Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           --------->ZAT18                                                                                        ------->GAMYB                                                                                     <---------ARR14(2)                                                                                     --------->MYB52(1)                                                                                     --------->ARR14(2)                                                                                  --------->TOE1(3)                                                                                  --------->TOE2(3)                                                                                  --------->AtMYB61                                                                                  --------->YAB1    --------->GLK1(1)         <----------DOF2                                  --------->WOX13(1) --AHL20(2)            <----------DOF2                                        <---------WRKY12------- ->AHL20(2)       ---------->DOF2                            ----------->GT1  <---------WRKY38(1)   < >AHL20(2)       ------>ZmHOX2a(1)       --------->LBD16   <---------GLK1(1) --------->WRKY18(1)   --   aaccagaattcaaaaactcctaaagctttcaactttccatctccccaattcgttctaatggaaatgtgaatcaaattcagtcaaccataactgccctaaa  18071400                                                                                              =======                                                                                              ------>ZmHOX2a(1)                                                                                              -------                                                                                              =======                                                                                             <-------                                                                                             <-------                                                                                       --------->ARR11(3)                                                                                       --------->ARR14(2)                                                                                       <---------ARR14(2)                                                                                       <---------ARR11(3)                                                                                     --------->HSFB2a(1)                                                                                 --------->ANAC58                                                                                 --------->ANAC55(2)                                        --------->GLK1(2)                        <---------ANAC55(2)                                        <---------ARR11(3)                       --------->ANAC46      <-----------GT1                   --------->ARR11(3)                       --------->ANAC55(1) --->DOF2                   <---------------AGL15            --------->YAB1      --------->ANAC58 -------TEIL  <----------DOF2      ----------->GT1        --------->YAB1        <---------LBD16 ------->CCA1(2)            --------------->AGL15 --------->ICU4--------->YAB1 --------->MYB52(1)   <   gattcaaattacacatctttcttctatatgctagaaacagaaaatctaagaaattatcgaaaataatcagagagagagaactcacggaagttcttcctgg  18071500                          <------NtERF2                         ------>NtERF2                         --------->LBD16                         <---------MYB46(3)               <------ZmHOX2a(2)              <---------ARR14(2)              <---------ARR11(3)              --------->ARR14(2)                                                   ------>ZmHOX2a(2)              --------->ARR11(3)                                                  <------ZmHOX2a(2)              <---------AGP1                                                     --------->ARR14(2)              --------->AGP1                                                     <---------ARR14(2)             --------->GLK1(1)                                                 <---------MYB46(3)    --------->SPL7      <---------ANAC46          --------->LBD16           <------MYB46(1)    <-------TEIL     <---------DEAR3(1)      <---------At4g35610            <------MYB83  <---------SPL7------>ZmHOX2a(2)            <---------ZAT2                --------->MYB111(1) <---------ANAC58   --------->SPL7           --------->GLK1(1)             <---------MYB46(3) <---------ANAC58----------->HVH21           --------->ZAT2                --------->MYB55(2) =====================HOX2a_HOX2a            <---------GLK1(1)             --------->MYB46(2) -->LBD16    <---------GLK1(1)               --------->At4g35610           <---------AtMYB61 ======================HOX2a_HOX2a      <---------------------WRI1         --------->MYB111(2) ----------AGL1--------->CCA1(2)       --------->MYB52(1)         <---------ARR14(2)          ------- ----------AGL2--------->At4g35610  --------->CCA1(2)             --------->ARR14(2) --------->LBD16 ---------------AtSPL8 <---------LBD16----------->HVH21        >>>>>>>>>TBF1<---------ANAC46  <------   tttgggtacggagagagatctgaacggcgggagaagagagacgacggagctccgagggaagagaagaagaaccgagtttggtggatccgagaatggattt  18071600                            <---------ARR14(2)                            --------->ARR14(2)                            --------->GLK1(1)                           <------ZmHOX2a(1)                                                 --------                     --------->YAB1                                                      <------NtERF2                    --------->ICU4               --------->ATHB12                    <------MYB83                ------>NtERF2                   <---------YAB1                       <---------MYB46(3)               --------->bZIP60(1)         ---------->DOF2                           <------MYB46(1)               --------->ANAC58        --------->At4g35610                          --------->MYB111(1)               <---------bZIP60(1)     <---------At4g35610                          <---------AtMYB61               --------->ANAC46   --------->ANAC46              ---------->DOF2     --------->MYB111(2) -->GLK1(1)    --------->ANAC58   --------->ANAC58         ----------->GT1          <---------MYB46(3) ---GLK1(1)  <---------ATERF1(1)  --------->ANAC58 <---------WOX13(1)               --------->ALFIN1   cgaagtgagagaagacgacgccatgatcaggattccaaggcagaagaaagatgattgagaaaggtttaaaggagagaaatttgaagttggtggcaatttt  18071700      <------MYB46(1)      <------MYB83                                                                                  -      <---------MYB46(3)                                                                          ---     --------->MYB111(1)                                                                         ----     --------->MYB111(2)                                                                         ----     --------->MYB46(2)                                                                          ----     --------->MYB55(2)                                                                         -----     <---------MYB46(3)                                                                        <-----     <---------AtMYB61                                                                         <-----     <---------DEAR3(1)                                                                        ------     --------->ALFIN1                                                                          ------    <---------MYB55(1)                                                                         <-----    <--------P                                                                                 <-----   <-------GAMYB<------ZmHOX2a(1)                          <<<<<<<<<TBF1                    <--------  <---------MYB46(3) --------->AHL20(1)                   *TSS   <---------MYB52(1)      <-----------GT1 ->ICU4       --------->MYB59 <---------MYB59     <---------AtMYB61                   <---------GLK1(2)   gagggggttggtgagttaggacatatattatgcctaattgcaaatggctcttgtggtcttcttcttcgttgtgcaaatgcaaatgcaaaattctccacct  18071800     --------->ZAT6   ----------->RAV1(1)  --------->MYB46(3) ------>MYB46(1) ------>MYB83 -------->ANAC46 ------>MYB46(3) ---->P -->MYB83 -->MYB46(1)                        --------->MYB52(1) ---->MYB55(1)                   --------->TOE2(3)           <------MYB46(1) ----MYB55(2)                    --------->TOE1(3)           <------MYB83 ----MYB46(2)                 ------>MYB46(1)           <---------AHL20(2)    <---------ZAT6 --->MYB46(3)                 ------>MYB83             <---------AHL20(1) <---------MYB52(1) --->AtMYB61                --------->AtMYB61          --------->AHL20(2) <--------P ----MYB111(2)              <---------MYB59            <---------AHL20(2)<---------MYB52(1) ----MYB111(1)    <----------ID1 --------->YAB1       <---------ATHB12  --------->LBD16 -ALFIN1  -------->P     <------ZmHOX2a(1)        ------------>CBF    <---------LBD16          ------   accaacaacactaacccaaaacgacgaggaccaaaccataactgagaatagttccaattaatttggtttatctccggttagtgttttcaagtgagatggg  18071900                                                                             ------->GAMYB                                 --------->YAB1                          --------->ANAC46                 -------->P   --------->HSFB2a(2)                      --------->ANAC46    <--------- ----->GT1 <<<<<<<<<TBF1      <---------HSFB2a(2)            ----------->RAV1(1)--------->ANAC46   caaatatcgcttcttcttcaacccctctgtttctataagagtcttctcatttgtgcaaaactccaacacaattacacaactcacaaaacttcactttgaa  18072000                               --------->YAB1       <-----------GT1                 --------->TOE2(3)                            <----------DOF2        <---------YAB1           --------->LBD16  --------                            ------>ZmHOX2a(1)   <---------YAB1            <---------LBD16    <------- -DOF2         --------->REM1(1)          ----------->HVH21    <-----------GT1   <-----------GT1   tttgagttgttcttactacaacttggaatcctttcatggtatctctgactcttattactaacttgataccctattaccctgaataacctcatccaagctt  18072100                                               --------->AHL20(2)  --------->ARR14(2)                   --------->At4g35610                         <---------CCA1(2)  <---------ARR14(2)         <<<<<<<<<<<<<<<<<LFY                    --------->ARR14(2)        <----- ->ZAT2                ----------->GT1 <------NtERF2     --------->TOE1(2)      ------>ZmHOX2a(1)  -- --ZAT2            <----------DOF2     <---------At4g35610           <---------ARR14(2)      <-------   ggagaatactcacttgtagcccttttggtaataacattggcagcaaaaaaaaaatagaacctgcaattgcatatttgcattcctcttatctcatttttca  18072200                                                         --------->MYB46(3)                                                        --------->ANAC46                                                        --------->ANAC58       --------->YAB1                                   --------->ANAC58 ------>ZmHOX2a(1)                           --------->ANAC46             <---------ZAT14 ------GT1               >>>>>>>>>>>>>>>>>LFY--------->ZAT6               --------->ZAT14 --------->RAV1(2) <---------At4g35610     <-----------GT1 --------->MYB52(1)                  ------ ----GT1          ------->TEIL         --------->WOX13(1)<---------MYB55(2)       <---------MYB46(3)   ctcctgcaactataagtatgcagctattgccattgtttcttcaattaacacaacttccaagcaccggttatcgcagtgtattgtttgttctgttcattct  18072300  Previous    Next  AGI:  At1g48850.1    Description:  EMB1144 (EMBRYO DEFECTIVE 1144); chorismate synthase. Identical to Chorismate synthase, chloroplast precursor [Arabidopsis Thaliana] (GB:P57720;GB:Q570J9;GB:Q93ZI3); similar to unknown [Populus trichocarpa] (GB:ABK95550.1); contains InterPro domain Chorismate synthase; (InterPro:IPR000453) Range:  from: 18068573    to: 18071758    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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