Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          ----------->RAV1(1)                                                                                        ------>MYB46(1)                                          ------------------------>ANAC81               ------>MYB83                             --------->ANAC58                                        --------->ANAC46                        --------->At4g35610--------->ANAC58                          --------->ANAC58                 --------->ZAT6       --------------->AtSPL8               --------->HSFB2a(2)      -                 <-----------GT1    <-----------GT1                        <---------HSFB2a(2)   ----            <---------DAG2   --------->ANAC46                              >>>>>>>ZML2 --------->ANAC46    ---------->DOF2     <---------At4g35610--------->ANAC58             <---------ARR14(2)<---------ALFIN1 ----GT1    <----------DOF2  --------->ANAC58                   <----------DOF2      --------->ANAC58   aaaaaaaaaagacactttatcacttcatctcactcaattttcagtacccaaaaaacaaaatcacatctttggcagttctagactcaaacccaacaccagt  18319900                                                                       --------->MYB52(1)                    ------>MYB83 ---------->DOF2                   --------->WOX13(1) ------>ZmHOX2a(1)  ------>MYB46(1)  --------->MYB52(1)          <------ZmHOX2a(2) -------->TOE2(3)----------------->AGL2--------->ANAC58         --------->ARR11(3) ----->ARR14(2)  ----------------->AGL3--------->ANAC58         <---------ARR11(3)         ----------   ttcctcaattttgtcagaaaccaaatacagaaccaaaaagaacgaaacacaatttgagagagaagagatcaattaccagacgcttgtgttgaagaaagga  18320000                                                                                          --------->ANAC58                                                                                          --------->ANAC58                                                                                --------->ATHB51                                 <---------ARR14(2)          --------->CCA1(2)  <--------HAHB4                                 --------->ARR14(2)       ----------->GT1       <---------ICU4                              <---------ANAC46        ---------->DOF2           -------->ATHB1                   ---------->DOF2                --------->At5g28300          <---------YAB1            <-------MYC3 <---------ANAC58        ----------->GT1       <---------PCF5--------->ANAC58    <---------KAN4(2)    --------->ALFIN1       --------->ZAT6 ---------->DOF2 --------->ICU4       < >DOF2      ------->MYC3 <---------ANAC58     ----------->RAV1(1)      <---------PCF2--------->ANAC58   agagagaataaacatgtggaagaaagagcgtggcatattcagataaatcaacagtaaaaagagataaaaggagggaccagaattattaagccaaggaaga  18320100                             <---------ARR14(2)                        --------->LBD16                       <---------ANAC46                      <---------LBD16                      <---------------------WRI1                      <------NtERF2                      --------->ATERF1(1)                     ------>NtERF2                    <---------DEAR3(1)                    ------>ZmHOX2a(2)                    --------->DEAR3(1)                   <------ZmHOX2a(2)                      <----                    --------->ANAC46                     --------->CCA1(2)               <---------WRKY38(1)               <-----------GT1                          --------->AGP1                   <---------WRKY12             --------->AHL20(2)    --------->ANAC58     <---------ARR11(3)              <<<<<<<<<<WRKY26             <---------AHL20(2)    --------->ANAC58     <---------ARR14(2)              <<<<<<<<<<WRKY43        <------ZmHOX2a(2)    --------->GLK1(2)          <---------AGP1                  <<<<<<<<<<WRKY38       --------->ARR11(3)    --------->ARR14(2)         --------->ARR11(3)        <----------DOF2       <---------ARR11(3)<------NtERF2                  --------->ARR14(2)       <---------ANAC58      --------->GLK1(1)--------->DEAR3(1)    <----------DOF2                     <---------ANAC58 -----------HVH21--------->ANAC46--------->LBD16       <---------CCA1(2) <---------TOE2(3)      <----   tgggtcagagatcatttaaacgacgccggagaatccgaagcaaaacccttttacttcagatctgaaaccagttttaagtttttgcttttggtcaaatggc  18320200                                             <---------ARR11(3)                                             <---------AHL20(1)                                             --------->AHL20(1)                                             --------->ARR11(3)                                            <---------AHL20(2)                                       --------->TOE2(3)        <---------ALFIN1            ----------->RAV1(1)      <---------ALFIN1              ------>MYB46(1)      --------->ANAC58              ------>MYB83      --------->ANAC58            --------->MYB46(3)    <---------ALFIN1              <---------MYB59                           <---------WRKY18(1)     <  --------->AtMYB61           ----------->HVH21         ----------->GT1 ------>MYB46(1)             < -----ANAC58                ====================RAV   ---------->DOF2   -------->P               <--- -----ANAC58                ----------->RAV1(2)     <---------TOE2(3)   ------>MYB83      ---------->DOF2   tcgaccacacacactctctctctggtttaagcctgacccaacataaatatttttaagaaagaaaaaaaaaaaccaacttgaccttgaaaaaaaaaagctt  18320300                                                        --------->ANAC55(2)                                                        <---------ANAC46                                            <---------At4g35610                                        <-----------HVH21                                   --------->ARR14(2)   <---------ANAC58                                   <---------ARR14(2)   <---------ANAC58                           --------->ANAC55(2)--------->WRKY38(1)                           --------->ANAC58 --------->At4g35610                                     -                           <---------ANAC55(2)--------->WRKY12                     --------->AHL20(2)                           --------->ANAC58 <-------GAMYB                          <---------AHL20(2)             *TSS         --------------->AGL15         <---------ANAC55(1)  --------->At4g35610    < ---------ANAC58         <-----------------AGL1         <---------ANAC55(2)  <---------At4g35610   -- ---------ANAC58       <---------WRKY18(1) --------->MYB52(2)             <---------MYB52(1)     ---- ------WRKY18(1)      ----------->HVH21 <---------MYB52(1)              <---------MYB46(3)     <-----   gagcgtgtcaatgtgtgtttctccttgactcgtaatggaaccggtgagttgactcgtttcgtgtttttgttttttggttagctaattaaaaacttatcgt  18320400                                                                                            ---------                                                                                            <--------                                                                                       <---------AHL20(2)                                                                                       --------->AHL20(2)                                                                                       --------->AHL20(1)                                                                                    <--------ATHB1                                                                                    --------->ATHB51                                                          <---------YAB1            <---------ICU4                                                         --------->AHL20(1)        <---------YAB1                                                         <---------AHL20(1)        --------->ICU4                                                     --------->AHL20(2)          --------->YAB1                         --------->ICU4              <---------AHL20(2)         <---------YAB1                       ------>MYB83              <---------YAB1 ---------->ID1 --------->AHL20(2)   <             <----------DOF2  <-----------GT1    <---------AHL20(2)           --------->CCA1(2) <----   <---------ALFIN1    ------>MYB46(1)           --------->AHL20(2)         <------ZmHOX2a(1)  <----- ------>NtERF2       <---------MYB46(2)         --------->AHL20(2)        <---------TOE2(3)<---------AHL20(2) -------->ANAC46     <---------MYB59<----------DOF2 <---------YAB1   <----------DOF2<---------AHL20(2) ---------ALFIN1     <---------MYB111(1)        --------->AHL20(1) ------>ZmHOX2a(1)--------->AHL20(2) ------->MYB46(3)   --------->ANAC46<---------DAG2  --------->ICU4 --------------->AGL15--------->AHL20(2) ----->PCF2  <---------DAG2  <-----------GT1    <---------AHL20(1) <---------------AGL15<---------AHL20(2) ----SPL7   <---------DAG2<---------ICU4 ---------->ID1<---------TOE2(3)---------->DOF2<---------AHL20(1)   ccccaccatcttccccttttccacctaatttttatctccttttttcgcaatataattaatatttttgtcctctttaaaggatataataatttatttattt  18320500                                                                                         <-----------                                                                                         ------------                                                                                     --------->AHL20(2)                                                                                  <--------HAHB4        <----------DOF2                                                           -------->ATHB1        <---------DAG2                                                            <---------ICU4       <---------ANAC58                                                           --------->ATHB51       <---------ANAC58          --------->YAB1                                   --------->YAB1   <---------ANAC58           --------->YAB1                                     --------->ICU4   <---------ANAC58    --------->MYB52(1)                                     --------->ICU4 >AHL20(2)             <---------DOF5.7(2)                                   --------->ANAC58 -AHL20(2)           --------->DOF5.7(2)                                     --------->ANAC58 ----------DOF2   <---------TOE1(3)  <----------DOF2               <---------YAB1<---------YAB1 -------GT1       <---------TOE2(3) <---------ICU4                <---------AHL20(2)<---------YAB1 ------GT1       ---------->DOF2<---------YAB1 --------->YAB1    --------->YAB1--------->YAB1   ccctttcttgctttttttttaaagttaacggattataatctttatgctatcaaaaaaaaaaactagattataattcagcaagaattattatttagtacaa  18320600                                       <---------AHL20(2)                                      --------------->AGL15                       <---------AHL20(2)                   --------->YAB1     <---------------AGL15                 <---------AHL20(2)   --------->AHL20(2)                 --------->AHL20(2)  <---------YAB1      <---------AHL20(2)                --------->YAB1    --------->AHL20(2)    --------->AHL20(2)         <---------AHL20(2)       <---------AHL20(2)--------->AHL20(2)        --------->AHL20(2)   <---------YAB1  ----------->GT1                                <--------     <---------CCA1(1)--------->AHL20(2)    --------->DAG2                         --------->TOE2(3)    --------->ARR11(3)<---------AHL20(2)   ---------->DOF2 <---------YAB1    --------------->AtSPL8    <---------ARR11(3)<---------AHL20(1)  <---------AHL20(2)   ----------->GT1   <-------TEIL--------   <<<<<<<<<RAP2.2<---------YAB1  --------->AHL20(1)<---------AHL20(2)       <---------------AtSPL8 < ----AtSPL8 <---------AHL20(2)   <---------AHL20(2)<---------AHL20(2)   <-------MYC3        --------- --->AtSPL8 --------->AHL20(2)   --------->AHL20(2)--------->AHL20(2)   ------->MYC3  --------->YAB1<   attttagatattatataattttaataaaattctaattttattatataaagtaaaaaaatttaaaattgttaacacatgttaagtacattaatgagatatc  18320700                                         ----------->GT1                                <---------AHL20(2)                                --------->AHL20(2)                            <---------AHL20(2)                          <---------AHL20(2)                         <---------AHL20(1)                      --------->LBD16     <<<<<<<<<MYB98      <---------ARR11(3)                     --------------->AGL15 -ARR11(3)               <---------AHL20(2)            <---------ICU4                    <-----------RAV1(1) ->GLK1(1)               --------->AHL20(2)           <---------YAB1                   ----------->RAV1(2) ---------ARR11(3)       --------->ARR11(3)           --------->ICU4              --------->WOX13(1) >ARR11(3)               --------->AHL20(1)    <---------ICU4  ----------------->AGL3--------->YAB1 ---------AHL20(1)----------->GT1<---------AHL20(2) --------->YAB1   ---------->DOF2<---------ATHB12   aatatatgttaaatctaattttgttaatatattttttaatagaagataaaaatttcataattctatccgaataaagaacaagttcaatcatctggtggaa  18320800  Previous    Next  AGI:  At1g49480.1    Description:  RTV1 (RELATED TO VERNALIZATION1 1); DNA binding / transcription factor. similar to VRN1 (REDUCED VERNALIZATION RESPONSE 1) [Arabidopsis thaliana] (TAIR:AT3G18990.1); similar to reduced vernalization response 1 [Brassica rapa] (GB:AAR92199.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) Range:  from: 18317846    to: 18320313    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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