataaagcatctgtcatatcgaacaacgcatttactgtaggaacttcaaagacgataaggtaatctattgtttcctgcttacaatgctt  18488500        --------->YAB1       --------->ICU4           --------->ARR11(3)     --------->YAB1             <---------ARR11(3)     <---------ICU4         --------->ANAC55(2)                                   --------->ALFIN1    --------->ICU4     ----------->HVH21         <-----------HVH21  <---------AHL20(2)  --------->YAB1     <------------CBF       --------->YAB1          --------->AHL20(2) <---------YAB1 <---------At4g35610        <---------YAB1        ----------->GT1<---------ANAC58 ---ANAC58      --------->At4g35610   --------->ZAT6      <---------ZAT6        <---------ANAC58 ---ANAC58    <-----------RAV1(2) ------>ZmHOX2a(2)   --------->MYB46(3)   <----------DOF2   gatatgataatgatgttcagatgaattgacacatgatctaacactataatatgtcaactactgtgaatgtttaattcctttggagtgctcgtcgagtcta  18488600                                <---------At4g35610                                <---------ZAT2                                --------->At4g35610                                ----------->RAV1(2)                             --------->ZAT18                                               --------->LBD16                             <---------ZAT18                                          <---------At4g35610                             <---------ZAT14                                 <---------TOE2(1)                             --------->ZAT14                  ------>ZmHOX2a(2)    <-------TEIL                            --------->ALFIN1                --------->ARR11(3) <---------TOE1(2)           <---------At4g35610  --------->ZAT2 --------->ANAC58              <---------TOE1(1)   <---           --------->At4g35610<-----------RAV1(2)<<<<<<<<<<<<<<<<<LFY   <---------------AtSPL8 ------ ----------->HVH21    ---------->DOF2          --------->ANAC58    <---------MYB46(3) --------->At4g35610   tggatgacaccgatgctgactcattaaagagtgcagctgagcatttgataagcacattggatgatccagtcgttgtggtactaggttcatctccagagaa  18488700                                                                                                  ---                                                                                                  <--                                                                 --------->ATHB12                <---                                                                 <---------ICU4                 xxxxx                                                                 -------->ATHB1                ------                                                                 --------->ATHB51             -------                                                                <---------AHL20(2)            <------NtERF2                                                                <---------YAB1               --------                                                                --------->ICU4              <--------                              ------>ZmHOX2a(1)                 --------->AHL20(1)          <--------                              --------->HSFB2a(2)          <------ZmHOX2a(1)                <--------                              --------->LBD16             ----------->GT1                   <--------       --------->MYB52(2)    <---------LBD16          --------->ANAC46    <---------ALFIN1 <---------LBD16     <--------P      <----------DOF2                ---------->DOF2      <------NtERF2   --------->ALFIN1 -------ID1     --------->At4g35610            <------ZmHOX2a(1)<---------ATHB51         ----------->HVH21 ---->DOF2  --------->MYB52(2)<---------HSFB2a(2)--------->GLK1(1)      ------>NtERF2  <-----------RAV1(1)   agacaaggttagtttagttgctgcatttagtcctggaatagtctccctaggagttcaagcaggaaaattattgcccccatagctaagctctgtggcggag  18488800                                                           <---------ANAC58                                                           --------->O2                                                           <---------O2    <---------ANAC46                                       <---------ANAC58  <---------MYB46(3)                                    <------ZmHOX2a(2) --------->ALFIN1                                      <---------ARR14(3) <---------AtMYB61                                     --------->ARR14(3) <---------DEAR3(1)                                    <---------ARR14(2) ------>ALFIN1                                         <---------AGP1 -------AtMYB61                                        --------->ARR11(3) ---ZmHOX2a(1)         --------->RVE1(1)               --------->ARR14(2) xxxxxxxxxx>smallRNA(fl3)                              <---------ARR11(3) --->ALFIN1           --------->ARR11(3)           <------ZmHOX2a(1) -->ATERF1(1)         <---------ARR11(3)        <---------LBD16 ->LBD16              --------->GLK1(2)      <---------At4g35610                       --------->ALFIN1 -ANAC58         --------->ANAC58            --------->At4g35610              --------->DAG2 -DEAR3(1)       --------->LBD16          ---------->DOF2------>ZmHOX2a(2)   ---------->DOF2 -ANAC46         --------->ANAC58  <---------ANAC46=============HOX2a_HOX2a--------->LBD16 -ANAC58   ---------->DOF2       --------->ZAT18<-----------RAV1(2)       --------->ANAC46   gaggtggtggaaagaaagcccgaaaatctctcaagtgccttagagaaagctcaggaagatctcgtggcaactctatccgaaaagctagggtgaagcacaa  18488900                                                                                                    <                                                                                           <---------RVE1(1)                                                                                           <---------CCA1(1)             <---------AtLEC2                                                             --------->ARR11(3)         <---------At4g35610                                     <---------ANAC58         <---------ARR11(3)         --------->At4g35610                                     <---------ANAC46         --------->AHL20(1)       --------->ZAT18                    <---------ANAC58       <---------AtLEC2         <---------AHL20(1)       --------->ZAT14                    <---------ANAC58       <---------ANAC58      <---------TOE2(3)       <---------ZAT14            --------->ZAT18 <---------HSFB2a(2)                 ---------->DOF2  ---------->DOF2                 <---------ZAT18 --------->HSFB2a(2)         <---------WOX13(1) <---   cttcaaaagtgaactgcatgtacagagagaaggaagagcacatagcttgattctagacaagtgtattgcatgtatagatgatggacattaaagatatttg  18489000                              --------->YAB1                                       ------->TEIL                         <---------YAB1                                <----------DOF2 ------->TEIL      <---------AHL20(2)       <---------YAB1<---------YAB1     --------->ATHB12 ---------CCA1(2) --------->AHL20(2)       <---------TOE2(3)          <---------ANAC58       -------- ------TOE2(3)  --------->TOE2(3)     <----------DOF2<------ZmHOX2a(1)<---------ANAC58  <---------SPL7   atgtatctagtttttgaacattaaatgatcaatgacatttcttttaatgaatgaaggactatgtttcgatttgctttactcattgaacgtcgtcccaacg  18489100  Previous    Next  AGI:  At1g49930.1    Description:  similar to EMB1030 (EMBRYO DEFECTIVE 1030), ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G22800.1) Range:  from: 18488600    to: 18489307    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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