Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           --------->MYB46(3)                                                                                     --------->DOF5.7(2)                                                                                     ----------->HVH21                                                                                   <------NtERF2                                                                                   <---------ANAC58                                                                                   <---------ANAC58                                                                                   <---------ANAC46                                                                                  ------>NtERF2                                                                                 <---------ANAC46                                                                                <------NtERF2                                                                                --------->ATERF1(1)                                                                               ------>NtERF2                                                                               <---------RRTF1(1)                                                                               <---------RAP2.6(1)                                                                               <---------DEAR4(2)                                                                               <---------ATERF1(1)                                                                               <---------ORA47(2)                                                                               <---------ERF1                                                                               <---------DEAR3(2)                                                                               <---------RAP2.3(1)                                                                              <---------RAP2.3(2)                                                                              <---------RAP2.3(3)                                                                              --------->ATERF1(2)                                                                              <---------RRTF1(3)                                                                              <---------RRTF1(2)                                                                              --------->ALFIN1                                                                              <---------ATERF1(2)                                                                              <---------DEAR3(1)                                                                              --------->DEAR3(1)                                                                             <---------ABI4(1)                                                                             <------NtERF2                                                                             --------->ATERF1(1)   <-                                                                             --------->RAP2.3(1)   --                                                                            <---------ATERF1(1)    <-                                                                            <---------RRTF1(1)     <-                                                                            <---------RAP2.3(1)    --                                <---------ARR14(2)                         <---------RRTF1(2)      --                                --------->GLK1(2)                          <---------RRTF1(3)      <-                                --------->ARR14(2)                         <---------RAP2.6(2)     <-       <----------DOF2          <-----------ARR10                          <---------RAP2.3(2)     <- -------ARR10                  <---------GLK1(2)                         --------->MYB52(1)--------->MYB52(1) ---->ARR11(3)             --------->ANAC46                            ---------->DOF2 <---------DOF5.7(2) -----ARR11(3)        --------->YAB1                      ------>ZmHOX2a(1)<---------DEAR3(1)     <-- ----GLK1(2)         <------ZmHOX2a(2)       --------->ZAT6            ==============================   tctccctcgcgttatgaccagcgatcaaaacgcgattcttctcactatctctagctaatcctctcaaacgacgaatagcggcggcgcgtgaacgaacaga  18433600          <---------MYB52(1)                                          <---------ANAC46         --------->LBD16                                        <---------MYB46(3)        <---------HSFB2a(2)                                    <--------P                    <-------GAMYB        --------->HSFB2a(2)                             --------->MYB46(3)                   <-------       <---------LBD16                                  ------>ZmHOX2a(2)                  <------NtERF2    --------->GLK1(1)                                   ============================HOX2a_HOX2a    <---------GLK1(1)                                   --------->ATERF1(1)               ------>NtERF2   --------->MYB52(2)     <---------WRKY18(1)          =============================HOX2a_HOX2a --------ANAC46          ----------->HVH21   ------->GAMYB    <-------GAMYB              <---------DEAR3(1) ------->O2            <---------ANAC58    >>>>>>>>>MYB98     <---------MYB52(1)     --------->SPL7 --------ANAC55(2)     <---------ANAC58   --------->MYB52(1) <---------DEAR3(2)     <---------MYB52(1) --------O2         --------->ARR14(2)    ------>MYB46(1)    <---------MYB46(3)<---------ARR14(2) ------->TGA1a      <---------ARR14(2)    ------>MYB83--------->ARR14(2)       --------->ARR14(2) ------->ANAC55(2)--------->LBD16        ----------->HVH21------>NtERF2        --------->GLK1(2) --------ANAC58  <---------ANAC58        --------->MYB55(1) <---------DEAR3(1)<---------GLK1(1) ----- --------TGA1a   <---------ANAC58       <---------MYB59<------ZmHOX2a(2)<---------REM1(1)--------->ANAC46 --------ANAC58 <---------LBD16         <---------MYB46(2)--------->LBD16    <------ZmHOX2a(1)<------ ---------------------TaNAC69(2)     --------->ZAT18----------->ARR10<---------AtMYB61----------->HVH21 ========bZIP_DOF<---------ANAC46   ----------->HVH21 <---------ARR14(2)--------->ALFIN1 --------->DEAR3(1)   gacgtgagttccggtaattgcggatgcttgactgagaagtgacctaacggagattggatccgccggttgtttaggtgtaggaatccgttcgacgccgtta  18433700                                                                                  ----------->HVH21                                                                                 <-----------HVH21                                                                                --------->ALFIN1                                                                               <-------MYC3                                                                               ------->MYC2                                                                               ------->MYC4                                            <-------GAMYB                      <-------MYC4                                            ============================================MYC_MYB                                           <---------MYB46(3)                  <-------MYC2                                        --------->ALFIN1                      --------->TGA1a                                   <------NtERF2                              --------->ANAC55(2)                                 <---------ANAC46                             --------->O2                                 <---------DEAR3(1)                           <--------ABF1                                <------NtERF2                                 <---------TGA1a          --------->ANAC58      <---------LBD16                               <---------ANAC55(2)   <---------MYB52(1)           --------->ATERF1(1)                           <---------ANAC46  <-----------HVH21            <---------ORA47(2)                             <---------O2 <---------MYB46(3)            <---------RAP2.3(1)                       ----------->HVH21       <--- ----HVH21--------->ANAC58    <---------RAP2.3(3)                 <------NtERF2------->MYC3      ---- ----->DOF2                   <---------RAP2.3(2)          <---------ZAT14  <---------ALFIN1     <--- ---MYB52(1) ------->TEIL     <---------DEAR3(1)           --------->ZAT14----------->RAV1(1) -------   gagcggttagcgacgcaccattcttggataagacggcggagagtgtggttagggatgagagtgaagtcggagagagcgacacgtgtgactggacaagtgg  18433800                                                               --------->ANAC55(2) <---------ANAC55(2)                                                               <---------ANAC46    --------->TGA1a                                                               <---------ANAC55(1) <---------TGA1a                                                               <---------ANAC55(2) --------->O2                                                              <---------LBD16      <---------O2                                                   --------->ALFIN1              <---------WRKY12                                                 <---------DEAR3(2)             --------->WRKY18(1)                                                <---------MYB46(3)             <-----------HVH21                                       <---------TOE1(2)   ==================================MYC_MYB                                       <---------TOE2(2)   <-------GAMYB      <------MYB46(1)                                      <---------MYB52(1)  <---------MYB46(3)  <------MYB83 --------RAV1(1)                 <------MYB83   <---------DREB2C(2)          --------->MYB59 ----->ALFIN1                    <------MYB46(1)--------->MYB55(2)  --------->At4g35610            -- ------REM1(1)              <---------MYB46(3)  <---------DEAR3(1)  <------ZmHOX2a(2)            <--- -->ALFIN1  <------ZmHOX2a(2)   --------->MYB59<---------ORA47(1)   <---------At4g35610          ----   tgttgcccatagcgatccatgagtcgatgctggttcggtcgtaagtttggccggtggagatggttacgggatcagacattaggtcaagtgagattgggca  18433900                                 --------->MYB46(3)                               --------->MYB52(1)                            <------ZmHOX2a(2)          <---------AHL20(2)                            --------->CCA1(2)     <------NtERF2                           <---------ARR11(3)    --------->LBD16                           <---------ARR14(2)    ------>NtERF2                           --------->ARR14(2)   --------->ANAC46 --------->HVH21           --------->AGP1       --------->LBD16                        *TSS ------At4g35610          --------->GLK1(1)    <---------LBD16          <---------AHL20(2)    ------- ----->At4g35610        --------->LBD16        --------->LBD16      <------ZmHOX2a(1) <----------DOF2   tctgaaatggtatggtatttggattccgagatccaacggctctaaattccccggcatttttttttttggaggaattttttgttctgagctttgaagaatt  18434000                                                                 <----------DOF2                                                                <---------ANAC46                                                                <---------ANAC58                                                                <---------ANAC58                                                          <-------MYC2                                                          ------->MYC2                                                          <-------MYC3                                                          ------->MYC3                                                          ------->MYC4                                                          <-------MYC4                                                         --------->TGA1a                                                         <---------TGA1a                                                         --------->ANAC55(2)                                                         <---------ANAC55(2)                                                         <---------O2                                                         ===================bZIP_DOF                                                         --------->O2                                                     ----------->RAV1(1)                                                     --------->DEAR3(1)          <---------ANAC46                                                     <---------ALFIN1            <---------ANAC58                                                  --------->ANAC46        <----------DOF2                                           --------->ANAC58--------->ALFIN1 <-----------RAV1(1)                                        <---------ZAT14  ===================bZIP_DOF          <------                                        --------->ZAT14<---------ALFIN1<-----------GT1        -------                               <---------MYB59    --------->ANAC58  --------->YAB1           <------- <------------CBF              <---------DAG2     --------->ANAC58<-----------TBP<---------ANAC58 -->GLK1(2)                  ------->TEIL  --------->ANAC58<-----------RAV1(1)---------->ID1 --------   tggaattgagagagaaggaaggaagacgatggaccttatctgtgcaggctatgcgccacacgtgtggcttttataactttgttgcttagttcaaattaaa  18434100       --------->ZAT6                                      --------->ANAC58       <-----------GT1   <---------AHL20(2)                --------->ANAC58                         <     --------->YAB1     --------->AHL20(2)                 --------->AtLEC2                       ---   --------->AHL20(2)   <---------AHL20(2)       <---------ZAT6                                   <-- ---AHL20(2)      ------>ZmHOX2a(2)              ----------->GT1                                 <--- -->AHL20(2)     --------->At4g35610         <---------GLK1(2)         --------->YAB1            <--- --AHL20(2)     <---------ARR11(3)     <---------ZAT14    --------->WOX13(1)                   ------ ->AHL20(2)     --------->ARR11(3)  ----------->GT1     <---------ATHB12                  --------->ICU4   ttcaaaataatactatatgatctgaattaattttgagagagtaaacagattgtgttaaatcaagcaaaaactataagaaaaacaaatgaaaaatgatcaa  18434200           --------->AHL20(2)                                                                  <-----   <----------DOF2          ----------->HVH21                                             <---------ANAC46 ---------YAB1       <---------AHL20(2)                                                   <---------ANAC58 ------>YAB1     --------->AHL20(2)                                                       ----------- -------ICU4    <---------AHL20(1)                                                 <---------AHL20(2) ------ATHB12   --------->AHL20(1)                                                 --------->AHL20(1) ------ATHB51  --------->AHL20(2)                                          ----------->GT1<---------ANAC58 --->WOX13(1)--------->AHL20(2)                                  ------->TEIL      --------->AHL20(2)   ttatgcttttaaaaaaaatatatataatgtgtgaaagtttttaagaaactcttcataaaacagaatgaatatatgtattggaaaataaaatagggtgtat  18434300                                                                --------->bZIP60(1)                 x                                                          --------->CCA1(2)                  --------                                                         <---------ARR11(3)                  --------                                  --------->AHL20(2)     --------->ARR11(3)                  --------                                  <---------AHL20(2)   <---------ZAT6                        --------                            <----------DOF2       <---------ANAC46                         <---------ALFIN1 ----ARR14(2)              <---------ANAC58       <---------ANAC58                        --------->MYB46(3) >GT1                      <---------ANAC58       <---------ANAC58              <---------AtMYB61   x   atgaaatattgaaatggaatctaagttttgctttgtttaatttttagttcatgcgtagagatattggtgtcacaattttgttttggtttagaaccacgca  18434400                                                                                                  <--                          <------MYB83                                                           <--- xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                              <--- xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                              ----- ->ANAC46                 <------MYB46(1)                           --------->AHL20(2)        <------ ->AtLEC2                --------->MYB59                            <---------AHL20(2)    <---------ICU4 ->ANAC58       --------->DAG2                                      --------->YAB1       --------->ICU4 ->ANAC58      ---------->DOF2                 --------------------->WRI1          --------------->AtSPL8 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<-----------GT1       <-------TEIL              <---------------AtSPL3   aaaaaaaaaaaaaaaaaaaaagtgtattaggtcatattcacatgttttgttttgttcgattcgttcgtaattaaaactaattgtatttgtacttattccg  18434500  Previous    Next  AGI:  At1g49780.1    Description:  U-box domain-containing protein. similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G19380.1); similar to U-box domain-containing protein [Brassica rapa] (GB:ABV89622.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) Range:  from: 18432574    to: 18433987    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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