Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    --------->YAB1                                                                                 <---------AHL20(2)                                                              <---------------AGL15                                                              --------------->AGL15         ---------                                                             ----------------->AGL2        ----------                                     --------->MYB52(1)     <---------ARR11(3)   <---------YAB1                        <-----------HVH21               <---------ICU4        --------->AHL20(1)   ttagacacatatgtgatatatcactgggtcagaactatctaccgaaactcggttttcatcaagaccataagtagaaaacatatattataagccctaacag  18212500                                                <---------TOE2(3)                    --------->CCA1(2)          <---------AHL20(2)                    <---------GLK1(1)          --------->AHL20(2)                           ---------                    --------->GLK1(1)          --------->YAB1                               <--------       --------->ANAC46                    <---------RVE1(1)                                <--------       --------->ANAC58             <-----------RAV1(2)                                   <---------RAP2.3(3)       --------->ANAC58 ----------->GT1   <---------ARR11(3)                   ---------->DOF2 >MYB52(1)         --------->ARR11(3)     --------->ARR11(3)              --------->CCA1(2)<---------ATERF1(1) ->HVH21           <---------ARR11(3)  <------ZmHOX2a(1)             ---------->DOF2<-------TEIL ----   gctaatatcaaggaacagtgagatatcagtaaaatgagccaggagatattaatatttgaatgctgctatatcaaagatagggaaagttcatggctgctcc  18212600                                     <---------ARR14(2)                                     --------->ARR14(2)                 <---------YAB1                               --------->HSFB2a(2)              --------->ANAC46                               <---------HSFB2a(2)             <-------MYC3                              <---------LBD16                  ------->MYC3                            --------->GLK1(2)                 <---------TGA1a                       --------->ANAC58                       --------->TGA1a                       --------->ANAC58                       --------->O2                       --------->ANAC46  --------->ATHB12     <---------O2   ---------->DOF2   ---------->DOF2 --------->ARR11(3)       <---------PIF3(3)                 ----- >At4g35610        <---------HSFB2a(2)  <---------YAB1        --------->PIF3(3)                 ----- -ZAT2             --------->HSFB2a(2)--------->CCA1(2)     ----------->RAV1(1)              <------- -At4g35610   <---------PCF2<---------ARR14(2)        ----------->RAV1(1)                 <---------YAB1 ------->GT1  --------->TCP15(1)     <---------ARR11(3) --------->MYB46(3)      <---------At4g35610   agttaaaaagctcatgggtccctagaagcaattctgggagatatgatttgctaaggccacagccacatggcactactattgcagcaactggtatgatgga  18212700                                          --------->AHL20(2)                                          <---------AHL20(2)                                         --------->AHL20(2)                           <---------YAB1   <---------AHL20(2)                <---------AHL20(2)                              <----------DOF2  --------->AHL20(2)    --------->At4g35610                                         ------>ZmHOX2a(2) ---->PCF2              <---------At4g35610                       <-------TEIL    <---------ARR11(3) -->TEIL             <-----------GT1--------->AHL20(2)      ---------->DOF2       --------->ARR11(3) --WOX13(1) ---------->DOF2     <---------ATHB12      ---------->DOF2        --------->At4g35610<----   cccattttatataacaaagcatattacgctgcaaatgattttataaaattagacactaaaggtaaaggtccataatgtgagcttgatctttatagcttct  18212800                                                                     <------------CBF                                                                   --------->AHL20(2)         --------->TOE2(3)                                         --------->AHL20(1)         --------->YAB1                                  --------->ARR11(3)        <---------ATHB12                --------->AHL20(2)         <---------AHL20(2)        --------->MYB46(3)        ----------->TBP        <---------ARR11(3)        <----------DOF2       ------>MYB83               <---------AHL20(2)    --------->CCA1(1)         <---------DAG2       -------->P              <---------AHL20(1)       --------->RVE1(1)      <-----------GT1   ----       ------>MYB46(1)         --------->AHL20(1)    <---------AHL20(2)      <----------DOF2  <------    --------->MYB46(3)        --------->AHL20(2)    --------->AHL20(2)       <---------DAG2 --------- -----YAB1                --------->AHL20(2)    ------>ZmHOX2a(1) --------->AHL20(2)    ------>ZmHOX2a(1)   tattcatccaaccataagtttttctaaatgaaatatataaaaaaaaattcctcattaaatatctgaaaaaaaattgaaactttacctttcctctatataa  18212900                                                                   --------->TOE2(3)                                         ------->GAMYB        <---------ATHB12                             *TSS       --------->ANAC58     ------>MYB83                            <-----------GT1                 --------->WOX13(1)          --------->ZAT18                            --------->ANAC46               --------->AtMYB61            <---------ZAT14                          <---------AHL20(2)         --------->ANAC58                   <---------ZAT18                        ----------->TBP --------->ANAC58 ------>NtERF2                  --------->ZAT14                   --------->ZAT6     --------->MYB52(1)--------->RAP2.6(2)           <-------MYC3 -------->CBF  <----------DOF2    ------->GAMYB      --------->ANAC58                 ------->MYC3 ---AHL20(2)  --------->TOE2(3)  --------->MYB46(3)---------->DOF2 --------->YAB1  --------->YAB1 -->TBP       --------->TOE1(3) -------->P --------->ARR14(2)------>MYB46(1)      <---------YAB1   acaattagcctccaaacctttactctatataaacaacctccaacggaaacacagaaagccaccaatctatcttaaaactaagttatcatgtgcactacca  18213000                                        --------->ANAC46                                        --------->ANAC58                                   <----------DOF2                                 <------ZmHOX2a(2)                                --------->ARR11(3)                                <---------ARR11(3)                                --------->AGP1                                                     --                               --------->GLK1(1)                                                -----                              ----------->ARR10        <---------ARR11(3)                      <-----                          ------>MYB46(1) <---------ARR11(3)            <-----------GT1        ------                          ------>MYB83  --------->ANAC58         --------->ANAC58            --------                         --------->MYB52(1)  --------->GLK1(2)   --------->ANAC58       --------->ICU4                   ---------->DOF2------>ZmHOX2a(2)    --------->ARR11(3) <---------YAB1<---------ATHB12   tttccatttccatttccaccataaaaccaactgagatctttcaagaaattcttggaagttcttactcaagaaaattactatttcatacccatgatcaatc  18213100 ------>MYB46(1) ------>MYB83   --------->LBD16                                                <---------ZAT14 -------->P  ------>MYB83                                                      <---------ZAT18 ------->MYB46(3)         <---------------------WRI1                           --------->ZAT18 ---->YAB1 <---------ALFIN1                                            ------>ZmHOX2a(1)   <---------ZAT18 ----ATHB12--------->DEAR3(1)                                        <---------ZAT18     <---------At4g35610 --->MYB46(3)------>MYB46(1)              --------->AtLEC2      <---------ATHB12         --------->At4g35610 ->WOX13(1)--------->AtMYB61         <----------DOF2          ------>ZmHOX2a(1)--------->ZAT14   accaactccagcaccatccccatatgtaggcgataacaactttgatgcaaatgttgttatggtcctatcagtcctcttatgtgcacttgtttgctcactt  18213200                                                                                         <---------ALFIN1                                                              ----------->HVH21         ------>MYB83                                                            ----------->GT1             ------>MYB46(1)                       <----------DOF2                      <---------MYB46(3)         ==============                       <---------ANAC46                    --------->ALFIN1            ----------->RAV1(1)                       <---------ANAC58                 --------->ALFIN1           <---------WRKY18(1)                       <---------ANAC58               <---------At4g35610         ----------->HVH21                     ------->TEIL                     <---------ZAT2            <---------ANAC58           --------->YAB1                         ----------->HVH21             <---------ANAC58          <---------YAB1    <---------At4g35610 ----------->RAV1(2)       ------>ZmHOX2a(1)<---------        --------------->AGL15              <-----------GT1 <---------AtMYB61 <---------ZAT18  <------ZmHOX2a(1)        <---------------AGL15 --------->ALFIN1  --------->At4g35610 <---------MYB52(2)--------->AtMYB61   ggactcaattctataataagatgtgccttgaggtgctccaatttagtaccatctgaagctggtggtgacaactatcctgttcgcttgaccaacacaggag  18213300                                                                ----------->ARR10                                                        <---------AtLEC2                                            --------->ZAT14  <---------ANAC58     ---------->DOF2                   <---------ZAT14  ----------->RAV1(2)<---------ZAT14  --------->ANAC58                   --------->ZAT6<---------ARR14(2)      <---------ZAT18  --------->ANAC58                 <-----------GT1 --------->ARR14(2)      --------->ZAT18 ==RAV                 <---------HSFB2a(2)  <---------ZAT14  <---------ANAC58                       < --RAV1(2)             --------->HSFB2a(2)--------->ANAC46   <---------ANAC46            <---------LBD16   tcaaacgaaaagccttgaagagtttccagacagtaagttactctactgaactaaatctgcctggcttagataccgagtgtgctatctgtctctcggaatt  18213400  Previous    Next  AGI:  At1g49230.1    Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to RING-H2 finger protein ATL1L (ATL1L) [Arabidopsis Thaliana] (GB:Q6NQG7;GB:Q9M9C1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G49200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46480.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 18212929    to: 18213796    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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