Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               --------->ATERF1(1)                             <------NtERF2                            <---------RAP2.3(1)                            ------>NtERF2                            <---------ATERF1(1)                           <---------DEAR3(1)                           --------->RAP2.3(2)                           --------->DEAR3(1)                           --------->RAP2.3(3)                          --------->RAP2.3(1)                          --------->ATERF1(1)                          --------->RAP2.6(1)                          --------->RRTF1(1)                          --------->DEAR4(2)                          --------->ORA47(2)                          --------->ERF1 <-------GAMYB                         <---------ATERF1(1)                         <---------DEAR4(2)                         <---------ERF1  <---------ANAC58                         <---------RAP2.3(1)                         <---------ORA47(2)                         <---------RRTF1(1)                         <---------RAP2.6(1)                         ------>NtERF2   <---------ANAC58                        <---------DEAR3(1)                        <---------ATERF1(2)                        <---------DREB2C(2)                        <---------RAP2.3(2)                        <---------RAP2.3(3)                        <---------RAP2.6(2)                        <---------RRTF1(2)                        <---------RRTF1(3)                       --------->ATERF1(1)   <---------ANAC58                   --------->REM1(2) ------>ZmHOX2a(2)      >>>>>>>>>>>>>>>>>LFY<------NtERF2 <---------MYB46(3)                            <------ZmHOX2a(1) ------>TEIL     <----------DOF2    <------ZmHOX2a(2)                            <---------ANAC46 ---->HVH21     <---------ANAC46   --------->ARR11(3)                            --------->ALFIN1 -ANAC58        <---------ANAC58   <---------ARR11(3)                          <---------MYB46(3) >ANAC55(2)     <---------ANAC58<------NtERF2<---------ANAC46                 <---------DEAR3(1) -ANAC58     <---------MYB52(1)------>NtERF2 <---------ANAC58                 <---------AtMYB61 -ANAC55(2)<-----------RAV1(1)--------->DEAR3(1)                              --------->ALFIN1   cgaatttgagccactgttgcttgtaggcggcgccagcgatcttggttgcgagtgagagctatggtccgaagtcttagaaggtggtggaggagtatgagac  18233500                                                                                                  <--                                                                                                -----                                                                                               ------                                                                                              -------                                                                                              <------NtERF2                                                                                             --------                                                                                            <--------                               <--------HAHB4                                               <--------                               --------->YAB1                                               <--------                               <---------ICU4                                               <--------                               --------->ATHB12                                            <---------LBD16                              --------->ICU4                                             ----------->HVH21                       --------->At4g35610                                               --------->ALFIN1                       <---------At4g35610                                             <-----------RAV1(1)                       --------->ZAT2                                                --------->ZAT14                    <---------At4g35610                                              <---------ZAT2                    --------->At4g35610                             >>>>>>>>>>>>>>>>>LFY <---------DEAR3(1)                    ------>NtERF2         ---------->ID1          ---------->ID1     --------->ZAT2                   <---------DEAR3(1)   <-----------RAV1(1)     --------->MYB52(2)   ----------->RAV1(2)                   --------->DEAR3(1) <----------DOF2           <---------MYB46(3)   --------->At4g35610                --------->DEAR3(1)   --------->TOE2(3)          <-----------RAV1(1)  <---------At4g35610           ------>ZmHOX2a(1)  <---------ATHB12  <---------YAB1<----------DOF2        <---------ZAT14   atgttcttgtttcctccatcgccgctgcttccatcattacctttgttgttctcattgttgtttcctttgttgccattgttgtcactctgctgtggcgggg  18233600                                                    --------->ALFIN1                    <---------ETT(1)                                                    <---------ANAC46                    <---------LBD16                                                  <---------MYB46(3)                   <---------LBD16       --------->ALFIN1                          <---------DEAR3(1)                <---------HSFB2a(1)      <------ZmHOX2a(1)                          --------->ALFIN1                  --------->HSFC1(2) -------ANAC46                                 <---------MYB46(3)                  --------->HSFB2a(1) ->NtERF2                                      --------->MYB55(2)        --------->MYB52(1)         - ----->HVH21                                  <---------DEAR3(1)       --------->MYB46(3)           < -->ATERF1(1)                                 --------->ALFIN1         <---------HSFC1(2)--------->LBD16 ->LBD16              <---------YAB1          <---------AtMYB61        --------->HSFC1(2)------>NtERF2 -ANAC46     --------->ALFIN1              <---------DEAR3(1)    <------ZmHOX2a(1) <---------HSFC1(2) -ANAC58  --------->ALFIN1             <-----------RAV1(2)----------->HVH21       <---------KAN4(2)<- -DEAR3(1)<---------AtMYB61          <-----------HVH21   --------->ATERF1(1)    <------ZmHOX2a(1)---- -ANAC58 <------ZmHOX2a(1)      <------ZmHOX2a(1)<---------AtMYB61     <---------HSFB2a(1)  ---------   acgttgaaggaggaggtggagattgtgattgtgaggatgagtcagacggtggtggtggagacgacgaggaagaaccatcggaggaattttccggcaaagg  18233700                                                                                         ============    ----------->GT1                                                           <---------ANAC58    ---   --------->ALFIN1                                                           <---------ANAC58 <-----   <---------AtMYB61                                                         --------->ATHB12  ======   <---------DEAR3(1)           <------ZmHOX2a(1)          <------ZmHOX2a(1)<---------YAB1  ========= -------->ALFIN1           --------->ALFIN1--------->At4g35610   <---------ARR11(3)      <------ZmHOX2a(1) ---------AtMYB61        <---------ANAC46  <---------At4g35610   --------->ARR11(3)--------->ETT(1) -----ZmHOX2a(1)        <---------TOE2(3) >>>>>>>GRF7    --------->ALFIN1 <---------ANAC58  <------ZmHOX2a(1) ----->ALFIN1      <---------MYB46(3)  <-----------HVH21<------ZmHOX2a(1) <---------ANAC58--------->ALFIN1 ->DOF2  <---------YAB1 <---------AtMYB61<-----------RAV1(2)  <------ZmHOX2a(1)<---------WOX13(1) <--   aggaggtggtgattcttgttgttgttgaggtggaggagctatgtcaggtgaagatggaggaggaggagatgttgtttcttgattgtcggaaggaggagga  18233800                                                           <---------DEAR3(1)                                                           <---------ANAC46                                                           <---------DREB2C(2)                                                          <---------ABI4(1)                                                          <------NtERF2                                                          <---------------------WRI1                                                        ----------->HVH21                                                        --------->ALFIN1                             ----------->TGA1         <---------At4g35610              <-------GAMYB  ----------->HVH21        --------->ZAT2             =====================================HOX2a_HOX2a<------NtERF2             ------>ZmHOX2a(2)--------->MYB52(1)      <---------ZAT2             <---------MYB46(3)                      --------->ARR14(2)               --------->ANAC58       <-------GAMYB         --------->ALFIN1        <---------ARR14(2)               --------->ANAC46      <---------MYB46(3)   <------MYB46(1)          <------ZmHOX2a(1)   <---------LBD16      <-------      --------->MYB52(2)   <------MYB83           --------->ALFIN1      --------->LBD16------>NtERF2    <---------ANAC46       <---------At4g35610 --------->ALFIN1        <---------ANAC46--------->LBD16 ===================HOX2a_HOX2a            <------ZmHOX2a(1) --------->At5g28300      --------->DEAR3(1) ------>ARR11(3)           --------->At4g35610<------ZmHOX2a(1)        <---------LBD16--------->ANAC58 -ZmHOX2a(1) ===============================HOX2a_HOX2a--------->ATERF1(1)          <---------ATERF1(1) ===================HOX2a_HOX2a      <------ZmHOX2a(1)--------->At4g35610--------->LBD16   --------->ICU4 ===================HOX2a_HOX2a <---------ANAC46 <------ZmHOX2a(1)    <---------LBD16--------->SPL7 -------ARR11(3)          <---------DEAR3(1)--------->ALFIN1<---------MYB46(3)     <---------ALFIN1   gatgttgtttgttgatcgttggaagagggaggtgacggaggagaaggaggaggaggagctggcggtgagttctccggggattgcccctccgccattatct  18233900                                      <---------MYB55(2)                                      --------->MYB46(3)                                     --------->ANAC58              --------->ANAC58        <---------MYB46(3)           --------->ANAC58              --------->ANAC46        --------->MYB55(2)           --------->ANAC46              --------->ANAC58        --------->ABI4(2)          <---------ALFIN1           <------ZmHOX2a(1)               -------       <---------AtMYB61      --------->ANAC46              <---------TOE1(2)                 -------      <---------MYB52(1)      --------->ANAC58             ------>ZmHOX2a(1) <---------AHL20(2)     --------->LBD16 --------->At4g35610------>MYB83       <---------HSFB2a(2)      <----------DOF2   <---------LBD16   <---------At4g35610------>MYB46(1)    --------->HSFB2a(2)   <-----------GT1 --ARR11(3) ------------>CBF  --------->ANAC58     ------>ZmHOX2a(1)<---------MYB52(2)        <------   ctctctccggtggtttcaatgtgagatgaaacaaggaacacccaactctgttcctgttctcctaggaacaaggaaccattttttttcttttctcaaaatc  18234000                                                                        --------->ARR11(3)                                     <---------------AGL15              <---------ARR11(3)     <-----                                     --------------->AGL15              --------->AHL20(1)    <------                                    <-----------------AGL2              <---------AHL20(1)    <------                                    <-----------------AGL3           --------->AHL20(2)      <-------                                    ----------------->AGL3         ----------->GT1           <-------     <---------TOE2(3)            <-----------GT1                ---------->DOF2             <------- -->GLK1(2)                     <XXXXXXXXXXXXXXXXXXXMIR158B --------->AtLEC2                 -------- -->ARR11(3)                    <XXXXXXXXXXXXXXXXXXXMIR158A --------->ANAC58            <---------KAN4(1) ---ARR11(3)             <----------DOF2    <---------LBD16 --------->ANAC58       ------->GAMYB    -   tatttttaagaaagttttcgaatatttcttttgttatttctatatttggggattatacagccaggcaaaaagaaaatattcacaacgacaatattccgtt  18234100      <---------GLK1(2)                                                                             -      <---------ARR11(3)                                                                           --      --------->ARR11(3)                                                                          ---    ----------->ARR10                                                               --------->MYB52(1) ----MYB52(1)                                                                   <xxxxxxxxxxxxxxxxxxxx -----HVH21                                       <-------GAMYB               xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -GAMYB                                          <---------ANAC46        ------>MYB83 xxxxxxxxxxxxxxx --ANAC55(2)                                  <----------DOF2            ------>MYB46(1)   --------->ZAT18 --ANAC58                                    <---------ANAC58          --------->AtMYB61   <---------ZAT18 --ANAC58<-----------GT1                     <---------ANAC58        --------->ARR14(3)    <---------ZAT14 ->ANAC55(2)           ----------->GT1 <---------AHL20(2)            --------->ARR11(3) <xxxxxxxxxxxx -------->ANAC46----------->GT1        --------->AHL20(2)            <---------ARR11(3) <xxxxxxxxxxxx   acaggctagattttctgtttgtaaaatgtaaatttgtttaaaaaattgctttcgttgagagttgaactcaagacctcccgcttactaaacgggtgctcta  18234200        --------->CCA1(2)      <---------At4g35610      <---------ZAT2      --------->ZAT2      --------->At4g35610    <xxxxxxxxxxxxxxxxsmallRNA(i)    <xxxxxxxxxxxxxxxxsmallRNA(s)                                                           --------->YAB1 ------>MYB46(1)                                                                     ----------->GT1 ------>MYB83                                                                       --------->ZAT6 ----------->RAV1(2)                       --------->YAB1                         ----------->RAV1(1) -------->MYB52(1)                         ---------->DOF2                --------->YAB1   <---------ICU4 ----->GAMYB                  <---------ANAC46  <------ZmHOX2a(2)      --------->WOX13(1) <---------YAB1 ------>MYB46(3)              <---------ANAC58 --------->ARR11(3)    <---------At4g35610  --------->ICU4 xsmallRNA(l2)                --------->ANAC55(2)               <------MYB83   --------->ANAC46 xxxxx>smallRNA(se3)          <---------ANAC58 <---------ARR11(3)    --------->At4g35610--------->YAB1 xxxxsmallRNA(se3)            <---------ANAC55(1)               <------MYB46(1)--------->ANAC58 xxxxsmallRNA(i)    *TSS  <----------DOF2 <---------ATHB12  <---------MYB46(3) --------->ANAC58   accaactgagctacgagagctatttgttctttgcgtgttcttcaataaagatcaagtactcgttgttggtcatcagtcatcactcaacagtaataataac  18234300                                                                                                 <---                                                                                                 <---                                                                                                <----                                                                                    --------->ARR11(3)                   ------->TEIL    --------->ARR11(3)               <---------TOE2(3)           <----            ------------>CBF       <---------ARR11(3)               <---------YAB1  <---------GLK1(2)          <---------ETT(2)        --------->CCA1(1)                --------->AHL20(2)      <---------At4g35610        <---------At4g35610   --------->AHL20(2)                   <---------AHL20(2)  <-----------GT1        <-------GAMYB         <---------AHL20(2)                   --------->YAB1   <---------ARR11(3) <---------ICU4  --------->YAB1   --------->RVE1(1)<---------YAB1<---------YAB1   ----------->ARR10   taataagttctgttgacaatgaaacttgagatttaaatatctctaagttaatgctgattacaaggctattaatattagaaaccctagattttccactgcc  18234400  Previous    Next  AGI:  At1g49270.1    Description:  protein kinase family protein. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G18810.1); similar to putative receptor protein kinase PERK1 [Glycine max] (GB:BAE46451.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) Range:  from: 18231002    to: 18233895    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g49280.1    Description:  pre-tRNA. tRNA-Thr (anticodon: AGT) Range:  from: 18234147    to: 18234220    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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