Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       --------->bZIP60(2)                     --------->ANAC46                     --------->ANAC58          --------->YAB1                     --------->O2             <---------ATHB12                              ---------              --------->At4g35610             <<<<<<<<<ARR2                                 <--------   <------ZmHOX2a(1) --------->ANAC58         <<<<<<<<<ARR1                       ------>MYB46(1) --------TOE1(1)    <---------LBD16         --------->WOX13(1)                    ------>MYB83   <--- --------TOE2(1)   <---------ALFIN1        --------->MYB46(3)                    --------->WOX13(1) ---ICU4<---------YAB1                <---------REM1(1)             <---------ALFIN1--------->YAB1 <- ->AHL20(2)   <---------At4g35610     ----------->GT1             ------>ZmHOX2a(1)<---------ATHB12--   tacgaggatgatgtttagcttccacggcacagaaaatgtgttgtaacaatcatatggacaatgccttcctgcacatccaataccaatcaaaaatttaaat  18223800                                                                           --------->MYB59                                                                           <---------TOE2(2)                                                                       --------->HSFB2a(2)     --------->ANAC58                                                  <---------HSFB2a(2)     --------->ANAC46                                              --------->GLK1(1)     --------->ANAC58                                              <---------GLK1(1)     --------->RAP2.6(2)                                          <---------ARR14(2)   --------->RAP2.6(3)                                            --------->ARR14(2) ----------->HVH21      <---------AHL20(2)                      --------->LBD16  --------->ICU4 >AHL20(2)     <--------P                                 <---------AHL20(2)<------MYB46(1) -AHL20(2)  <---------YAB1                                --------->AHL20(2)<------MYB83<---------At4g35610 --------GT1<---------TOE2(3)      --------->ANAC46      <---------ATHB12  <---------TOE1(2)--------- --------ANAC55(2)      --------->AHL20(2)      <---------YAB1<---------LBD16    <---------YAB1 ------->ANAC55(2)    --------->YAB1<---------MYB59    --------->WOX13(1) <--------P    --------->At4g35610   tacatgaccgcaatatggttgctaaaataaatacaatacctcactaaattctaatagcaattaatccggatttctagtaggttatgattctgctacatcg  18223900                                        <------------CBF      --------->KAN4(2)                                       --------->ATHB12      <---------KAN4(1)                                      --------->MYB46(3)     <---------HSFB2a(1)                                    <-----------GT1          --------->HSFB2a(1)               ------                              <---------ANAC46               --------->KAN4(1)           <---------AHL20(2)                              --------->ANAC55(2)            <---------HSFC1(2)         <---------AHL20(2)            <------------CBF  <---------ANAC55(2)            --------->HSFC1(2)         --------->AHL20(2) --------->AHL20(2)           <---------ANAC55(1)     ----------->GT1            ----------->GT1<---- <---------AHL20(2)           <---------ANAC58       --------->ALFIN1           <---------TOE2(3) >REM1(1) <------ZmHOX2a(1)   <---------ANAC58   ---------->DOF2 --------->TOE2(3)----------->GT1   gatttaaacagaggaattgatgcataactcttacgtgttaaccattgaaatcaaagtggtagaacattcttagcacaaaacaaaggttaaataaatgaag  18224000                                                                                           <------MYB46(1)                                                                                           <------MYB83                                                                                           ----------                                                                                         <--------P                                                                                 --------->ANAC58                                                                                 --------->ANAC58                         <------MYB83                                            --------->ANAC46                         <------MYB46(1)                                        <-------TEIL              <---------ICU4                                                   --------->ARR14(1)             <---------AHL20(2)                                                --------->CCA1(2)             <---------YAB1                                                   --------->ARR14(2)           --------->YAB1<---------ATERF1(1)                                  <---------ARR14(2)  <---------AHL20(2)    <---------DEAR3(1)                                    --------->ARR11(1)  --------->AHL20(2)<---------TOE1(3)                                         <---------GLK1(2)  <---------ICU4    <---------TOE2(3)                                      <---------HSFB2a(2) ->TEIL <----------DOF2<--------P  ------->TEIL      --------->YAB1        --------->HSFB2a(2)  ----- -----At4g35610    <-----------RAV1(2)         --------->YAB1          <----------DOF2  <-------GAMYB   ctaattttttcttttataatttcaggttggctccatgaatgtaatggaataaaaatcatactaaaacagaaaactttctagatacgctagggttggataa  18224100                                                                                          <---------ANAC58                                                                                          <---------ANAC58                                                                                         <---------TOE2(3)                                                                                       ----------->HVH21                                                              <---------ANAC46<---------ARR11(3)                                                              <---------ANAC58--------->ARR11(3)                             <---------GLK1(2)          <---------ARR11(3)    <---------ARR14(2)                          <---------ATHB12       --------->LBD16             --------->GLK1(1)                      ------------>CBF          --------->HSFB2a(2)          <---------GLK1(1)                     --------->TOE2(3)          <---------HSFB2a(2)       <---------ZAT6<-----------GT1 ->GT1<---------CCA1(2) --------->WOX13(1)     <---------LBD16<---------ANAC58--------->ARR14(2) ---->GLK1(2)        <-----------HVH21  <---------ALFIN1--------->ARR11(3)<XXXXXXXXXXXXXXXXXXXXMIR2112-5P   tctcgctcttatcttcttctcttcgtcaatcgattctcttctccactcttctggagaagctcttgcttataacatagtgatatctgcatttgacgttctc  18224200                                                         ------>MYB46(1)                                                         ------>MYB83                                                       ------->GAMYB                                                       --------->DEAR3(1)                                                       --------->MYB46(3)                                                       --------->DREB2C(2)                                                      <------NtERF2                                                      --------->DEAR3(2)                                                     <---------ATERF1(1)                                                    --------->DEAR3(1)                                                    <---------ALFIN1                                                 --------->ANAC58                                                 --------->ANAC58                                                 --------->ANAC46                                                 --------->ANAC55(1)                                                 --------->ANAC55(2)                                                 <---------ANAC55(2)                                                <-------TEIL   <-------GAMYB                                               --------->ARR14(1)                                               --------->CCA1(2)                                              --------->ARR14(2)            --------->LBD16                   --------->ARR11(1) <---------MYB46(3)            ------>NtERF2                     <---------ARR14(2)<--------P                  <--------           --------->ANAC46                 ----------->ARR10<---------TOE2(3)       <---------YAB1       <---------ANAC58                 <-----------------------TaNAC69(2)        <---------ARR11(3)       <---------ANAC58             <------ZmHOX2a(1)------>NtERF2           --------->TOE2(3)   ----   atgtcgaatgcttccgccaagaagaagagaaaactcgaggaaaccgtagatacgccaccgactagggttgatgacaaaaccctagttcttatttctgatt  18224300                                                                                         <---------ANAC46                                                                                         <---------ANAC58                                                                                         <---------ANAC58                                                                                   --------->DAG2                                                                                  ---------->DOF2                           --------->MYB52(1)    <---------At4g35610           --------->LBD16                           ------>MYB46(1)       --------->At4g35610          --------->HSFB2a(2)                         <---------MYB59        <---------MYB46(3)            <---------HSFB2a(2)                         <---------MYB46(2)    <--------P   --------->ANAC58 <---------LBD16                   <---------ZAT6             <-------GAMYB --------->ANAC58<------ZmHOX2a(2)     ----------------->AGL2------>MYB83       <---------ANAC58             --------->ARR14(2) -YAB1         --------->ARR14(2)             <---------ANAC58   --------->O2------>ZmHOX2a(2) ------->GT1   <---------ARR14(2)  ----------->GT1      >>>>>>>>>TBF1      <---------ARR14(2)       <   cgaaaaaacccaaatcagatagggttaccaaactgaagagcaaaattgggttgctgaagaagaagccaagtgatttcgatccggaaaagtgtcttgttgg  18224400                                                          ---------->DOF2                                                        ----------->HVH21                                                      <---------ZAT2                                                      <---------At4g35610                                               --------->ATHB12                <---------ANAC58              <---------YAB1                <---------ANAC46             ------>ZmHOX2a(2)--------->ALFIN1                <---------ANAC58             ==============================HOX2a_HOX2a            <---------GLK1(1)    ------>ZmHOX2a(1)    --------->At4g35610            --------->GLK1(1)    ===================HOX2a_HOX2a                     <---------GLK1(2) --------->CCA1(2)              --------->TOE2(3)<---------WOX13(1)              --------->YAB1 --------->MYB52(1)   <---------YAB1        <---------At4g35610      --------->ARR14(2) <---------ANAC46 ---------ARR14(2)<---------MYB52(1)  <----------DOF2 --------->ZAT2<------ZmHOX2a(1)--------->GLK1(2)   gagaaacgggagagagttccgtttatgtttctctccttagcttttgatctgattgcagctgaaagtggcaggattgtcatcactcatattctgtgtaaca  18224500                                         ------>MYB46(1)                                         ------>MYB83                                    --------->AHL20(1)                         ------>ZmHOX2a(1)                                               <---------AHL20(2)                       ----------->RAV1(2)                                               <---------AHL20(1)                   <---------ALFIN1    <---------MYB59                            <---------TOE2(3)           <---------DOF5.7(2)         <---------MYB111(1)                <---------ZAT2 --------->AHL20(2)         <---------MYB52(1)            <---------MYB46(2)               ------->PIF5    --------->AHL20(2)         --------->DOF5.7(2) --------->ATHB12   --------->ARR11(3)      <-------PIF5<---------ARR11(3)    ------------>MYB.PH3(1) <---------YAB1     <---------CCA1(2)       ----------->RAV1(2)   tgttgagaaccgttatcgccactactcctgatgatttgctacctactgtttatcttgctgcaaatgagattgcccctgctcatgaaggtattaaattggg  18224600                                                                                 --------->ZAT2                                                                                 <---------ZAT2                                                                             <---------ANAC55(2)                                                                  --------->At4g35610                                                                  <---------At4g35610                                                             ------->MYC3    --------->ANAC58                                                             <-------MYC3    --------->ANAC46                                                            <---------O2     --------->ANAC58                       <---------TOE2(3)                    --------->O2     --------->ANAC55(2)                    <---------YAB1                         <---------TOE1(2) --------->ANAC55(1) <---                 --------->ICU4                           <---------ALFIN1 --------->CCA1(2)     <---                --------->TOE2(3)               <---------AGP1 --------->WRKY38(1)        <---------O2               --------->REM1(1)       <----------DOF2 --------->PCF2     <---------ARR14(2)     <---             ------>ZmHOX2a(1)     XXXXXXXXXXXXXXXXXXXX>MIR395A/D/E       --------->ARR14(2)---------   aatgggtaagggttcctacattattaaggcaatctctgaagcttttggtagaactgagtcccacgttgagcagcaatatacgcaactgggagacttgggg  18224700  Previous    Next  AGI:  At1g49250.1    Description:  ATP dependent DNA ligase family protein. similar to ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1), ATP binding / DNA ligase (ATP) [Arabidopsis thaliana] (TAIR:AT1G08130.1); similar to hypothetical protein OsI_032964 [Oryza sativa (indica cultivar-group)] (GB:EAY79005.1); similar to putative DNA ligase [Trifolium pratense] (GB:BAE71211.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16749.1); contains InterPro domain ATP-dependent DNA ligase, conserved site (InterPro:IPR016059); contains InterPro domain ATP dependent DNA ligase, C-terminal; (InterPro:IPR012309); contains InterPro domain DNA ligase, N-terminal; (InterPro:IPR012308); Range:  from: 18224201    to: 18227924    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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