Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              --------->MYB52(1)           ----------->HVH21         --------->O2         <---------TGA1a         <---------bZIP60(1)         --------->TGA1a                           <------MYB83         <---------bZIP60(2)                       ----------->GT1         --------->bZIP60(1)                       <------MYB46(1)         --------->ANAC58                       <---------MYB52(1)               <-------GAMYB         --------->ANAC58                      --------->LBD16                  <---------MYB46(3)         <---------ANAC55(2)                  <---------HSFB2a(2)               --------->MYB55(2)         --------->ANAC55(2)                  --------->HSFB2a(2)               --------->MYB111(2)         <---------O2         --------->LBD16----------------->AGL1            --------->ALFIN1     -      ----------->TGA1        ----------->GT1<---------LBD16                   <---------AtMYB61    <      ----------->HVH21     <---------LBD16 --------->MYB52(1)              --------->ALFIN1    <---- ------>ETT(1)<---------DEAR3(1)            <---------At5g28300    <------ZmHOX2a(1)  ------->TEIL  <   tcggaatggtgacgcgacggtggaattaagaccggagaaattaagttaccggaaggtgaatcggagagaggagaagaagaggtggttgcatctactggac  18121100                                              --------->ATHB12                                         ------>NtERF2                                         <---------RAP2.3(1)                                         <---------ERF1                                         <---------DEAR4(2)                                         <---------DEAR3(2)                                        --                                        <---------RAP2.6(2)                                      ----                                      <---------RAP2.3(1)                                        ----                            <---------YAB1--------->ATERF1(1)                                  <-----                          <---------ICU4<---------RAP2.3(2)                                 ---------                          -------->HAHB4<---------DEAR3(1)                                  ---------                         <---------ATHB12<---------ATERF1(1)                                <--------                 --------->MYB52(2)   <---------ATERF1(1)                             --------->LBD16              <------MYB46(1)     --------->HSFB2a(2)                                --------->ANAC58              <------MYB83--------->YAB1<---------RAP2.3(3)                         --------->MYB46(3)             <---------AtMYB61    <---------HSFB2a(2)                --------->MYB52(1)    <--------- <---------WOX13(1)      --------->ICU4<------NtERF2             ------>MYB83     <---------ARR14(2) -------->ARR14(2)       <---------YAB1--------->ATERF1(1)       ------>MYB46(1)  --------->ARR14(2) ---------ARR14(2)<-------GAMYB  <---------LBD16<---------WOX13(1)  ----------->HVH21--------->ANAC58 -----LBD16  --------->MYB59--------->ICU4<------NtERF2          -------->P <----------DOF2<---------ARR11(3) ---------GLK1(2)<---------MYB46(3)  <---------DEAR3(1)        <---------MYB59   <------ZmHOX2a(1)---   cggattggcttcgatttggtcgttgtaatgatgattctggaggcggctcgattgatgtgaagaaacctactcgacggactttaggaaccgcaagagctcc  18121200      --------->GLK1(2)                       =========================HOX2a_HOX2a      <---------ARR14(2)                --------->YAB1      --------->ARR14(2)               --------->ICU4 <---------ANAC46                    --------->YAB1                                                -- ---->NtERF2                        <---------YAB1                                           -------- ----->LBD16                        --------->ICU4  <---------TOE1(3)                        <------- -->NtERF2                  ------>NtERF2   --------->ARR11(3)                              --------- ----LBD16                 --------->DEAR3(1) ------>ZmHOX2a(2)                             <-------- >GLK1(1)                ------>NtERF2 <---------YAB1                           --------->WRKY38(1)<- >At4g35610             --------->DEAR3(1)  <---------ARR11(3)                 <---------WOX13(1)---- -GLK1(1)             <---------ATERF1(1) <---------YAB1                     <------ZmHOX2a(1)<------NtERF2 --ARR10            --------->SPL7--------->YAB1    <---------TOE2(3)  <-------TEIL    --------->MYB52(1) -------->HVH21   <---------SPL7 --------->ICU4<----------DOF2  <------ZmHOX2a(1)<---------WRKY18(1)-   gcgacgagtatccattgagcgggacgacgacgacgatgatgatgatgatcttttagggttttattaggagagattcaaaggattgaccaaaacggtgggg  18121300                                           <---------YAB1                                         --------->YAB1              ----------->HVH21                                        <---------YAB1             <---------ANAC55(2)                                      <---------ICU4               --------->ANAC55(2)                                      <--------HAHB4               <---------O2                                     --------->ICU4                <---------ANAC58                                     <---------YAB1                <---------ANAC58                                   <--------HAHB4                <-----------GT1                                   <---------ICU4             --------->YAB1 ------->ARR14(2)                  --------->YAB1           --------->AHL20(2) ->MYB55(2)                       <---------ATHB12        <---------RVE1(1) --MYB46(3)                       --------->ICU4         --------->ARR11(3) >ALFIN1                          <---------YAB1         <---------GLK1(2) -ANAC46    <---------ANAC46 --------->ANAC58            <---------ARR11(3)              ---------->DOF2 --------ARR14(2)            --------->ANAC46          <---------TOE2(3)    --------->DAG2 ------->ARR10               --------->ANAC58 ----------->GT1<---------YAB1---------->DOF2      ----- -------->CCA1(2)            --------->ANAC55(2) --------->AHL20(2)----------->GT1  <-----------GT1   agatttgctaaatggcctaaaccttgttttcaagtaatcattattatgagataaaataagatttttataacgtgacaaaaagtatttaacccaaagaaat  18121400                                       --------->AHL20(2)                            ---------->DOF2                                  <---------YAB1   <---------YAB1                   <---------AHL20(2)                                --------->YAB1     <---------AHL20(2)           --------------->AGL15      <------ZmHOX2a(2)    <----------DOF2  --------->YAB1                      <---------------AGL15 ---->AtLEC2 <---------TOE2(3) <---------YAB1     --------->YAB1        <----------DOF2        ------   gcaaatcgatcatttaagttttatgtaaactttattataaaaaaaataagaatattaatgtctgaacaaattttctttagtactattaaaagcgattttg  18121500                         --------->ANAC58                         --------->ANAC58                     ---------->DOF2  --------->ANAC46               ------------>CBF                  --------->YAB1    --------->ANAC46     <---------ALFIN1             ----------->GT1 --------->ANAC58            --------->ANAC46 *TSS       <---------TOE2(3)--------->ANAC58            --------->ANAC58                      <----- ----->GT1---------->DOF2--------->ANAC46                --------->ANAC58          --------->ANAC46   aaaaaaaaaaaaaaaaggtttcataaaacgcaagaaaaacacaacatactcaaacacacacacatctaaatgccaattcaaatacacaaaatacacttgt  18121600                                                                              --------->ANAC55(2)                                                                              --------->ANAC55(1)                                                                              --------->ANAC58                                                                              --------->ANAC46      <---------ARR11(3)                                              --------->ANAC58      --------->AHL20(1)                                              --------->ANAC58      <---------AHL20(1)                    <----------ID1           <---------ZAT18   --------->YAB1                         <---------------AtSPL8     --------->ZAT18 *TSS ------------>CBF                        ---------->DOF2--------->ANAC58      --------->ANAC58 ------HVH21                         ----------->GT1    --------->ANAC58      --------->YAB1       --   cacaacaatattttcaaaaacaaaatagggaacagaaggtcgtaaaagtacaaaacacaagacaaactaagcacgctcaaacgtaattcatacataaaaa  18121700                                                                                                  ---                                                                                                  <--                                                                                      <------ZmHOX2a(2)                                                                                    <------ZmHOX2a(1)                                                                                 --------->DAG2   ---            --------->ANAC46  --------->ANAC46       --------->ANAC46           ---------->DOF2   <--            --------->ANAC58  --------->ANAC58       --------->ZAT6        --------->YAB1        <---            --------->ANAC58  --------->ANAC58     <-----------GT1  --------->At4g35610    <---------ZAT14 ------->AHL20(2)   --------->ANAC46   ---------->DOF2              <---------At4g35610    --------->ZAT14   aaaaaataacacacacacaaacacacatctaaacgcaaattcaaagacacaattcacactacaatacatcagcacaatcacaaaaaggatcacttcacaa  18121800           --------->AtLEC2    --------->ANAC55(2)  --------->AHL20(2)                                                                        --------- ------>ATHB12                                                                              <-------- -------ICU4                        <---------MYB52(1)     ------->TEIL                --------->YAB1 ------>YAB1             <----------DOF2        <---------AHL20(2)                     <---------ICU4 ------HAHB4          <---------AHL20(2)       <---------AHL20(2)                     <---------ATHB12 ------ATHB12         <-----------GT1          --------->AHL20(2)    <-----------GT1  --------->ICU4   tcatttacatatcatgccaagaatttactttcgaactcgttgttttctattaattttgaagcacctatatttatctactcattttgcaataatcagctgt  18121900                   --------->ANAC55(2)                     --------->YAB1      <---------YAB1                                       <---------ICU4--------->MYB52(1)  <------- >At4g35610     --------->ARR14(2)              <----------DOF2        --------->MYB46(3) ---------->DOF2 -At4g35610     <---------ARR14(2)              <---------DAG2  <---------YAB1 ---------->DOF2     --   tttgaattctaattccagtatatgtaacatactaacatcgactgtttcaactttttgttattcattatgttcaactactggcaaagacaaattcaagcag  18122000  Previous    Next  AGI:  At1g48970.1    Description:  GTP binding / translation initiation factor. similar to eukaryotic translation initiation factor 2B family protein / eIF-2B family protein [Arabidopsis thaliana] (TAIR:AT5G38640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49282.1); contains InterPro domain Initiation factor 2B related; (InterPro:IPR000649) Range:  from: 18117382    to: 18121501    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g48980.1    Description:  similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT2G17970.1); similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT2G17970.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO48224.1); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123) Range:  from: 18121685    to: 18124315    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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