Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100     <---------TOE1(3)   <---------TOE2(3)   --------->MYB59                                                    <---------ANAC46 ----TEIL  ---------->DOF2                           <---------AHL20(2) -->ZmHOX2a(2)                                  --------->LBD16       <---------ANAC58 --ZmHOX2a(2)                                  --------->ANAC55(2)    <---------ANAC58 ----ARR14(2) <---------At4g35610    --------------->AtSPL3         --------->ZAT18 --->ARR14(2) <---------ZAT2         --------->ZAT6  --------->AHL20(2)                        <-----   ccatttaggttaacaaagctgctactctgagtttcagtatcagtactatccgtatttaaatactgactagtgccttgaacatcacgaataggtctactac  18459800                                                                                              -------                                                                                             --------                                                                                           <---------MYB111(1)                                                                                           <---------MYB52(2)        ----------->GT1                                                                    <---------MYB59     --------->GLK1(2)                  <---------MYB59               <-----------GT1    <-----------GT1     --------->ARR14(2)              <------ZmHOX2a(1)               --------->ICU4   --------->ANAC58     ------->TEIL                   <----------ID1                 <---------ICU4     --------->ANAC58     <---------ARR14(2)          ---------->DOF2                ----------->GT1       ----------->GT1    <---------GLK1(2)       ----------->GT1          --------->MYB46(3)             ---------->DOF2 <  --------->LBD16      --------->ARR11(3) ------>MYB46(1)--------------->AGL15 <---------ANAC46<-----  ------>ZmHOX2a(1)    <---------ARR11(3) ------>MYB83   <---------------AGL15 <------MYB46(1)------- ----TOE1(2)         ----------->ARR10 ----------------->AGL1 --------->ICU4   <------MYB83<---------MYB46(2)   gttcctgaatctgtaaattaggggagattttagtaaaaaggaccaaattcagacaactactgaaattagtaattactaatttggtggaaagtaactaacc  18459900                                                                                                <----                                                                                               <-----                                                                                              ------>NtERF2                                                                                              <------                                      <------NtERF2                                          --------                                    --------->DEAR3(1)                                       <-------                                   --------->ATERF1(1)                                       <-------                                   <------NtERF2                                             <-------                                  <---------ATERF1(1)                                --------->ANAC58                                 <---------DEAR3(1)                                  <---------DEAR3(1)                            --------->ALFIN1                                         --------->ANAC46                          <---------ANAC46                                           --------->ANAC58               <---------DEAR3(1)--------->ETT(2)            --------->YAB1   <---------YAB1 <-------           <---------HSFC1(2)   --------->ATERF1(1)         <---------ATHB12  --------->ICU4--------- <------MYB83  <---------ANAC46<-----------HVH21      <------NtERF2         --------->YAB1 --------->MYB52(1) ----------->GT1          --------->ALFIN1  <-----------ARR10<---------ICU4<---------YAB1  --------->REM1(2) <------MYB46(1)  ----------->HVH21<---------LBD16--------->At4g35610    --------->YAB1   ----------- -->MYB52(1) <-----------HVH21 <---------PCF2     <---------At4g35610    <---------ICU4   ----------- ->MYB52(1)--------->HSFC1(2)<---------MYB46(3)  --------->DEAR3(1)<---------At4g35610 <------NtERF2 ---------AtMYB61<------NtERF2<------MYB46(1)<------ZmHOX2a(2) ----------->TGA1  <---------WOX13(1) - ----LBD16 <---------HSFB2a(1)<------MYB83 <------ZmHOX2a(1)--------->ICU4 --------->ICU4<-----------HVH21 ->P ---------->DOF2 <---------ANAC46--------->LBD16--------->DEAR3(1)  --------->ICU4------>NtERF2--   ggatggtgaaagaagcgtcggagacggggagtgggtcgccggagaggatcacagccgtcggaatcatgacgctgattatgatgatggacgccgtgacggc  18460000                                                                    <---------TGA1a                                                                    --------->TGA1a  <---------YAB1                                                    <---------O2  --------->ICU4                                                    <---------ANAC58 -----DEAR3(1)                                                      <---------ANAC58 -NtERF2<---------ANAC58                                           --------->SPL7 ---RAP2.3(1)                                             <------ZmHOX2a(2) ->ATERF1(2)                                    <---------LBD16<---------LBD16 --DEAR3(1)                                 ---------->DOF2------>ZmHOX2a(2) --ANAC46           --------->ETT(2)   <---------GLK1(2) <-----------ARR10 --RAP2.3(3)        <---------ETT(2)   --------->ARR14(2)<---------ARR14(2) --RAP2.6(2)       <------NtERF2       <---------ARR14(2)--------->ARR14(2)  <---------ANAC46 >RAP2.6(3)      <---------ANAC46   --------->ETT(1)   <---------DEAR3(2) ------>ZmHOX2a(2) >TGA1  <---------ANAC46            <---------ANAC46  --------->ETT(1)  <---------ARR11(3)     <----- >HVH21 <---------ANAC58  <------ZmHOX2a(1) ==================================bZIP_DOF    --------->GLK1(1) -------->YAB1<---------AtMYB61  --------->ALFIN1   <-----------HVH21   --------->ARR11(3)<---------GLK1(1) ------->ICU4 --------->ALFIN1  <---------HSFC1(2)--------->LBD16--------->LBD16--------->REM1(2) <--   gatgatgatggtgtgagtggtgtcgataggaagaagtgtcggattctaaagccgggtcggatcgacccggacgtgatcttcgtgtagagaagagttccga  18460100                             <-------TEIL                           --------->ARR14(2)                           <---------ARR14(2)                  --------->WOX13(1)                <---------ATHB12           ------->TEIL   ------>MYB83                <---------ZAT14        --------->AtLEC2  ------>MYB46(1)             --------->ZAT14    <-----------HVH21--------->YAB1                   --------->ZAT18   --------->ANAC58 <---------ATHB12      ------>ZmHOX2a(2)   --------->ANAC58 --------->MYB46(3)   --------->At4g35610                        <------ZmHOX2a(1) ----At4g35610  <------ZmHOX2a(2)       <---------ARR11(3)                   --------->CCA1(2) -------ZAT18--------->DEAR3(1)         --------->ARR11(3)   <-----------HVH21   <------ZmHOX2a(1)  -   tgcgctcgtcatgcaccgatcaatcaccaaattcgtttatatgatctgaaactaagtgcagcgagtcagagacgatgagataaggaggacagagagagag  18460200                                                      <---------At4g35610                                                      --------->At4g35610                                                    <-----------bZIP910(2)                                                  <-----------HVH21                                                  <-----------TGA1                                                 <---------ANAC46                                                 --------->ANAC55(2)                                                 --------->ANAC58                                                 >>>>>>>>>>HY5                                                 --------->ANAC58                                                 <---------ANAC55(2)                                                 ===================================================bZIP_DOF                                                 <---------O2                                                 <---------TGA2(1)                                                 --------->TGA1a                                                 <---------bZIP60(2)                                                 --------->bZIP60(2)                                                 --------->TGA2(1)                                                 <---------bZIP60(1)                                                <-----------STF1                                                ----------->STF1                                               <---------TGA2(2)                                              ----------->HVH21                                              ----------->TGA1                       ====================================bZIP_DOF      <---------At4g35610                       ---------->DOF2     --------->DAG2                --------->ZAT2                   --------->DAG2        ---------->DOF2   <---------ALFIN1                         -            *TSS  ---------->DOF2        ==================bZIP_DOF      <---------ZAT2    ----------           <---------ANAC58         ----------->GT1--------->TGA2(2)     --------->At4g35610   ------           <---------ANAC46       <---------ZAT14<---------TGA1a       <------NtERF2     <----------DOF2           <---------ANAC58       --------->ZAT14--------->bZIP60(1) --------->ETT(1)    --------->TOE2(3)  ----------->GT1 =========================================bZIP_DOF<-----------HVH21  --------->ARR11(3) ---------->GT1<------ZmHOX2a(1)  --------->ZAT18--------->O2     <-----------RAV1(1) <---------ARR11(3)   aagagagaaaattgcgaggaaaaagtaaagggaaactgcagtgaaaaggtgacgtcatctcccacttgctgtcggagctaagacaaaacatctttaaaaa  18460300                                     --------->ATHB51                                     <---------ICU4                                     -------->ATHB1                                     --------->ATHB12                                     <------------ATHB5                                     <--------ATHB1                                    <---------ATHB51                                    <<<<<<<<<<AGL20                                    <---------ATHB12        --------->ZAT14                                    <<<<<<<<<<AGL24         <---------ZAT14                                    <<<<<<<<<<AGL22         --------->ZAT18            --------->AHL20(2)      --------->ICU4          <---------ZAT18            --------->YAB1          <---------YAB1     ---------->DOF2         --------->YAB1          ------------>ATHB5 --------->ANAC58  <------NtERF2             --------->DAG2          --------->ANAC46                   <---------LBD16 -------->ALFIN1        <----------ID1              --------->ANAC58                --------->MYB52(1) ->TBP --------->At5g28300 ---------->DOF2     --------->ARR14(2)               --------->ANAC58    < --->MYB52(1)       --------->MYB52(1)         <---------ARR14(2)               --------->ANAC58 ----   cggtgtcgctgtaataaaaaactaaggggaaaagcccaattattgggcctatccaagtaaagtccactaatacataggtcccaagaaaacggggagagca  18460400                                                                              --------->DAG2                                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                             ---------->DOF2                                                                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                          <-----------------AGL1                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                            <----------ID1               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                            ----------->GT1             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         --------->ZAT14          ----------->GT1                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------ZAT14        <---------LBD16                        <----------DOF2             --       --------->ANAC46        --------->MYB52(1)                    ------>MYB83                  --     --------->ZAT6   ----------->GT1      ----------->GT1           ------>MYB46(1)     <---------AHL20(2) ---------YAB1    <---------AHL20(2)     --------->DAG2         <-----------GT1          --------->AHL20(2) ----->ICU4      --------->AHL20(2)     ---------->DOF2----------->GT1xxxxxxxxxxxxxxxx>smallRNA(i)<xx   ttatgaaacactaaactgaataaatggagaaattgacggaaaaaaagggaaaaaatgttgtttaatataccaactttcaaaaagtggccatttaaactat  18460500                                                                                                   <-                                                                                                   --                                                                                              <------                                                                                            xxxxxxxxx                                                                                           <---------MYB52(1)                                                                                         <xxxxxxxxxxx                                                                                         --------->O2                                                                                         --------->TGA1a                                                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                   --------->TOE1(2)                                                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                         ------>NtERF2   <---------TGA1a               <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                         --------->LBD16  <---------O2              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                     ------>ZmHOX2a(2) <xxxxxxxxxxxx          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                        <---------LBD16 xxxxxxxxxxxxxxx      --------->ARR14(2)                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)      <---------ARR14(2)                            <---------AHL20(1)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------------->AGL15                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------------AGL15                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxsmallRNA(i)  <-----------------AGL1                ------>ZmHOX2a(2) xxxxxxxxxxxxxxxx>smallRNA(i)----------->HVH21  ----------------->AGL2            --------->WRKY38(1)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -------  ----------------->AGL3        xxxxxxxxxxxxxxxx>smallRNA(i)   <xxxxxxxxxxxxxxxxsmallRNA(i)--------->DOF5.7(2) ----->TEIL xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------->GLK1(1)             ---------->DOF2   --------->AHL20(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->WRKY12--------->ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   gaactccatatatggccaaataaaacttagtaaaagcgttgatcggccattttatatattccaaaacattgatccggccaaaaaccctgcgacgttagca  18460600                                      <---------AHL20(2)                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           ----------->GT1       --------->DOF5.7(2)                                              xxx  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->AHL20(2)                                         <xxx <---------MYB52(1)              <---------MYB52(1)                                             <xxxx --------MYB46(3)         <---------At4g35610                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->GT1            --------->At4g35610                       <---------ANAC46      xxxxxxxxxxx ---At4g35610  --------->YAB1   --------->TOE2(3)                <---------MYB52(1)   ------>MYB83<xx xxxxxxxxxxxxxx>smallRNA(s2)   ----------->GT1              <---------O2              ------>MYB46(1) xxxxxsmallRNA(i)        <xxxxxxxxxxxxxxxxsmallRNA(i)       --------->bZIP60(1)      ----------->RAV1(1) xxxxsmallRNA(s)       <---------MYB52(1)                   --------->O2           --------->MYB46(3) xxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(i)          <---------bZIP60(1) xxxxxxxxxxxxxxxxxxxxx -->At4g35610xxxxxxxxxxxxxxxx>smallRNA(i)              --------->MYB52(1) <---------AHL20(2)    <xxxx   gtcgttaatagagtcgataataggcgttagcagacgttaattaatccgtttaaacacaaacgacgtcgttttgtgtttaatcgaaaccaacaaaattccc  18460700  Previous    Next  AGI:  At1g49850.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to SDIR1 (SALT- AND DROUGHT-INDUCED RING FINGER1), protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G55530.1); similar to RING-H2 finger protein [Glycine max] (GB:AAN03470.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 18458732    to: 18460212    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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