Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       <---------ANAC46                                                                                     --------->DEAR3(1)                                                                                   ------>NtERF2                                                                                  --------->DEAR3(1)                                                                                  --------->ANAC46                                                                                 <---------LBD16                                              --------------->AGL15         <----------DOF2                                          <---------GLK1(1)               --------->HSFB2a(1)                                          --------->GLK1(1)               --------->HSFC1(2)                        --------->At4g35610   <---------------AGL15       <---------HSFC1(2)                        <---------At4g35610  <-----------------AGL2    --------->LBD16                     <------ZmHOX2a(1)   <---------ARR11(3)           --------->ANAC46--------->LBD16 ->ARR14(2)       <-----------RAV1(2) --------->LBD16           --------------->ANT--------->LBD16   gattagagagagacttggagccaggaagcttaatgagacccgagatttctctaatgggttgaagcacaatctccgaagctttctccgccgtggaaacaga  18074700                                                                    --------->ZAT18                                                                    <---------ZAT18                   ------->TEIL                                --------->O2                   --------->GLK1(2)                           --------->ANAC58              <------ZmHOX2a(1)                                --------->TGA1a              ====================================HOX2a_HOX2a  --------->ANAC46                     <          --------------------->WRI1       --------->ZAT14     ======================================       <-----------HVH21                   <------ZmHOX2a(2)   --------->ANAC58                  <---      --------->TOE2(3)                  <---------At4g35610 <---------ALFIN1                    ----      --------->TOE1(3)                  --------->At4g35610 --------->ANAC46  <-------TEIL  <-------   agccctaaccttcacaggacgaatctcagaaccatttagcatcagatcactcttcttcaatccccacgactgccctagagattcaaatcacacatctttc  18074800                                                                     ------>ZmHOX2a(1)                                                              <---------ARR14(2)                    -                                                              --------->ARR11(3)                    <                                                              --------->ARR14(2)                    -                                                              <---------ARR11(3)                   <-                                                        <---------ANAC55(2)                       <--                                                        --------->ANAC55(1)                     <----                                                        --------->ANAC46                 --------->ARR11(3)                                                        --------->ANAC58                 <---------ARR11(3)                                                        --------->ANAC55(2)             --------->RVE1(1) ----------DOF2                                         --------->ANAC58                --------->GLK1(1) ===bZIP_DOF<-------TEIL                               <---------LBD16                  <---------GLK1(1) ------------AGL15                               --------->ZAT14     --------->LBD16   --------->ARR11(3) ----------->AGL15                         --------->GLK1(2)--------->HSFB2a(1)        <---------ARR11(3) ---DOF2   --------->CCA1(2)          ---------->DOF2 --------->MYB52(1)      <---------AtLEC2 ------   ttctttaagctagatacaggcttcaaatctaaaaattttgaaaagaatcagagaactcacggaagttcttcctggtttgtgaatggagagatatctgaac  18074900                                                         <-------TEIL                           --------->ANAC58           <---------ANAC46                           --------->ANAC58           <------MYB46(1)                         ------>NtERF2                <---------ANAC58                        --------->DEAR3(1)            <---------ANAC58                        ----------->HVH21            --------->MYB46(2)                    --------->ZAT2                   <---------MYB46(3)                    --------->GLK1(1)                --------->MYB52(2) <------NtERF2      <---------GLK1(1)                --------->MYB55(2) -------->LBD16     <---------ZAT2                   <---------AtMYB61                          ----- ---------MYB46(3)  <---------At4g35610              --------->MYB111(1)                       ------ ----->NtERF2       --------->At4g35610              --------->MYB111(2)                   ------>NtERF2 --------ANAC46<---------------------WRI1      <---------ANAC46                           --------->ANAC58 -------LBD16----------->HVH21             ---------->DOF2     --------->LBD16            --------->ANAC58 -----DEAR3(1)--------->MYB52(1)         >>>>>>>>>TBF1<------MYB83     --------->ARR14(2) --------->RAP2.6(2) --->SPL7  --------->CCA1(2)      ---------->DOF2 <---------ARR14(2)   <---------ARR14(2) --------->ANAC46   ggcgggagaagagagacgacggagctccgacggaagaaaagaagaagaagcgggtttggtgcatccgagaatggatttggaagtgagagaagacgccatg  18075000                                                                                     <------MYB83                                                                                    <---------AtMYB61                                                                                    <---------MYB46(3)                                                                                    --------->MYB55(2)                                                                                    --------->MYB59         --------->ANAC58                                                           --------->MYB111(1)         --------->ANAC46                                                           --------->MYB111(2)   --------->GLK1(1)                          <---------AHL20(2)                    --------->MYB46(2)   --------->ARR14(2)             <---------WOX13(1)     <------ZmHOX2a(1)         <---------MYB55(1)   <---------ARR14(2)           --------->ATHB12      <------ZmHOX2a(1)  <------MYB46(1)         <---  <------ZmHOX2a(1)   ---------->DOF2      <---------ARR11(3)            <------MYB83<------MYB46(1) ---->YAB1    ---------->DOF2  <---------YAB1--------->AHL20(2)         <---------AtMYB61----------->ARR10 --->ICU4--------->ANAC58 ---------->DOF2  --------->ARR11(3)          <--------P  <--------P <------   atcaggattccaaggcaaaagactcaaagaaagatgattgagaaagatttaatagaggaggagagaaattggagttggtttaggggtaggtgagttatgc  18075100                                   --------->MYB52(2)                                       <--------                                   ----------->GT1                                       <---------ARR14(2)                                  *TSS                                                   --------->ARR14(2)                                 <--------P                                          <---------------                                <-------GAMYB                                        <---------------                           <-----------RAV1(1)                                       <---------------                           --------->ALFIN1                                         --------->MYB52(1) <---------YAB1         --------->GLK1(2)       <---------AtMYB61       --------->ARR11(3)  <-------- -------DOF2     --------->HSFB2a(2)          <----------DOF2           <---------ARR11(3)  <-------- ---YAB1         <---------HSFB2a(2) <---------ZAT6                   ------->TEIL<---------SPL7   tttgtgattctaaaaccttctgcaagaatgtgtgggttagtgatatagctttggtgagttttaaaaaacatgaacatcttgggccataccggttatggtt  18075200                               --------->ANAC58          <---------MYB46(3) -TOE1(3)                 --------->ANAC58               --------->MYB52(2) <-----------GT1 --AG<---------ARR11(3) ---------->DOF2   <---------MYB52(1)            <----------DOF2 --AGL2                --------->AtMYB61  <---------ARR14(2)            <---------DAG2 --AGL1        <----------DOF2 --------->ANAC58  --------->MYB52(2)  <---------ALFIN1 -TOE2(3)    --------->At4g35610<---------ZAT2 <---------MYB52(1) --------->ANAC46           -------- -YAB1  --------->WOX13(1)--------->ANAC58--------->ARR14(2)    --------->AtLEC2         <-----------   cgaccattatctatcagctttaaaaccaaagccaagcttgttccgatatgttagtttgtttgttccatacaacacttttttcaagcttaagacccaaaat  18075300                                         <-----------HVH21                                        <----------DOF2                                     <---------ALFIN1         <---------TOE1(3)           <-----------------AGL1      <----------DOF2           ---------->ARF1     <---------ANAC58       <---------ANAC58                      ---------->DOF2     <---------ANAC58       <---------ANAC58                ----------->GT1 -->DOF2 <---------TOE2(3)<---------ARR11(3)              ---------->DOF2 ------AGL1               --------->ARR11(3)      <-----------ARR10         <-----------------AGL3   cgcaatcgcttgaggtttcttaaaccaagttcttgtcttccactttcaggcatatgttagcaaagttaaaaagagccaacttaaactggaatcccattgt  18075400                                                           --------->ANAC58                                                           --------->AtLEC2                                                           --------->ANAC58                                                       --------->ARR11(3)                                                       <---------ARR11(3)                                                       <---------ARR14(2)                                                     ----------->ARR10                                                --------->At4g35610                                                <------MYB83                                                <------MYB46(1)                                               --------->MYB59                                               --------->MYB111(2)                                               --------->MYB46(2)                                               --------->MYB111(1)                                  <                                              <--------P<------ZmHOX2a(2)<-----------GT1            -                                              <---------MYB55(1)      <---------ICU4            -----                                           <---------TOE1(3)         --------->ICU4            ------          ---------->DOF2                  <---------TOE2(3)        <---------TOE2(3)        <-------   ttctctaaatacaaaagtcaccataaaaacttctacttctcgtttgaggtaggtgaagatcaggcaaactaatgtttacttcttggtcttcagtagtgtg  18075500                                                                         --------->At4g35610                                                                      <---------At4g35610                                  ------->GAMYB                 <--------ATHB1                               ----------->RAV1(1)              --------->AHL20(2)      --------->ARR11(3)       --------->MYB52(1)               --------->ATHB51      <---------ARR11(3)    --------->ANAC58                    <---------AHL20(2) --------->CCA1(2)          --------->ANAC58                    <---------ICU4 ---------ARR11(3)          --------->ANAC46                   --------->ICU4 -------->ARR11(3)         --------->WOX13(1)                --------->YAB1 <------ZmHOX2a(1) ---->REM1(2)         <---------AHL20(2)                    <---------AHL20(2) --->ALFIN1        --------->ARR11(3)                      --------->AHL20(2)   ----------->GT1 --ANAC46          <---------ARR11(3)              <-----------RAV1(1)--------->At4g35610   tagatatagatattccacatagattttatcaagcaacagaagaaaatttgtttttgttggatttaataatttagcagaggaatgggaaaatgaagaaaac  18075600  Previous    Next  AGI:  At1g48860.1    Description:  3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative. similar to 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase [Arabidopsis thaliana] (TAIR:AT2G45300.1); similar to 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (GB:P17688); similar to 5-enolpyruvylshikimate-3-phosphate synthase [Orychophragmus violaceus] (GB:AAL65913.1); similar to 5-enolpyruvylshikimate-3-phosphate synthase [Brassica rapa] (GB:AAS80163.1); contains InterPro domain RNA Range:  from: 18072375    to: 18075134    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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