Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              --------->ANAC46                   <------ZmHOX2a(2)                        <---------ALFIN1                  <---------ARR11(3)                      <---------ALFIN1                  --------->ARR11(3)                 --------->HSFC1(2)                           <--              ---------->DOF2                        <---------HSFB2a(1)            <---------At4g35610        <---------MYB59 ----------->RAV1(2)          <---------HSFC1(2)      ------->TEIL         ---        --------->TOE2(3)                            --------->HSFB2a(1)  <---------YAB1 <---------At4g35610        --------->TOE1(3)--------->TOE1(3)         ---------->DOF2     ------>ZmHOX2a(1) --------->At4g35610   ctaagtaaaacctaaataaagatcaaacctgagcaacttgctcatccaattcagaaagttccacacccttctccttatgaatcttatgctgagccgaaaa  18064600                                                                                                 ----                                                                                                 ----                                                                                       --------->At4g35610       --------->ANAC58               --------->ZAT18                        --------->YAB1   -------       --------->ANAC58               <---------ZAT18           <---------ICU4         <---------At4g35610    ------>ZmHOX2a(1)       --------->TOE2(3)   <------ZmHOX2a(2)         --------->YAB1    <-------- -------ARR11(3)   ------->GAMYB      --------->ZAT14           --------->YAB1      ---------->DOF2-- ------>ARR11(3)  --------->MYB46(3)  <---------ZAT14          <---------ATHB12   <----------DOF2----   catctcctcactcaaatgcaacctccaaaaccttgatcagagcactctggatcaaaaacatttcaataatcaacaaaaatgatactttaagctcaacaca  18064700      --------->ANAC55(1)      <---------ANAC55(2)                                                                          <-      --------->ANAC55(2)                               <---------ZAT14                        <<<<<< ----->ANAC58                                  ---------->DOF2                                 <----- ----->ANAC58                      ------->GAMYB       <----------DOF2                       -------- >GAMYB      --------->ANAC58    --------->ANAC58   <-----------GT1       <---------CCA1(2) --------- -REM1(2)   --------->YAB1       --------->ANAC58----------->GT1        --------->YAB1    ----------- ------->ANAC46           --------->YAB1 --------->AtMYB61          <-------TEIL       --------->AtLEC2 ----->ANAC46--------->ANAC58--------->YAB1---------->DOF2     ---------->DOF2     <------ZmHOX2a(2)   cacaaaacacttaataagcatctagcattgatcacaacccagaccaaaagaaagtaactttactgaaaagttcatcatatcacagatcaatgcaacaatc  18064800    <---------AHL20(1)    <---------AHL20(2)    --------->AHL20(2)   --------->AHL20(2)                                              <------ZmHOX2a(2) --------->TOE2(3)                                                 --------->CCA1(2) --------ATHB12                                                   --------->AGP1 <<<ARR2                                                          <---------ARR14(2) ----ATHB12           <----------ID1                <---------CCA1(2)           --------->MYB52(1)  = ->WOX13(1)   --------->LBD16            ---------->DOF2          --------->ARR14(2)                - >MYB46(3) <---------At5g28300      --------->MYB46(3)            --------->ARR11(3)        --------- >RAV1(1) <-----------GT1      <---------------AtSPL8             <---------ARR11(3)        ---------   aaacattaaattttaccgcgaaatacaacaaatagagaacaaacaaagaaacccatctctgaaattaagatccaagagaatataacagaagagaacgaaa  18064900      ----------->RAV1(2)      <---------ZAT2      --------->At4g35610      --------->ZAT2      --------->TGA1a       <---------ARR14(2)                                                   ====      <---------At4g35610   --------->ARR14(2)                                               --------     ------->TEIL   >>>>>>>>>>>>>>>>>LFY                                  ===========================  --------->ANAC58  ------>NtERF2                                       --------->ALFIN1  -----------  --------->ANAC58  <<<<<<<<<<<<<<<<<LFY      --------->At4g35610      <------ZmHOX2a(1)<----------DOF2  --------->ANAC46  --------->LBD16           <---------At4g35610     *TSS<------ZmHOX2a(1)  ======== ===============bZIP_DOF <---------ATHB12     --------->LBD16       <---------HSFB2a(2) ------------- --------->DOF2    --------->ANAC46         <---------LBD16  ---------->DOF2    ---------->DOF2  <--- >ANAC58        --------->ARR14(2)      <-----------ARR10 --------->TOE1(3)  <------ZmHOX2a(1) <----- >ANAC58        <---------ARR14(2)  <---------At4g35610   --------->TOE2(3)  ========================   caaaacgcacctgaggctaatccgccaatggatactgaagctaatctccgctgaaaaaaaccctaaagctcgaggaggaggataaagagactttataaag  18065000                                     <------MYB83                                     <------MYB46(1)                                    <---------AtMYB61                                   <--------P                                  --------->REM1(2)                                 --------->ALFIN1                                <-------MYC4                                ------->MYC4                                ------->MYC2                                <-------MYC2 >>>>>>>>>ARR2       --------->MYB46(3)       <-------MYC3 >>>>>>>>>ARR2      --------->RAP2.6(3)       ------->MYC3 >>>>>>>>>ARR1    ----------->HVH21          --------->ANAC55(2)   ------>ZmHOX2a(2)           <---------O2  <------------CBF --------->ARR11(3)            --------->TGA1a <---------ARR11(3)            <---------ANAC55(2) =========HOX2a_HOX2a          <---------TGA1a -->DOF2  <---------DEAR3(1)   --------->O2  >>>>>>>>>ARR1 =========HOX2a_HOX2a          =======================================bZIP_DOF >TBP--------->MYB52(1)        =============MYC_MYB ========================================bZIP_DOF    --------->AHL20(2)                            <- -->AGL15--------->At4g35610   <--------ABF1<------ZmHOX2a(1)              <---------ARR14(2)      <- ---ZmHOX2a(1)                 <---------ANAC46----------->GT1             <-----------ARR10       <- ----TOE2(3)<------NtERF2 ----------->HVH21<---------YAB1         <---------MYB52(1)               <- =========HOX2a_HOX2a   --------->YAB1    <---------TOE2(3)---------->DOF2 --------->ARR14(2)      <-   gatgatctaacggctgcgaattactaacatgacacgtgtaggtttaggattgtaagtaaatgaaagccgtttgatcaaatctgagccgttcaatgtagat  18065100                                                                                                  ---                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                               <-----                                                                                          --------->LBD16                                   ------->MYC2                                          *TSS  ------        <---------DOF5.7(2)        <-------MYC2  ------->TEIL  <---------HSFB2a(2)      <---------LBD16      --------->DOF5.7(2)          <-------MYC3  --------->ARR14(2)                    ------>NtERF2    <---------ANAC46              <---------ANAC55(2)          --------->HSFB2a(2)  ------>NtERF2<---    <---------ANAC58              --------->O2   <---------ARR11(1)                 <---------ATERF1(1)    <---------ANAC58              <---------O2========================HOX2a_HOX2a   <---------RAP2.6(3)   <------NtERF2             <---------At4g35610<---------ARR14(1)                 --------->RAP2.6(2) <------NtERF2          ------->MYC3          ------>ZmHOX2a(2)--------->LBD16     --------->DEAR3(1) --------->ALFIN1       <-------MYC3   <-----------GT1         ------>ZmHOX2a(1)   ----------->HVH21 <---------DEAR3(1)    --------->O2------->MYC3 <---------CCA1(2)                  >>>>>>>>>>DREB1A --------O2       --------->ANAC46<---------TGA1a<-----------ARR10                 <---------ETT(1) --------ANAC58   --------->ANAC58--------->TGA1a<---------ARR14(2)           ---------->DOF2 ------- --------ANAC46 ---------->DOF2   --------->ANAC55(2)         --------------->AGL15>>>>>>>>>>DREB2A - --------bZIP60(2)--------->ANAC58<---------ANAC46      <---------ICU4 >>>>>>>>>GATA-1<---------ALFIN1 --------ANAC58 ============================bZIP_DOF   <---------YAB1----------->GT1<-----------HVH21   ggcgtggcgttaacttaacaaagccacgttttgctcacgtgttactgatcgtatcttatcatttcctcgaatagataaacaaaagccgacaccggagaga  18065200                                                                         <---------ICU4                                                                         --------->ATHB12                                                                     <---------YAB1                                                                   --------->YAB1                                                                 <---------ARR14(2)                                                                 --------->ARR14(2) --->ZmHOX2a(2)                                                  <---------ARR11(3) -----ARR11(3)                                            --------->ANAC46 -----ARR14(2)                            --------->TOE1(3)      --------->ARR11(3) ---->ARR14(2)                       <----------DOF2      --------->ANAC58 ---->ARR11(3)                    <-----------GT1         --------->ANAC58 ----GLK1(1)         <----------DOF2 <---------DAG2      <---------LBD16<---------YAB1           <--- --->GLK1(1)<----------DOF2  <---------ANAC58            <---------At5g28300           ---------->DOF2 ---ZmHOX2a(2)     <---------At4g35610    --------->TOE2(3)      --------->GLK1(2)   --------->ANAC58 ---->ARR10 <---------DAG2   <---------ANAC58---------->DOF2    <---------GLK1(2)    --------->ANAC58 ----->ZmHOX2a(1)<---------LBD16 ---------->ID1         --------->MYB52(1)   ----------->GT1  <------   tccttaccgtctcactttctccgcttctcttgtttgtcacttttcgttaaaccccaattcacggcagaatcttgataattggagaaaacgaaagcgttta  18065300                                                  <-------GAMYB                                                 <------MYB46(1)                                                 <------MYB83                             <---------At4g35610                                                <---------MYB46(3)                       --------->GLK1(2)                                  <-------GAMYB--------->ALFIN1                         <---------GLK1(2)                                 --------->MYB46(2)   <-------GAMYB                    <------ZmHOX2a(1)                                 --------->MYB111(1) --------->MYB46(2)              <---------TOE2(3)     <---------ANAC46            --------->MYB111(2) --------->MYB52(2)        <---------AHL20(2)   <---------ANAC46              <---------MYB46(3)<---------MYB52(1)          --------->AHL20(2) --------RAV1(1)              ------------>MYB.PH3(2)<---------MYB46(3)      <----------DOF2 ---ARR14(2)      --------->YAB1 --------->MYB52(2)<--------P              ------>ZmHOX2a(1)   tggtgttgtgggagaacaattcatagttgtgaagttagttggattcaaggtgggttagttgagaaaacattgacttcctctttaatttaggaatctgatc  18065400                                             <---------ARR14(2)                                          <---------ANAC58                                          <---------ANAC58                                 --------->ARR11(3)                                          <---------ANAC46                                 >>>>>>>>>>GT-1                                         <-------TEIL                                     --------->YAB1                                      --------->ZAT2                                    <---------WOX13(1)           ------>MYB83               <---------At4g35610                         <---------YAB1           ------>MYB46(1)            --------->At4g35610                     <---------GLK1(2)         <---------MYB111(2)          <---------ZAT2                          --------->ARR11(3)         <---------MYB46(2)    --------->ATHB12                             ----------->ARR10        --------->ANAC46      <---------YAB1 --------->ARR14(2)      ---------->DOF2 <---------YAB1   agaaatgttcaccaaactagtcagactcacatatgatttgagctgcgtaaactctgtgttaaaacttcaaataaagtttagattttgatgaatgatatag  18065500  Previous    Next  AGI:  At1g48830.1    Description:  40S ribosomal protein S7 (RPS7A). Identical to 40S ribosomal protein S7-1 (RPS7A) [Arabidopsis Thaliana] (GB:Q9C514); similar to 40S ribosomal protein S7 (RPS7B) [Arabidopsis thaliana] (TAIR:AT3G02560.2); similar to 40S ribosomal protein S7 (RPS7B) [Arabidopsis thaliana] (TAIR:AT3G02560.1); similar to 40S ribosomal protein S7-like protein [Solanum tuberosum] (GB:ABA40437.1); contains InterPro domain Ribosomal protein S7e; (InterPro:IPR000554) Range:  from: 18063310    to: 18064970    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g48840.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G18350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68070.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT01350.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN84081.1); contains InterPro domain Protein of unknown function DUF639 (InterPro:IPR006927) Range:  from: 18065189    to: 18068699    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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