Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                                -----                                                                   <----------ID1               -----  <---------ARR14(2)                                           <---------AHL20(2)               <----  --------->ARR14(2)                                        --------->YAB1        <<<<<<<ZML2   <---- <------ZmHOX2a(1)                                         <---------YAB1      --------->HSFB2a(2) ---->DOF2    <------ZmHOX2a(1)    --------------------->WRI1 <---------YAB1   <---------HSFB2a(2)--- -------------TaNAC69(2)<---------------AtSPL8           --------->YAB1 ---------->DOF2 --------->YAB1   agaggaaacgactcgaggaaactaatatggaacagaacatagaacgtatagttgttttctcataataaatggacaaaagtactagaacaatggtaatgga  18467300                          <XXXXXXXXXXXXXXXXXXXXMIR399A    --------->STY1(2)     <XXXXXXXXXXXXXXXXXXXXMIR399D    <---------STY1(2)     <XXXXXXXXXXXXXXXXXXXXMIR399E                                    <---------AHL20(2) ---->ARR11(3)           <XXXXXXXXXXXXXXXXXXXXMIR399F                                    <---------AHL20(1) -->TEIL   <-------TEIL <---------ANAC46                                     <<<<<<<<<MYB98 ---->ARR14(2)--------->ANAC58                                           <----------DOF2 --------->AHL20(2) -----ARR14(2)--------->ANAC46        <------MYB83                       ============================ -----ARR11(3)--------->ANAC58        <------MYB46(1)    ------->TEIL    --------------->AGL15 --->ZmHOX2a(2)         ----------->GT1        <---------REM1(1)---------->DOF2          <---------AHL20(2)   tcttctagctagattcaagaaatattgggtaaatttcatttggtaacagttgtagaatgtatgtaataaagttttctttgttagggaccaattttttttt  18467400                                                            --------->DOF5.7(2)                                                   --------->ARR11(3)                                                   <---------AHL20(2)                                                   <---------AHL20(1)                                                 <---------AHL20(2)                                                 <---------AHL20(1)                                                --------->YAB1                                              <---------AHL20(1)                                              --------->AHL20(2)  <---------ICU4                                              --------->AHL20(1)--------->ARR11(3)                                              <---------AHL20(2)<---------ARR11(3)                                        ----------->GT1    --------->TOE2(3)                        <              --------->ALFIN1     <----------DOF2 --------->AHL20(1)                               -              <-----------RAV1(1)--------------->AGL15   <---------TOE2(3)                      -----       --------->TOE2(3)         <---------------AGL15   <---------TOE1(3)                    ------- ================================================MADS_MADS----------->GT1    <-----------GT1 <-------   ttaaaattacatcaatgtgttgctcaattagataactctttgtagtaatataatattttgacgttaaatctttgcaaaattactaaaccagcattgcaac  18467500            --------->YAB1                                                      <---------AHL20(2)    --------->ICU4                                                              --------->AHL20(2) <---------AHL20(2)                                      --------->At4g35610 --------->AHL20(2) ----- --------->AHL20(2)                                 <---------YAB1          --------->AHL20(2)  ----- --------->AHL20(1)                     <---------AHL20(1)              --------->AHL20(2)   -------- <---------AHL20(1)                     --------->AHL20(1)           --------->YAB1         --------- ---------AHL20(2)                      <---------AHL20(2)          <---------ATHB12      <---------LBD16 -------->AHL20(2)                      --------->AHL20(2)       <---------AHL20(2)  --------->AHL20(1) ---->MYB46(3)                         --------->AHL20(2)<---------At4g35610<---------AHL20(2)  ----- ---->RAV1(1) <---------YAB1--------->ETT(2) --------->AHL20(2) --------->AHL20(2)  <---------ICU4 ---ID1<---------YAB1       <---------ETT(2) <---------AHL20(2) <---------AHL20(2) --------->ICU4   aaataaattatgaattatcagacgaattagtcgacatatgaataaatttaaatgatttttgctgaattaaatcataaaataaataaatattatgcggtaa  18467600                                    <---------AHL20(2)                                   <---------AHL20(1)                                   <---------AHL20(2)                                   --------->AHL20(1)                                <--------ATHB1                                <---------ICU4                 ---------->DOF2                                <---------AHL20(2)          --------->ANAC58                                --------->ATHB51            --------->ANAC46                                --------->AHL20(2)          --------->ANAC58                               <---------YAB1       <---------AHL20(2)                               --------->ICU4       --------->AHL20(2)                            <---------YAB1         <---------AHL20(2)                          --------->YAB1       --------->AHL20(1) ------>GT1             <-----------TBP        <---------AHL20(2)                            <------- ---->ANAC58          <---------------AGL15    <---------AHL20(1)                          --------->At4g35610 ->At5g28300          --------------->AGL15    --------->AHL20(2)                 --------->MYB52(1) -->GT1            <-----------GT1 --------->AHL20(2)       --------->AtLEC2    <---------MYB52(2) ---->ANAC58   <---------YAB1--------->YAB1   --------->AHL20(2)     ---------->DOF2 *TSS  <---------At4g35610   gaaaaatttcatgtgttatttttactatttataataatttatttcaaattttatttattttcaggcaaagcgaaaggaagaaacaaacagttgagctgtt  18467700                                                       --------->ANAC58                                                       --------->ANAC58             --------->HSFC1(1)                                                <---------ANAC58      <---------ALFIN1                                                <---------ANAC58  --------->MYB46(3)<---------HSFB2a(2)                              --------->LBD16  <---------MYB46(3)<---------At4g35610--------->HSFB2a(2)                              <---------HSFB2a(2)    <---------At4g35610            <---------HSFC1(1)                              --------->HSFB2a(2)    --------->At4g35610    --------->LBD16   ------- --MYB46(3)    --------->HSFB2a(2)       ---------->DOF2         <------NtERF2<---------ARR11(3)   gaggcattgtctaatttctcgagtgatttctccgagaaacaaaaaaagatgggtgagaagccatggcagccactactccagagcttcgagaaactatcaa  18467800                                                           <<<<<<<<<GATA-3                                                           <<<<<<<<<GATA-2           ----------------               <----------DOF2                             <<<<<<<<<GATA-1     --------->YAB1 <---------ANAC58                                ------>ZmHOX2a(1)             <---------ICU4       - <---------ANAC46                             ------>ZmHOX2a(1)               <---------ATHB12      - <---------ANAC58                      --------->ARR14(2)  <<<<<<<<<GATA-4  --------->WOX13(1)     -- -->YAB1      <---------ICU4          --------->YAB1    XXXXXXXXXXXXXXXXXXXX>MIR851-5P            <--   attgcgtccaaactcatctttccaatttcatcggcatcaagaatactcctcctagttctcaatccacaatccaaaacccaatcatctccttggactcttc  18467900            ------->GAMYB           --------->MYB46(3)         ----------->RAV1(1)      --------->ANAC58      --------->ANAC58      --------->YAB1                   ------>ZmHOX2a(1) ----->WRI1<---------MYB52(2)    --------->HSFC1(2) -------->LBD16                  <---------HSFC1(2)                            <---------ANAC46 ----->NtERF2                    <---------HSFB2a(1)                --------->WOX13(1) ------->ANAC46                  --------->HSFB2a(1)          --------->LBD16  <---------ANAC58 -------LBD16--------->MYB52(1)<---------GLK1(2)<-------TEIL<---------LBD16    <---------ANAC58   tccgccaatcgcaacaaacagttccagtcttcagaaacttcctctcaaggttcaaatctaattccggtttcaattagtttttcgtgtttgttttgacact  18468000                    --------->YAB1                   <---------YAB1               <---------ANAC58  ------->MYC3               <---------ANAC58  <-------MYC3                                <-----------HVH21    --------->GLK1(2)          ------>MYB46(1)                            ------>ZmHOX2a(1)    <---------ARR14(3)         ------>MYB83                               --------->LBD16    --------->ARR14(2)       --------->DEAR3(1)                          <---------LBD16    --------->ARR14(3)      --------->MYB46(3)                      <---------DAG2    <---------ARR11(3) <---------ICU4                            <-----------GT1   --------->GLK1(1)    <-----------ARR10  --------->YAB1                    ------->TEIL<----------DOF2      <----------DOF2    --------->ARR11(3)<---------YAB1                  <---------ATHB12  ----------->RAV1(2)   <------   tagcaaaatcttcccttgcttatcatcatcaccaacgtgttcgatgaaattccccaatgaactctttctacctttcctgggtcagaaatcgtctttcttt  18468100                 <-------GAMYB                <---------MYB46(3)               <---------AtMYB61                                <---------HSFC1(2)           ----------->RAV1(2)                                  --------->HSFC1(2)         ------>MYB46(1)                                        <---------HSFB2a(1)       <---------MYB59                                          --------->HSFB2a(1)          --------       <---------MYB46(2)                   --------->MYB59  <------ZmHOX2a(1) <-----------GT1  -----    <-----------GT1              <----------DOF2            ----------->GT1  <----------TaMYB80<----- ----DOF2------>MYB83       <---------At4g35610            >>>>>>>GRF7      ---------->TaMYB80 ------   cttattttaccaaacctgtggttgaaagttagatgctttattcaattcggttctctattgtcaggaaatttctactggtatatactgtttttatatgatg  18468200  Previous    Next  AGI:  At1g49870.1    Description:  similar to MBD10 (methyl-CpG-binding domain 10), DNA binding [Arabidopsis thaliana] (TAIR:AT1G15340.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63952.1) Range:  from: 18463880    to: 18467453    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g49880.1    Description:  Erv1/Alr family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO63957.1); contains InterPro domain Erv1/Alr (InterPro:IPR006863) Range:  from: 18467685    to: 18469745    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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