Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              <---------ANAC46                      ---                                                           <---------AtMYB61                     <---                                             --------->AHL20(2)                                 <----                                            <---------AHL20(2)                                  -----                                            <---------AHL20(1)                                  <----                                  <---------ANAC58       --------->ALFIN1                       -----                                  ===============================MYC_MYB                        <----                                  <-------GAMYB        <---------ANAC46               --------->YAB1-                                  <---------ANAC58     <---------At4g35610          <---------ZAT14 -          --------->YAB1         <------MYB46(1)       <---------TGA1a  <---------ATHB12<---------ZAT6         <---------ATHB12        <------MYB83<---------AHL20(2)    --------->YAB1   --------->ZAT14 <    --------->At5g28300          <---------MYB46(3)    --------->At4g35610   ----------->GT1    -----   ----------->GT1          --------->ATHB12--------->AHL20(2)  --------->WOX13(1)<---------YAB1<----  --------->ZAT6 ================================================bZIP_DOF--------->ATHB12   --------- -->ARR11(3)     ---------->DOF2<---------AtMYB61      ==============================================   ttgaacagtaaatcataaacaaagaaaaactgatttggttgcacaatttaattagtgaggtgaggtctatcacaatcactggttactatagtgataaaga  18294300      <---------YAB1    <---------ICU4   --------->ICU4 --->ZmHOX2a(2) ---ZmHOX2a(2) -----ARR14(2)                                                                                  <---- ---->ARR14(2)                                                                                 ------ -----ARR11(3)                                                                                 <----- ---->ARR11(3)                                                                                <------ -----GLK1(2)                <---------ANAC46                                              <---------AHL20(2) ----->ZmHOX2a(1)           <---------AtMYB61                                              <---------ARR11(3) -------->ICU4       --------->At4g35610                                                   --------->ARR11(3) ---------YAB1       <---------At4g35610               ------>ZmHOX2a(2)                   --------->AHL20(2) ---->ARR14(3)       <---------ZAT2                  --------->ARR11(3)                    <---------AHL20(1) -----ARR14(3)       --------->ZAT2                  <---------ARR11(3)         <---------AHL20(2) ->DOF2          <-----------HVH21  --------->ZAT6 <---------ATHB12      <-----------GT1   --------->AHL20(1) ==bZIP_DOF--------->At5g28300 <---------------------WRI1      <---------YAB1   --------->AHL20(2)   tcctgattatgacagtgactgtgagctggtgaggtctaagagtacaaaaacaaatgatctaagttatcaaactataaactatataattcgaaatatatta  18294400                         --------->AtLEC2                         --------->ANAC58                        <---------ATHB12                         --------->ANAC58                 <------MYB46(1) ----------->GT1       <---------AtLEC2                   <------MYB83 <----------DOF2   <-----------GT1 -----AHL20(2)         <---------ANAC58                  --------->MYB59--------->ZAT14<----------DOF2 --->AHL20(2)          <---------ANAC58                  <---------MYB46(3)          <-------TEIL ----AHL20(2)     ------>MYB46(1)                        <---------AtMYB61       <---------TOE1(3) ---AHL20(2)      ------>MYB83          ----------->GT1<---------MYB52(1)        <---------TOE2(3)   attttgttaaatccaaaaccaaattgcatgcaaatggtcagtttgtaaatagtctacgtttggtccaattactctttactcttaaggttctttactatat  18294500                                                                                                    -                                                                                                -----                                                                                               ------                                                                                           <---------                                                                              ---------->DOF2  <-----     ------>MYB83                                                   --------->MYB46(3)     ------>ZmHOX2a(1)     ------>MYB46(1)                                <---------AHL20(2)    ---------->DOF2------------   tcaaacccactaaatctacttgcatataacacatagagacacaaaaattagtatttaaaacatttagataacaaacaaaagaaagagaggctcctaataa  18294600      --------->AHL20(2)      --------->YAB1  <------NtERF2                                                                    <---------GLK1(2) -------->RAP2.6(2)                                                              ------------>CBF ----->DOF2                                                                     --------->TOE2(3) ---->DOF2                 ------------>CBF                                     ------->GAMYB      -- ------AGL15             --------->ANAC46                                      --------->MYB46(3)  -- ----ICU4      <-----------HVH21                  <------------CBF        --------->YAB1           <- ----->AGL3--------->MYB52(1) <------------CBF  --------->ARR11(3) ------>ZmHOX2a(1)              ---   aggcgcaattaaaaaccggtcagaaatacaccaattgtgagactcaagaagttattgctcaactacttcctctaactcataaccacaatctccaaacttc  18294700                                                     --------->YAB1                                         <---------AHL20(2)           *TSS                         <---------AHL20(2)    --------->ARR14(2)               --------->AHL20(2)                         <---------ARR11(3) ------->DEAR3(1)         --------->TOE1(3) <---------ICU4                     <---------CCA1(2) ------->AtMYB61          --------->TOE2(3)<---------YAB1---------->DOF2      ------>ZmHOX2a(1) --------ALFIN1        <-----------GT1  --------->AHL20(2)              <---------ALFIN1        <---- ------>MYB46(3)<----------DOF2    --------->TOE2(3)<---------ATHB12    --------->ZAT6        ------>ZmHOX2a(1)   accaccgattcacagagacttttattaaccttcaaaacattatttattattccaatcttcaaagagagacactcacactccttatcttcttcattcctcc  18294800                                                                  --------->LBD16                                                                 <------NtERF2                                                                 <---------ANAC46                                         <---------AHL20(1)     <---------LBD16  <---------MYB46(3)                                         --------->AHL20(1)     --------->LBD16  <------MYB83          <<<<<<<<<TBF1        ------>ZmHOX2a(1)                ------>NtERF2   <---------AtMYB61      <-----------GT1 <---------ZAT6<---------DAG2             --------->DEAR3(1)<------MYB46(1)   --     <<<<<<<<<<GT-3b  ----------->GT1 --------->AHL20(2) <----------DOF2     <-----------RAV1(1)   -- ------>ZmHOX2a(1)---------->DOF2   <----------DOF2   <---------ARR11(3)     <---------MYB46(3)------ -----ALFIN1  --------->ANAC46--------->TOE2(3)       --------->ARR11(3)  <-----------RAV1(1)  ------   atcctatttttcttcttcgccaaagtgttattcctcaactttatatattacacaaatgtctttagccgcggataatgtgttgttggtggaagaaggaagg  18294900      <---------At4g35610                                                  -------->P      --------->At4g35610                                                  ------>MYB46(1)    <-----------RAV1(2) <------NtERF2                                      ------>MYB83  ----------->RAV1(1)   <---------SPL7             ---------->DOF2         --------->MYB52(1)  <---------ALFIN1      ----------->HVH21      --------->ANAC58      ------>ZmHOX2a(2) --------->MYB46(3)    --------->RAP2.6(2)     --------->ANAC46     <---------GLK1(1) ------->ANAC58     <---------SPL7          <---------ARR14(2)     <---------ARR11(3)              -- ------->ANAC58    --------->MYB46(3)  ----------->GT1             --------->ARR14(2)              <- --->ANAC58    <-------TEIL    <----------DOF2 --------->ANAC58 --------->HSFB2a(2)      <---------YAB1 --->ANAC58<---------KAN4(2) ----------->GT1--------->ARR14(2)  ------>ZmHOX2a(1)    <---------GLK1(2)   ccagccacagcggaacatccatcggccggaccggtttatcgatgtaaatacgctaaagatggcctcctcgatctccctaccgatattgattctccttggc  18295000               ------>ZmHOX2a(2)                                                     --------->YAB1             <---------ARR11(3)                                                     <---------AHL20(2)             <---------AGP1                                                         --------->AHL20(2)             --------->ARR14(2)                                              ----------->GT1             <---------ARR14(2)                                              <---------At4g35610             --------->ARR11(3)                                              --------->At4g35610             ------->TEIL             <---------YAB1                        --------->ANAC58     <---------TOE2(3)              --------->YAB1                          --------->ANAC58     --------->MYB59             --------->YAB1                     <---------WOX13(1)  <-----------GT1  <----------DOF2               --------->AHL20(2)               <---------YAB1    --------->AHL20(2) ------->ARR14(2)        <----------DOF2        --------->AHL20(2)  <---------YAB1 <---------AHL20(2) --------ARR14(2)   <-----------GT1<---------YAB1     --------->MYB59  <---------TOE2(3)--------->YAB1   agttctttaggtatggatcttgataccctttacatttattatacttaaaaaaaaattcggttcaatgctgattaatgtaagctaaattaataacaattct  18295100              <---------AHL20(2)             <---------AHL20(2)             --------->AHL20(2)        <---------ANAC55(2)                                                      <---------ARR14(2)        --------->ANAC55(2)                                                      --------->ARR14(2)      --------->CCA1(2)                                                         --------->CCA1(1)     <---------ARR11(3)                                                         --------->RVE1(1) ---     --------->ARR11(3)          ---------->ID1        <---------YAB1    --------->REM1(2)      <----   tgtataagatatgtattaatttgatatagaaacttgtctcactcttctctgtgtattcttatttcagtgaggctgtgaagaaatatccgaatgagcaaat  18295200  Previous    Next  AGI:  At1g49430.1    Description:  LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2). similar to long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative [Arabidopsis thaliana] (TAIR:AT4G11030.1); similar to long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase [Arabidopsis thaliana] (TAIR:AT4G23850.1); similar to long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative [Arabidopsis thaliana] (TAIR:AT1G64400.1); similar to AMP-binding enzyme family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22526.1); similar to acyl CoA synthetase [Brassica napus] (GB:CAA96523.1); similar to hypothetical pr Range:  from: 18294711    to: 18299493    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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