Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                              <---------HSFB2a(2)                                                  --                              --------->HSFB2a(2)                                                  <-                              --------->HSFC1(1)                                                   --                              <---------HSFC1(1)                     <---------TOE1(3)          -----                          --------->KAN4(2)                          <---------TOE2(3)          <----                         <---------KAN4(1)                        <----------DOF2               -----    <---------AHL20(2)   --------->KAN4(1)                       <---------ANAC58               <----    --------->AHL20(2)  <---------KAN4(2)                   <-----------RAV1(1)                ------ -------DOF2           <------------CBF                 <----------DOF2                <---------ZAT6 >ZmHOX2a(1)  --------->GLK1(1)                   <-----------GT1<---------ANAC58      <---------ANAC46   ttttgtttaatttctgatatcgagggattgttctcgaagaaaatgtttagtttttctgctttgtggtgcttaaggtttgaatttaagtagtgtgagagtg  18110200          <-----------GT1       ----------->GT1       <---------MYB46(3)       --------->MYB52(2)   <------MYB46(1)   <------MYB83                 --------->ANAC46 --------ZAT2                  <---------ZAT18 ------->At4g35610             --------->ZAT18 --------At4g35610        <---------ANAC46                <------------CBF ------->ZAT2             <---------AtLEC2              --------->ARR11(3) ---->ZAT14               <---------ANAC58              <---------ARR11(3) -----ZAT14               <---------ANAC58     --------->ARR11(3)                  <----------DOF2 ---->ZAT18           <----------DOF2          <---------ARR11(3)                  <XXXXXXXXXXXXXXXXX -----ZAT18          <---------ANAC58         --------->GLK1(1)          <---------AHL20(2) --->ALFIN1          <---------ANAC58         <---------GLK1(1)         <---------YAB1   cagctaggtttgttactagtttggctttgcttgtccacaacttgagggatatctaatagatattgttttgacttattatttgctactttgaaatttgaat  18110300                                                                                          --------->AHL20(1)                                                                                          --------->AHL20(2)                                                                                          <---------AHL20(2)                                                                                   --------->TOE2(3)                                                               <---------ICU4      ----------->GT1                                --------->ARR11(3)          <---------AHL20(2)    ----------->GT1                                --------->GLK1(2)          --------->AHL20(2)  --------->DAG2                                <---------ARR11(3)         <---------AHL20(2) ---------->DOF2                                --------->ARR14(2)    <---------ANAC46     --------->YAB1<---------AHL20(2)                            <------ZmHOX2a(1)         <---------ANAC58    <---------YAB1 --------->AHL20(2)       ---------->DOF2    <---------TOE2(3)           <---------ANAC58   <---------ARR11(3) XXXMIR829.2--------->CCA1(2)   <---------ARR14(2)   ---------->ID1      --------->ARR11(3)      <---   ttttgttttcaaagaaatacgactagttgaggaaaatctgtttttgtgagtatttttcgtattaattttgactaatatcataaagcgttaaataatttga  18110400                                                                                     ----------->GT1-                                                                                ------>ZmHOX2a(2)   <                                              <---------ANAC58                 <------ZmHOX2a(2)    -                             --------->ANAC55(2)    <-------TEIL              --------->ARR11(3)    <   <------------------------ANAC81       --------->ATHB12                     <---------ARR11(3) ----  <---------AHL20(2)       <-----------GT1    <---------ANAC58           --------->DAG2        >>>>>> ------YAB1        <---------GLK1(2)    --------->ICU4--------->TOE1(2) ---------->DOF2      --------   tgatttttttttgtgtttttggattctttttacatatttgaaatgtttgggtgatacatgggatgaagtgagaataaagggatctattcgtaaaatagat  18110500                                                                    <---------ANAC46                                                                    <---------ANAC58                                                                    <---------ANAC58 ------>NtERF2                                                            --------->LBD16         --------->DEAR3(1)                                                         ------>ZmHOX2a(2)          --------->ANAC46                                                       <---------ARR14(2)           --------->DREB2C(2)                                                       --------->ARR14(3)          --------->MYB46(3)                                                       <---------ARR14(3)         <---------At5g28300                                                       --------->ARR11(3)         <---------ATERF1(1)                                                       --------->ARR14(2)        <---------ALFIN1                                                       <---------ARR11(3)       ----------->HVH21                                       =========================HOX2a_HOX2a    <-----------HVH21 -------->ARR11(3)           --------->ICU4        --------->At4g35610         <-----------TGA1 ---------ARR11(3)        --------->AHL20(2)       <---------At4g35610        <---------bZIP60(1) -------->AHL20(1)    --------->LBD16  ========================HOX2a_HOX2a    <---------ANAC58 ---------AHL20(1)   --------->ANAC55(2)      --------->ANAC46   *TSS         --------->bZIP60(1) ----->AHL20(2)     <---------LBD16    <------ZmHOX2a(1)<------ZmHOX2a(2)     <---------ANAC58 ------ >>>GATA-1      <---------ARR14(2)    --------->ZAT18 <---------GLK1(1)       --------->ANAC55(2) <-- --->GT1        --------->ARR14(2)    <----------ID1  --------->At4g35610     <---------ANAC55(2) ---   aaaatattcgagacttccgatttgcggaataaatatgaagaggactaaacgacagcagatcccgtcgttttcgtgttgttccgtcaccgccatctaaaca  18110600                    <---------ANAC46                   ------>NtERF2                   <------NtERF2                  --------->LBD16                  ------>NtERF2                 <---------DEAR3(1)                 <------NtERF2                --------->LBD16                <---------LBD16                ------>NtERF2                --------->At4g35610             <---------At4g35610             --------->At4g35610             <---------ZAT2        ----------->RAV1(2)        <---------At4g35610        --------->At4g35610           <---------ARR14(2)                           ---------->DOF2      <---------ALFIN1                --------->ARR14(2)                  --------->ANAC58    <-----------HVH21                 <---------ARR11(1)                  --------->ANAC58    ------>ZmHOX2a(1)                 --------->GLK1(2)                 <------ZmHOX2a(1) --->ANAC46  --------->ZAT2  --------->ALFIN1      <---------TOE2(3)   <----------ID1      --------->STY1(2) -------ALFIN1--------->ATERF1(1)     ------->TEIL <---------TOE1(3) <------ZmHOX2a(1)     <---------STY1(2) ------>AtMYB61--------->DEAR3(1)    <---------ARR14(1)        <---------YAB1   --------->YAB1    <--   ccactccttcacctgagccgcggcgaagaaggtggaagcgaatctattagattagggtttatacgattataggaggacgaaatcagaaagacgagctaga  18110700              --------->HSFB2a(2)              <---------HSFC1(1)              <---------HSFB2a(2)              --------->HSFC1(1)             <---------LBD16  --------->TOE1(2) <---------At4g35610 --------->HSFB2a(1) <---------HSFB2a(1)                                         <---------ATHB12 --------->ZAT2                                            ------>MYB46(1)                     ------ <---------ZAT2                                            ------>MYB83                  <---------ARR11(3) --------->HSFC1(2)                                      --------->AtMYB61              <---------GLK1(1) --------->At4g35610                                     <---------MYB111(1)   --------->ANAC46<----- <---------HSFC1(2)                    <-------TEIL--------->GLK1(2)         <-----------GT1   <----- ----ZmHOX2a(1)      --------->CCA1(2)--------->CCA1(2) --------->ANAC46   <----------DOF2     ------   ggaagctgcgatttttctggaagataaacaatggcacaagattcagagaagagattccaccaaatcatggataaactctttaccccatcgaaatctcagc  18110800                                              --------->ZAT6        ------>ZmHOX2a(1)      <---------ANAC58 --->ZAT2                      <---------ANAC58                --------->At4g35610 ----At4g35610  <-----------HVH21<---------MYB46(3)            <---------At4g35610           -------- ----ZAT2 <---------ALFIN1     <---------ANAC46      <---------AtLEC2<---------MYB52(1)   <---------At4g35610 --->At4g35610 --------->bZIP60(2)          <-----------GT1 <-------TEIL     --------->GLK1(1) <-----   ttccttcttcctccaccaggtcagtctcttcttgctggttactgttttacactgtgcatcgattcatctccattatctgagttccattgtttcgctgatt  18110900                                                                                  <-------GAMYB                                                                                 --------->MYB52(2)                                                                                 <---------MYB46(3)                                                                      <---------GLK1(1)    ----------->GT1                                         <----------DOF2    <---------MYB52(1) --------->ALFIN1                                         <----------DOF2  <---------At4g35610 ->ATHB12     <---------ANAC58                      >>>>>>>>>EIN3   --------->ATHB12 ----WOX13(1) <---------ANAC58--------->ARR11(3)   <-------TEIL   <---------WOX13(1)   gaagtgtggataaattgcttaatctcagagatgattttgtatttgtgttcatatacattgctctttggattgatttcagatgttagttgattttgtgata  18111000                                     <---------At4g35610                                     --------->At4g35610                                     <---------ZAT2                                   <-----------RAV1(2)                                          -----                                  --------->TGA2(2)                                             -----                                 <-----------HVH21                 <---------ARR11(3)  --------->YAB1                        --------->ICU4                <---------MYB52(1)            --------->WOX13(1)         <---------ANAC58        <-----------TGA1    <----------DOF2               --------->MYB46(3)         <---------ANAC58       --------->ANAC46     ------>ZmHOX2a(1)           ----------->RAV1(1)   <---------At4g35610  <---------YAB1       ------->TEIL          --------->ARR11(3) <---------ATHB12   tttgcatcagagcttgtgttcatgttatgattctgcgtcagcttatgtatatatcctttggtttgtgtagttcttctgtagagcaacaatcaagaggcaa  18111100  Previous    Next  AGI:  At1g48950.1    Description:  zinc ion binding. similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G17210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68000.1); contains InterPro domain Zinc finger, C3HC-like; (InterPro:IPR012935) Range:  from: 18110565    to: 18113905    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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