Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 <----------DOF2              --------------->AGL15              --------->TOE2(3)                    <---------ZAT18        --------->TOE1(2)<---------ARR14(2)              <---------------AGL15            --------->ATHB12           <---------LBD16  --------->ARR14(2)             <-----------------AGL1           <---------ATHB12           <---------bZIP60(2)            ------>MYB83                  --------->MYB46(3)             ----------->RAV1(2)            ------>MYB46(1)          <------MYB46(1)                  ----------->HVH21    --------->GLK1(2)  <----------DOF2                    <------MYB83  --------->ZAT18<---------DAG2           <--------- --->ANAC58 -------->P              <---------MYB46(3)     --------->ANAC46               <---------GLK1(2) --->ANAC58------>ZmHOX2a(1)       --------->ALFIN1<---------ZAT14<----------DOF2 <-------GAMYB  <---   taagctttaagtcctacctttgaaggcaaacttggaagtgggtaaccaatgagtgcaattcacagaagctttatgacctgggagcgttgtaagaatctgg  18340800                                                                         <---------YAB1                                                                    --------->ATHB12                                                                   --------->ICU4                                                           <----------DOF2                         --                           --------->ANAC46--------->AHL20(2) --------->HSFB2a(2)   --------->CCA1(2)                    ---------->DOF2 --------->ANAC58      <---------ANAC58         <----------ID1<--- --ARR10       --------->AHL20(2)   --------->ANAC58      <---------ANAC58 ---------->DOF2       ---- ------ZAT18 --------->TOE2(3)      --------->ANAC46  <----------DOF2--------->ARR11(3)     ---------   gcagtctgaaaaaaacattaaacaaagacacaaaacacacccaaaaaaaatcacatctttgcttttggaatgattttgaaagagagagacaagagtggaa  18340900                                                             --------->At4g35610                                                             <---------HSFB2a(1)                                        --------->ANAC58     --------->HSFC1(2)                                        <------NtERF2        --------->HSFB2a(1)    <---------ARR11(3)               --------->ZAT18         --------->ZAT2 ------->MYB52(1)             <----------DOF2   --------->CCA1(2) --------->LBD16                   < ------MYB52(2)              <---------ANAC46  <----------ID1<---------At4g35610          <-------GAMYB ----->MYB46(3)            ------->GAMYB--------->ANAC58     <---------HSFC1(2)          <-----------RAV1(1) >ALFIN1                --------->MYB52(1) ---------->DOF2 <---------GLK1(2)     <-----------GT1   --   caaacagaccttagggcagaaaacagcaacggcgttttgggcaccgaaagagacaagaccagaagctccccaagagacgttattgacgactctgttgcat  18341000                                                                                                    <                                                                                                    <           --------->ZAT6                              --------->YAB1                               <      <---------TOE1(2)                         <----------DOF2       <---------YAB1            -----     ------>ZmHOX2a(1)                       <---------ARR11(3)   <---------DAG2              ------- ---------At4g35610                      ----------->HVH21   <------ZmHOX2a(1)            ------>ZmHOX2a(1) ---->ZmHOX2a(1)             <----------DOF2 --------->ARR11(3)   <----------DOF2         ===========   cctgctcctatgaacactctcttcgcttcgacttttgtgttttctgacatctttttatcagaaggagactttttgattacgaagtttatctccttcgatc  18341100                                ------>NtERF2                                --------->LBD16                               <---------ANAC46                               --------->LBD16                              <------NtERF2                              --------->ATERF1(1)                              <---------LBD16                             ------>NtERF2                             <---------ATERF1(1)                             --------->ABI4(1)                            --------->RRTF1(2)                            --------->RRTF1(3)                            <---------ATERF1(2)                            <---------DEAR3(1)                            --------->RAP2.3(3)                            --------->RAP2.3(2)                            --------->ATERF1(2)                            --------->DEAR3(1)                           --------->ORA47(2)                           --------->ERF1                           --------->RRTF1(1)                           --------->DEAR4(2)                           --------->RAP2.6(1)                           --------->ATERF1(1)                           --------->RAP2.3(1)                           <------NtERF2                          --------->DREB2C(1)                          <---------RAP2.3(1)                          <---------DEAR4(2)                          <---------DREB2C(1)                          ------>NtERF2                          --------->At4g35610                          <---------ATERF1(1)   <------NtERF2         <---------ATERF1(2)  ------>NtERF2          --------->ANAC46                --------->ICU4     --------->DAG2 <---------ATERF1(2)     <---------DEAR3(1)         ----------->GT1        --------->DAG2 --------->ATERF1(2)     --------->DEAR3(1)       --------->ICU4          ---------->DOF2 ---------ANAC58         --------->RAP2.6(2) --------->LBD16          --------->LBD16 ---------ANAC46        --------->DEAR3(2)   ------>NtERF2           <---------LBD16          <------ZmHOX2a(1) ---------ANAC58        --------->RAP2.3(1) <---------LBD16        <-------TEIL         *TSS -------- ->ZmHOX2a(2)           --------->ERF1      --------->LBD16       --------->CCA1(2)   --------->ANAC58 -->ARR11(3)            --------->MYB46(3) <---------LBD16        --------->GLK1(2)   --------->ANAC46 ==HOX2a_HOX2a    <-----------GT1<------NtERF2<------NtERF2    <---------YAB1         --------->ANAC58   ttgctggcagaaaccagtattatctagccgccgccgggaaaactcgccgggaattagtaattcttaagattcagggaaaagggtgagcaagcaagaggag  18341200                                                                                         ----------->HVH21                                                                                       <---------ANAC58                                                                                       ----------->GT1                                        <------MYB83                                   <---------ANAC58                                        <------MYB46(1)                               <---------MYB46(3)                                  <------NtERF2                                    --------->ATHB12                                ----------------->AGL1                   <---------TOE2(2)                                <-----------------AGL1                   <---------TOE1(2)                         <---------AHL20(2)                              <---------TOE2(3)                        --------->AHL20(2) ------------>CBF      <------------CBF<---------WOX13(1)   <---------TOE2(3)<---------KAN4(2)  --------->MYB59    <---------ATHB12      <------------CBF --->GT1   ---------->DOF2    <----------ID1  <------------CBF------------>CBF --------->ATHB12   aaacaaaggttagaaaagagggaatattaaatgggccgaattaggtccaattgggcccaaatcatccaattgacttaggtttcattgatgggtgacattt  18341300                                                                                      --------->AHL20(2)                                                                      <---------AHL20(1)                                                                      --------->AHL20(1)                                                                      --------->AHL20(2)                                                                 --------->ICU4       --------->AHL20(1)                                                                 <---------YAB1       <---------AHL20(2)                                                               --------->YAB1        --------->YAB1            <---------AHL20(2)                         <---------AtLEC2           ------>MYB83           <---------AHL20(2)                          <---------ANAC58         <---------MYB59           --------->AHL20(2)                          <---------ANAC58   <-----------GT1    --------       --------->ICU4                              <---------ANAC58   <---------AHL20(2)--------->YAB1  --------->YAB1 <---------ANAC58                  <---------ANAC58  --------->AHL20(2)<---------YAB1  ----------->GT1<---------ANAC58                --------->ARR11(3) <---------YAB1------>MYB46(1)   actatcgtaacaattaaatgagtgtccatttgagagacctctggttttgtagttcttgcatgttatagtgattatattactaccaaattataatatcaaa  18341400                                                                                      --------->LBD16                                                                                      <------NtERF2                                                                                     --------->ANAC46                                   --------->ANAC58                                 <---------LBD16               --------->YAB1 --------->DAG2                                      <---------ARR14(2) <----------DOF2  --------->YAB1   --------->ANAC58                         --------->DAG2 <---------------AGL15  <-----------RAV1(2)                           <---------TOE2(3) ->YAB1   --------->AHL20(2)<--------P           <-----------GT1   --------->ICU4 --------->ARR14(2)   atactttactaagaaaataatcaaactcaggtaaggcaagtcagaaaatttatactaattttaagtgtatttatggataaggcatgtccgcgatatatgt  18341500                                                                                  <---------WRKY18(1)                                                                                <---------WOX13(1)            --------->TOE1(3)                                                 --------->ATHB12            --------->TOE2(3)                                                --------->ICU4          -------->P                                                        <---------TOE2(3)          ------>MYB46(1)    <---------ZAT14                               --------->YAB1      ------          ------>MYB83       --------->ZAT14                         <---------ANAC58         -------         <---------ALFIN1   <---------REM1(1)                        <---------ANAC58       <--------  --------->MYB46(3)--------->TOE2(3)                       <------ZmHOX2a(1)<---------YAB1 <-------- --------->ANAC58  --------->ANAC58                        ----------->GT1--------->ICU4<----------DOF2 --------->ANAC58  --------->ANAC46               --------->AHL20(2) <---------ANAC46   --------->TOE2(3) --------->ANAC46  --------->ANAC58           ----------->GT1       <-----------------------TaNAC69(2)   tacacccatcccaaccttcaaacgtcaatagtgtagcaccaattggatgagttaaattagtaggataaatggcgtattgatgattgactgccttaaggtt  18341600        --------->AHL20(2)       <---------YAB1                                                        ---------->DOF2    <---------YAB1          <------ZmHOX2a(1)                             <---------------------WRI1    <---------AHL20(2)   <-----------RAV1(2)                         <---------GLK1(1)    --------->AHL20(2)   <---------LBD16 <---------HSFB2a(2)         --------->GLK1(1) --->DOF5.7(2)        <---------GLK1(1)  --------->HSFB2a(2)       <------ZmHOX2a(1)          <------ -->TOE1(3)--------->AHL20(1)      <------ZmHOX2a(1)       --------->HSFB2a(2)           <---------ARR11(3) -TOE2(3)  <---------AHL20(1)   <-----------RAV1(2)        <---------------AGL15         --------->ARR11(3) -TOE1(3)<---------AHL20(2)--------->At4g35610             <---------HSFB2a(2)       ---------->DOF2   aactatattattatatattagacgatatcaggagacaggagtactagaaaattttctactactagacgaggaaatcagagaaaggctcaaagatgtctcg  18341700  Previous    Next  AGI:  At1g49540.1    Description:  nucleotide binding. similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G11160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42201.1); similar to hypothetical protein OsI_028698 [Oryza sativa (indica cultivar-group)] (GB:EAZ07466.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ50836.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 18337308    to: 18341188    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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