Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  ------>MYB46(1)                                ------>MYB83                                --------->MYB52(1)                               --------->MYB55(1)                               ----------->HVH21                              <---------MYB59                              <---------MYB111(2)                              <---------MYB52(2)       --------->ANAC58       <---------MYB111(1)  --------->ZAT18             <---------MYB46(2)  <-------TEIL               --------->ANAC58 ------>DOF2                 <---------ANAC55(2) --ZmHOX2a(1)                --------->ANAC55(2) ---TOE2(3)                  --------->ANAC46 -->AGL15                    --------->ANAC55(1) ---AGL15          <---------KAN4(1)      <-----------GT1 ----AG--------->ANAC58      --------->ANAC58            --------->WOX13(1)             --------->ZAT6 ----AGL1<------ZmHOX2a(1) <---------ALFIN1     --------->YAB1               <-----------GT1 <-------   aaagtgcataaggaatagccaatattccaacacctaacacatatataccatcaaaatagcaatctattagtttttcttataacaaaactaatactaaggc  18280000          <---------YAB1        --------->YAB1       <---------ZAT6   <---------ANAC55(1)                                                                       --------   <---------YAB1                                              <<<<<<<GRF7                   <-------   <---------ANAC58                                 ----------->GT1                       <---------ANAC58   <---------ANAC58  ----------->GT1       ------->TEIL  <-----------GT1                  <---------ANAC46 <-----------GT1   <---------ZAT14        <---------CCA1(2)  ----------->HVH21--------->ALFIN1 --TOE2(3)--------->ICU4         ------->TEIL     ---------->DOF2---------->DOF2          <---------ANAC58   taattacgagtgataatcgactatagttatatatgaaactatatgtatcttagaaagttatacctgacaaagaattcaatgtgttgaaacaagcgtgaac  18280100                                  --------->HSFB2a(1)                                  <---------HSFB2a(1)                                  <---------HSFC1(2)                               <------NtERF2                              --------->LBD16                             --------->RAP2.3(2)                             --------->RAP2.6(2)                             --------->LBD16                            --------->RAP2.3(1)                            --------->ATERF1(1)                            <------NtERF2                            <---------LBD16                           ------>NtERF2                           <---------ATERF1(1)                          --------->DEAR3(1)                          <---------ATERF1(2)                          --------->ATERF1(2)                         --------->RAP2.3(1)   <---------GLK1(1)     --------->ATERF1(1)   --------->GLK1(1)    <---------ATERF1(1)  <---------ARR14(2) <-------GAMYB--------->HSFC1(2)  --------->ARR14(2)<---------MYB46(3)                                 ---------->DOF2 <------ZmHOX2a(1)<-----------HVH21                               --------->AHL20(2) ->REM1(2)       --------->DEAR3(1)                              --------->AHL20(2)       <------ZmHOX2a(1) --ZAT14   --------->YAB1<---------RAP2.6(2) *TSS         ----------->GT1               <---------TOE2(3)   agaggaaatgctaacatcaccgtcgttgccgccggaaaattccatcttaaatgttttgttttgttaaataaaaaaaagactagagtttttgaggaactta  18280200                   <------MYB83                  <---------AtMYB61               <-----------RAV1(1)           <---------ANAC46           <---------ANAC58                   <---------ARR14(2)                           <---------AHL20(2)           <---------ANAC58                  <-----------TBP        --------->LBD16        --------->AHL20(2)      <---------ICU4  <-----------HVH21     ------->TEIL          <---------LBD16      ----------->GT1   --------->ANAC46<------MYB46(1)      ------->TEIL       ----------->GT1         <-----------GT1   cttacacatcatgacttgtgttggtgtcagtgagagtgagtgtatgtatatatggaccaagtagataaaccggaaattggtttttgaaccggtttaaatg  18280300                                                                             ---------->DOF2                                                                            --------->AtMYB61                                                                           *TSS                                                                          ------>NtERF2             -                                                                    <------------CBF              <--                                                                   <---------GLK1(2)            <----                       ---------->ID1     <<<<<<<<<TBF1       --------->MYB52(1)                -----      <---------MYB52(1)     <-----------GT1                <---------ARR11(3)             <---------   tgaaacccgtttggatttttgttttgtttttttatctcatcttcttcttcagaaaaacacaagataacagaattgccaccaaagctccatttttatcccc  18280400         <---------ANAC58                                    >>>>>>>>>ARR2           <-----------GT1         <---------ANAC58                               <---------ARR14(2)         --------->GLK1(2)        <---------HSFC1(2)                              --------->ARR14(2)        --------->ARR11(3) -------->ANAC46                                <---------GLK1(2)     --------->ANAC46 -------ALFIN1                                --------->LBD16>>>>>>>>>ARR1        <---------GLK1(2) -----ALFIN1                                 --------->LBD16--------->ATHB12      <---------ARR14(2) ------>RAV1(1)    --------->YAB1            --------->HSFB2a(2)    --------->ZAT6--------->ARR14(2) --GT1  --------->HSFC1(2)--------->CCA1(2) <---------LBD16<---------YAB1       ----------->ARR10   acacagaagaagcttggggaatgagaagataagagctctcaaaattccccgaatttcgaatatgattgtaacactaaaccctaagattctccatttctcc  18280500                            <---------ARR11(1)                            <---------ARR14(2)                            --------->ARR14(2)                            ------->TEIL                   --------------------->WRI1              <---------HSFB2a(2)                                            --------->At4g35610              --------->HSFB2a(2)                                            <---------At4g35610        <----------DOF2    <---------CCA1(2)                          --------->ANAC58          -----        ------>ZmHOX2a(1)  <---------ARR14(1)           --------->YAB1--------->ANAC58    -----------   aaaatccatcctttttctcgaccttcttcgtatctctgtagaactcgaaatgtgtctctgataaccaattgcaagcttcagaagcctcaagatggtaatc  18280600                                                               <---------ANAC55(2)                                                               <---------ANAC46                                                              <---------LBD16                                                            --------->ARR14(2)                                                            ----------->HVH21                                                            <---------ARR14(2)                                                           <-----------HVH21                                                           <-------GAMYB                                                          <---------DEAR3(2)                                                          <---------MYB46(3)                                                       ------------>AtMYB77                                                       ------>NtERF2                                                       --------->ABI4(1)                                                      --------->DEAR3(1)                         ----                                                     --------->DEAR4(2)                        <-----                                                     --------->DEAR3(2)                        <-----                                                     --------->MYB46(3)                       <------                                                  --------->At4g35610                         -------                                                  <---------At4g35610                         -------                 --------->GLK1(1)     <---------DAG2--------->ORA47(2)     <---------DEAR3(1)<------ ---->YAB1       <---------GLK1(1)     <----------DOF2<---------ALFIN1  --------->DEAR3(2)<---------TOE2(3) >GT1      --------->MYB52(1)       <-----------GT1<---------ALFIN1 <------ZmHOX2a(1)     <---------TOE1(3)   agagaagtagtagtaacagaaatctcacgaagaccatttcactttccgattcagcaccgccggttacggaggagaccggcgatggaattgttaagggagg  18280700      --------->ALFIN1   <---------AtMYB61    --------->ANAC58   --------->ICU4       --------->ANAC58                       ---------->DOF2 ----->ALFIN1        <---------ARR14(2)                      --------->ANAC58 -MYB46(1)          <------ZmHOX2a(1)                   <-----------GT1 -MYB83          <------ZmHOX2a(1)                  <-----------ARR10                    <-----------GT1 ---DEAR3(1)   --------->ALFIN1         <---------TOE2(3)    --------->ANAC58         <---------ARR14(2) -->ALFIN1  --------->ALFIN1            <---------TOE1(3)  --------------->AGL15      --------->ARR14(2) -->MYB111(2) <------ZmHOX2a(1)    <------ZmHOX2a(1)--------->ARR11(3)            ---------->ID1 ---AtMYB61<------ZmHOX2a(1)    <------ZmHOX2a(1)   <---------ARR11(3)       <---------MYB52(1)   tggtaatggtggaggaggaggaggagacggaagaggaggattagggtttttgaagattttaccaagaaaggttttgtcagttttgtcgaatttgccactt  18280800                                                                             ---------->ID1       ---                        <---------At4g35610                                 <-------GAMYB----------->GT1                        --------->At4g35610       <---------TOE1(3)        --------->MYB52(2)     ---                 <---------ICU4                   <---------TOE2(3)        <-----------RAV1(1)   <---                 --------->ATHB12            <---------ZAT6                <---------MYB46(3)    ----                <---------YAB1           <--------P           <---------ARR14(2)      <---------ZAT6<   gctattacagaaatgttcaccattgctgctctcatggctcttggtaagtgttagggtttttgtagatttgaattggtttgttgcattagagttgagaaaa  18280900  Previous    Next  AGI:  At1g49370.1    Description:  pseudogene, similar to OSJNBa0072F16.8, blastp match of 42% identity and 6.6e-73 P-value to GP|21739229|emb|CAD40984.1||AL606460 OSJNBa0072F16.8 {Oryza sativa (japonica cultivar-group)} Range:  from: 18278718    to: 18280145    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g49380.1    Description:  cytochrome c biogenesis protein family. similar to hypothetical protein OsJ_012198 [Oryza sativa (japonica cultivar-group)] (GB:EAZ28715.1); similar to hypothetical protein OsI_013219 [Oryza sativa (indica cultivar-group)] (GB:EAY91986.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47670.1); contains InterPro domain ResB-like (InterPro:IPR007816) Range:  from: 18280375    to: 18283196    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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