Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                ------>ZmHOX2a(2)             <------ZmHOX2a(2)             --------->CCA1(2)            --------->ARR14(2)            --------->ARR11(3)            <---------ARR11(3)            --------->AGP1            <---------ARR14(2)            <---------AGP1          <---------ATHB12          <---------AHL20(2)           --------->RVE1(1) --------->YAB1              ----------->GT1                   <---------ANAC46          ----------->ARR10 <---------YAB1  <---------ICU4    --------->AHL20(2)           <---------ANAC58        ---------->DOF2    <---------ARR11(3)           --------->YAB1               --------->ATHB12     --------->ANAC58      --------->ARR11(3)        --------->YAB1      ---------->DOF2   <---------ANAC58     --------->ANAC58     --------->YAB1  --------->GLK1(2)   --------->ICU4       --------->TOE2(3)   caacaacaagtaaagatctgaattacaaatatcatcaaatcaagaatcaatacaacaataagaaaaaattaagaagaaagagatacctcattggtgtgag  18363400                                                                                             <-------                                                                                             <-------                                                                                       <-------MYC3                                                                                       ------->MYC3                                                   ---------->DOF2                    <---------O2                                               ------>MYB83                           --------->O2                                               -------->P                             <---------ANAC46                                               ------>MYB46(1)                      --------->DEAR3(1)                                             --------->AtMYB61                   <---------ALFIN1                                             <---------MYB111(1)               <------ZmHOX2a(2)<----                                             <---------ALFIN1                 <---------ARR11(3)-----                                             --------->DEAR3(1)               --------->ARR14(2)<----                                             --------->MYB46(3)               <---------ARR14(2)-----                                             <---------MYB55(2)               --------->AGP1 --------                                             <---------MYB111(2)         ----------->RAV1(1) --------                                             <---------MYB46(2)         --------->AtMYB61   <--------                                         <------ZmHOX2a(2)              <---------ALFIN1--------->ALFIN1                                        <---------ARR11(3)             --------->MYB46(3)  <---------RAP2.6(2)                                        --------->ARR11(3)     --------->bZIP60(1) --------->ANAC46                                <---------ATHB12 ------->GAMYB <---------bZIP60(1)<---------At5g28300         ----------->GT1    --------->MYB46(3)--------->MYB55(1)  <---------ICU4--------->MYB46(3)   agaaacaggtatggagataagtctcatccatccaatgaagaagatcaccaacccaaagagtcttgacatcatcaccaccagatccaccgcgtggctgctg  18363500                          <-------GAMYB                         <---------MYB46(3)                       --------->At4g35610                       <---------At4g35610                    <---------At4g35610                    <---------ZAT2                    --------->At4g35610                   <-----------RAV1(1) --ZAT2          --------->At4g35610 --At4g35610     <---------At4g35610 -----ZAT2<---------bZIP60(2)                                                         <---------ANAC58 ---->ZAT2<-----------RAV1(1)                                     --------->ANAC58    <---------ANAC46 -----At4g35610  <---------ZAT2                                   --------->ANAC58 <------ZmHOX2a(1)- ---->At4g35610 <-----------RAV1(1)   <---------ANAC46     <-------GAMYB  --------->ATHB12       ---- ->At4g35610   <---------RAP2.6(2)--------->At4g35610 <---------ARR14(2)<----------DOF2      <------- ->ZAT2   <---------REM1(1)      --------->ANAC58    <------ZmHOX2a(1)--------->ZAT2  <---------ANAC58 ---RAV1(1)   <---------At4g35610--------->ANAC58  <---------TOE2(3)  --------->At4g35610    <-------   ctgactctggtgatgttgctgctgctgctgttgataagcagcgtattgaaactgaggatgctgttgataagcagcttgattgtaaggagcgtattgaggg  18363600        --------->YAB1    <-------TEIL  --------->ARR14(2)  <---------ARR14(2)         --------->YAB1   <-----------RAV1(2) <------ZmHOX2a(1)   <---------REM1(1)       --------->ZAT2                         <---------REM1(1) ---------->GT1      <-----------RAV1(1)  <---------ZAT2                            <-----------RAV1(1) ----->ALFIN1        <---------MYB46(3)   --------->At4g35610              <-----------RAV1(1)  <---- --TOE2(3)        <---------MYB46(3)      <---------At4g35610      --------->MYB46(3)        <------- --ANAC46      <-----------RAV1(1)        --------->ZAT2          ------>NtERF2     <---------MYB46(3)   tgaggatacatcatcatctgttgttgttgcatcatagccatagcagctgcagggtattgctgcatcgcagccatccattgttgttgttgttgccactgtt  18363700                   <---------AtMYB61                 --------->MYB55(2)                 <---------MYB46(3)                <---------DEAR3(1)                <---------AtMYB61                --------->ALFIN1                          --------->LBD16             <---------DEAR3(1)               --------->ALFIN1                    --------->GLK1(2)         <---------At4g35610                <---------MYB46(3)                    --------->ARR14(2)         --------->At4g35610             --------->MYB55(2)          <---------ANAC46         --------->ZAT2                  <---------MYB46(3)         <------MYB83  <---------ARR14(2)         <---------ZAT2                 --------->ALFIN1 <---------ANAC46         ------->TEIL        <-----------RAV1(1) <---------WOX13(1)<---------AtMYB61     <---------MYB46(3)       <---------RAP2.6(2) <---------ANAC58<---------DEAR3(1)       <------MYB46(1)      <---------At4g35610 --------->ATHB12 <---------AtMYB61    <-----------RAV1(1)  <-----------RAV1(1)    <---------YAB1 <---------DEAR3(1)------>NtERF2----------->GT1  <---------MYB46(3)  <---------ANAC46  <---------AtMYB61<---------RAP2.6(2)--------->ZAT6  <---------REM1(1)--------->ALFIN1   ------->GAMYB     <---------LBD16<---------MYB46(3)       <---- -----MYB46(3)<---------ANAC46--------->At4g35610<---------ANAC46  <---------AtMYB61           <----- ----RAV1(1)<---------LBD16<---------ANAC58--------->ALFIN1<---------At4g35610   <---------GLK1(2)   gttgttgttgctgctgcggtggtggtgttgattgctgcaacggtggtggtggtgttgttccggctgatgttggtggtaacactgaatctgttgaaccgtt  18363800                                              ------>ZmHOX2a(2)                                             <------ZmHOX2a(2)                  <-----------TBP           <---------ARR14(2)                <---------------AGL15       --------->ARR14(2)    <------MYB83--------------->AGL15    ------>ZmHOX2a(2)    <------MYB46(1)                     <------ZmHOX2a(2)    <---------ANAC58               <---------LBD16    <---------ANAC58             <----------DOF2                 <---------HSFB2a(1)   --------->MYB111(1)          <---------HSFC1(2)               --------->HSFB2a(1)   <---------MYB46(3)           --------->HSFC1(2)               --------->HSFC1(2)   --------->MYB46(2) <---------TOE2(3)--------->ARR14(2)        <---------HSFC1(2)   <---------AtMYB61 ---------->DOF2   <---------ARR14(2)  <---------LBD16                      <---- -----MYB46(3)  <----------DOF2 --------->HSFB2a(1)  <---------ANAC55(2)                        ----- ----MYB52(1)------->TEIL       <---------HSFB2a(1)  --------->ANAC55(2)                     ------->TEIL   gttgtttggtgtctgcatctttttaaagtatggaactttcggatccgatctggttacgagactcggaaacttcggtctctctctctctcgatatgtatgt  18363900                                                           <---------TOE1(3)            <------NtERF2                          <------ZmHOX2a(1)                <---------TOE2(3)          <---------ANAC46                --------->ANAC55(2)                    <----------DOF2                <---------DEAR3(1)               <---------TOE2(3)                     <------MYB83                    <------NtERF2  ---------->DOF2  --------->MYB52(1)                <------MYB46(1)                 --------->ATERF1(1) -------RAV1(1)--------->MYB59                 ----------->ARR10         <------ZmHOX2a(1) ---->ALFIN1   <---------TOE1(3)           <------ZmHOX2a(1)      <----------DOF2  <---------DEAR3(1)   gttggaaagggtttgtttaggtaatggaggagaccgagagagagaggattagatttggtttatggtttctttggaggataatatggaggcggagagagag  18364000                        <---------GLK1(2)                        --------->ARR14(2)                   <---------ANAC46                                                                 <                 <---------ANAC46                                                                   =              <-----------RAV1(1)                                                             <------            <---------ANAC46          <---------TOE1(3)                <----------DOF2      <--------          --------->ZAT14 <-------TEIL<---------TOE2(3)                <---------DAG2      <---------AtMYB61          <---------ZAT14--------->ARR14(1)                            ==============================         <---------ZAT6 <---------ARR14(2)                  <----------DOF2--------->MYB59 --------->ALFIN1     --------->ZAT14    --------->ARR11(1)        <------------------------ANAC81      <---------ZAT14     <---------ZAT14  ----------->ARR10   <----------DOF2   =========================================   agaagagagtagtgttgtgttgtgtagattcggagggtttaaggcttttttttttttttgttctttggtttcgcttttaggtctgagagagaagtggtgg  18364100               <---------ANAC58               <---------ANAC55(2)               <---------ANAC58               <---------ANAC46                     <---------HSFC1(2)            <---------MYB52(1)                      --------->HSFB2a(1)      --------->PCF2                                <---------DEAR3(2)      ------>NtERF2                                 <---------MYB46(3)     --------->TCP20                                --------->HSFC1(2)     <---------PCF2                             ----------->HVH21     --------->TCP15(1)                        ------>ZmHOX2a(2)    <---------TCP15(2)                         --------->DEAR3(2)  --------->ALFIN1                            --------->CCA1(2) ------->MYC2  --------->ANAC58               <------ZmHOX2a(2) ------->MYC3  --------->ANAC58              <---------ARR14(2) <-------MYC3  <---------ANAC55(1)     <----------DOF2 <-------MYC2 --------->MYB59        ------->TEIL  <---------DEAR3(1) ---------TGA1a--------->ANAC55(2)<---------ANAC55(2) --------->ARR14(2) =================================================bZIP_DOF                                         <- ---ANAC46  <---------ARR14(2)    --------->ANAC55(2) <---------ARR14(2)                       >>>>>> -MYB46(3)  --------->ARR14(2)   --------------->AtSPL8  <---------YAB1                       ------- =========bZIP_DOF      --------->ANAC58     --------->AGP1                      ----------->HVH21 <- =========bZIP_DOF      --------->ANAC58     --------->ARR14(2)                 <--------P <---------   gaacgtggggcccagttacgtaagtgaagccatgttatgtacttttagatccgacggttctgattcgaccgtatttttaggggttgacatcaacttttga  18364200                                   --------->AHL20(2)                                   <---------AHL20(1)                                   --------->AHL20(1)                                   <---------AHL20(2)                                  --------->AHL20(2)                                  <---------AHL20(2)                              <--------P <---------ANAC58                        <---------ARR14(2)                        --------->ARR14(2)                     --------------->AGL15                     <---------------AGL15                    <-----------------AGL2                    ----------------->AGL2    <---------YAB1  ----------------->AG <---------ANAC58 ------GAMYB        ----------------->AGL1 >>>WRKY18          <-----------------AGL1                                                     <----- ---->HVH21        <-----------------AGL1<---------ANAC46                             --------->ICU4 --------At4g35610 <-----------------AG--------->ARR11(3) --------->ARR11(3)          <---------YAB1 -DOF2   --------->ATHB12   ----------->GT1        <---------YAB1                   --------->YAB1   cagttgatgaatgatttaagttcccaaatcgggtaaataaatttcttgggattataaatggatattgaaaccaatagagagacatatgatgatgagactt  18364300  Previous    Next  AGI:  At1g49600.1    Description:  ATRBP47A (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA binding. similar to ATRBP47B (RNA-BINDING PROTEIN 47B), RNA binding [Arabidopsis thaliana] (TAIR:AT3G19130.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47776.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 18360554    to: 18363818    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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