Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         --------->GLK1(2)                                                       --------->ARR14(2)            <------ZmHOX2a(2)                                                       <---------ARR14(2)<---------HSFC1(1)                                                   <---------HSFB2a(2)   <---------HSFB2a(2)                                                   --------->HSFB2a(2)   --------->HSFC1(1)                                          --------->YAB1              --------->ARR14(2)           <------ZmHOX2a(1)<-----------GT1     --------->ARR11(3)    <---------ARR14(2)   ---------->DOF2          --------->ANAC46 <-----------GT1        <---------MYB46(3) ----CCA1(2)        <----------DOF2  --------->LBD16  <---------GLK1(2)  --------->HSFB2a(2)   tcccacaaagtaaggaggctgtctttgttttcgccattccccaatattaacatctagaatctggcaatagcggttctcgaaatgacgatcaaacaacatt  18440300                                     --------->ARR14(2)                                     <---------ARR14(2)                                    <---------ARR14(1)                                  <---------MYB59                                -------->P                                ------>MYB83                     <---------TOE2(3)                     <---------TOE1(3)                    <---------DOF5.7(2)                          --------->TOE2(3)            -------           --------->At4g35610  --------->MYB52(1)       --------->LBD16     --------->ARR14(2)    <-           <---------At4g35610  ------>MYB46(1)         <---------LBD16      --------->GLK1(2)<------      <---------AHL20(2) --------->WRKY12               --------->LBD16      <---------ARR14(2)<-----     --------->AHL20(2)  --------->WRKY38(1)           <---------LBD16      <---------GLK1(2) <------   ctcactattttatagctcccattaacgttgtccctaccgaatcccatcgtccaaaatccagggaaaacatcaaacttagaatctgcaaaatttcaatttt  18440400                                                                                            ------>ZmHOX2a(2)                                                                                          <---------ARR14(2)                                                                                          --------->ARR11(3)                                                                                          <---------AGP1                                                                                          --------->ARR14(2)                                                                                          <---------ARR11(3)                                                                                         <---------CCA1(2)        <-----------HVH21                                     --------->ANAC58         --------->ALFIN1      --------->MYB46(3)                                      --------->ANAC58        --------->LBD16 --------->HSFB2a(2)                                       --------->DEAR3(1)        ------->GAMYB <---------HSFB2a(2)                                      --------->DEAR3(2)       <---------At5g28300 -->AHL20(2)--------->ANAC58                             <---------At5g28300      --------->MYB52(1) ----------GT1           --------->ANAC58                --------->MYB52(1)       <-----------GT1 ---AHL20(1)--------->ANAC46                            <-----------GT1         <---------WOX13(1) ----AHL20(2)            --------->ANAC58          <---------AHL20(2)       <---------MYB52(1) ---AHL20(2)--------->ANAC58  --------->AHL20(2)   --------->AHL20(2)     <---------MYB46(3)=========   ttttcagaaccatcacacaattttcacaagaattaaaaaaaaacaatagagatttaaattaccgacgcattcgaagtcgttgattaaccgtggatctcga  18440500                --------->GLK1(1)                <---------GLK1(1)                                                               <----              <------ZmHOX2a(1)                                                                 <----            <---------TOE2(3)                                                          ---------->DOF2       <-----------ARR10                                --------->ALFIN1           <---------YAB1       --------->GLK1(2)                 --------->TOE2(3)                       <---------ANAC55(2)      <---------GLK1(2)        ----------->GT1      <-----------RAV1(2)          --------->ANAC55(2) ====================HOX2a_HOX2a----------->GT1------>ZmHOX2a(2)             <-----------HVH21  <----   ccagaagagaatctaaggaattctccagtggaagggtttaaaacgttgatccagccaggtatggggatgcaaaccagaccgtcacatgataaagacggtc  18440600                                                                                   <------NtERF2                                                                                   ------>NtERF2                                                                                  --------->RAP2.6(2)                                                                                  ------>NtERF2 <----                                                                                 <---------ANAC46                                                                         <---------MYB52(1)     -----                                                                      <---------LBD16       <--------          <---------ZAT14                                           <---------ARR14(2)  --------->ATHB51          --------->ZAT14                                     <---------ARR14(2) --------->ATERF1(2)     <------NtERF2                                            --------->ARR14(2) <---------RAP2.6(2)    ------>NtERF2                                           <---------DEAR3(2)   <---------ATERF1(2)    ----------->RAV1(1)                                    --------->ETT(1)      <---------DEAR3(1)   ----------->HVH21                     ---------->ID1  <-----------HVH21      --------->RAP2.6(3) -----ANAC58                <---------ARR14(2)          <---------MYB46(3)    <-----------RAV1(1)<--- -----MYB46(3)              --------->ARR14(2)       --------->MYB52(1) --------->LBD16 <---------ICU4 -----ANAC58       --------------------->WRI1      ---------->DOF2  --------->ARR14(2) --------->ICU4   gtgaggcgacattgcagtttagatagagcatatcgacctcttcgtccccttcgaatagcggtcggaaccggttccggtctctggcggccataattttcag  18440700                               --------->KAN4(2)                              <---------HSFC1(2)                              <---------HSFB2a(1)                              --------->HSFC1(2)                              --------->HSFB2a(1)                              --------->KAN4(1)                              <---------KAN4(1)                         --------->LBD16                         --------->HSFB2a(2)                         <---------HSFB2a(2)                         ------>NtERF2                        --------->ANAC46            --------->YAB1   <---------KAN4(2)   ----------------------->TaNAC69(2)                   <------------CBF                  <---------GLK1(1) <----------DOF2--------->ANAC46                   <---------GLK1(1)                    --------->ATHB12 -----At4g35610 --------->ANAC58                   --------->GLK1(1)                  <---------WOX13(1) ---->At4g35610 --------->ANAC58                 --------->ATHB12                    <------------CBF ---GT1    <-------TEIL<---------LBD16          --------->ICU4                      <------ZmHOX2a(1) ------GLK1(2) --------->SPL7----------->ARR10<------------CBF                    <---------TOE2(3)   cttcttttgaacattcatacgcctctccgcgaacattctcgattccagtattgatttccattgttttgagacggttttgaatttgaggattgatttcagt  18440800                             <---------ANAC55(2)                             --------->HSFB2a(2)                             --------->ANAC46                             <---------HSFB2a(2)                             --------->ANAC55(2)                            ------>ZmHOX2a(2)                            <---------LBD16                           --------->ARR14(1)                           --------->CCA1(2)                           <------ZmHOX2a(2)                          --------->ARR14(2)              --------->ARR11(3)              <---------ARR11(3)             --------->GLK1(1)             --------->CCA1(1)             <---------GLK1(1)      <---------------AtSPL8             <---------CCA1(1)      --------------->AtSPL8             --------->RVE1(1)      --------->MYB59             <---------RVE1(1)  <---------ARR14(2)            --------->ARR11(3)  --------->ARR14(2)            <---------ARR11(3)--------->LBD16                                                     <--          --------->ANAC58<---------ARR11(3)                      <---------ANAC58                ---          --------->ANAC58--------->ARR11(3)                      <---------ANAC58                <--      --------->ANAC58    <---------ARR14(2)                 --------->ICU4                ----------      --------->ANAC46    --------->ARR11(1)             --------->At5g28300          --------->DAG2      --------->AtLEC2    <---------AGP1                ----------->GT1              ---------->DOF2      --------->ANAC58    --------->AGP1<-------TEIL  <---------ANAC46       ----------->GT1      <--   ggtagtccaagcaagatatcttctactagatccggaactaggtacattatagacttgagggtaatttttcttgggaaaaatgtaaaaaaaagtgccaatt  18440900                 <xxxxxxxxxxxxxxxxsmallRNA(i)                --------->DAG2               ---------->DOF2          --------->ANAC58          ----------->GT1                        --------->DAG2     --------->YAB1          --------->ANAC58                   --------->YAB1        <---------AHL20(2) ---------------AG xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <----------DOF2 -------------->AGL3             ----------->GT1---------->DOF2   --------->AHL20(2)       xxxxxxxxxx ---------------AGL2        --------->YAB1  <---------ATHB12   <----------DOF2            <---------- -->CBF<----------ID1    <----------DOF2--------->AHL20(2)     <---------DAG2 --------->WRKY18(1) ---------------AGL1--------->RAP2.6(2) <---------AHL20(2)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <--   ttcaaatttgggacgaaaaaagccgaactttcaaaatgttatttaaatcataaagttttctttgactttttaataagatggtcaagttttgggattgaac  18441000                                                                  --------->MYB46(3)                                                        --------->AHL20(2)                                                        <---------AHL20(1)                                                    <---------AHL20(2)                                                    --------->AHL20(2)                                                   <---------AHL20(2)   <---------bZIP60(1)--------->GLK1(1)            <---------AHL20(1)        --------->AHL20(2)   --------->bZIP60(1)<---------GLK1(1)  --------->ANAC58    ----------->GT1 <---------AHL20(2) xxxxxxxxxxxxx>smallRNA(se3)             --------->ANAC58<---------AHL20(2)--------->AHL20(2) --CBF  --------->AtLEC2       --------->ZAT6      --------->AHL20(2)     <---------AHL20(1)        < -------ICU4     ---------->DOF2      --------->TOE1(2) <---------AHL20(2)--------->AHL20(1)      ---   taatgacctcatgcacacttaaagaaatctctaccactaagctacgacaacaatttaattaatttgtaacaactaatatatatatactaacaaatagcaa  18441100                                        <---------------AGL15                                       ==============================================================                                       ----------------->AGL3                                     --------->ZAT6                                   <-----------GT1                                --------->YAB1                              <---------AHL20(2)             --------->At4g35610         --------->AHL20(2)   --------->AHL20(2)             <---------At4g35610         <---------AHL20(2)  --------->AHL20(2)         --------->ANAC58      --------->AHL20(2)     --------->AHL20(2)  --------->AHL20(1)             --------->ANAC58     --------->AHL20(2)     <---------AHL20(2)  <---------AHL20(2)         --------->ARR11(3)   <---------AHL20(1)     =====    --------->AHL20(2)   --------->AHL20(2)      <---------GLK1(2)      <---------CCA1(2)       ----- -------TEIL             <---------AHL20(1)  ---------->DOF2--------->MYB52(2)<---------AHL20(2)----- ------>YAB1            <---------ATHB12--------------->AGL15<-------GAMYB<---------AHL20(2) <-------   tattcatttaattaaaaatttatgcaataaattaaaataacaccataaaaagaatatcaagtcagttgcagttcatatatttaattttagttaatatacc  18441200  Previous    Next  AGI:  At1g49790.1    Description:  F-box family protein-related. similar to F-box family protein / S locus-related [Arabidopsis thaliana] (TAIR:AT2G43260.1); similar to F-box domain containing protein [Brassica oleracea] (GB:ABD65166.1); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 18439805    to: 18440736    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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