Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               ------->GAMYB            --------->MYB46(3)            <---------MYB52(2)       --------->ANAC58                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       -----       --------->ANAC58                       <-----------HVH21  --------->ATHB12             <------ ------->ARR14(2)                            --------->WOX13(1)  -------->HAHB4      <----------DOF2 --------ARR11(3)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  ----------->RAV1(1) ------->ARR11(3)                      --------->TOE2(3)        <---------ATHB12  --------->GLK1(2) --------ARR14(2)                    ------->TEIL  --------->TOE2(3)          --------->RAP2.6(2)<--- --------ARR11(1)               <---------ANAC58  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <---------TOE2(3) -------CCA1(2)------->TEIL     <---------ANAC46  --------->At4g35610       --------->At4g35610------ ---->YAB1--------->MYB52(1)    <---------ANAC58  <---------At4g35610      --------->ANAC46   -------   atatcttgaaggcaacgaacttagcaatagaattgcttgaacctcatcagtcacctcaatctgcaaatgattcaaatcagccacaatctttaagaaatca  18010100      <---------YAB1  --------->ARR14(2)  <---------GLK1(2)                                              <---------------AGL15<---------ICU4 ---->TOE2(3)                 ------->TEIL                 ---------->DOF2            --------->YAB1 ---ATHB12               <---------ANAC58           --------->At4g35610              <---------ATHB12 ------YAB1              <---------ANAC58           <---------At4g35610         <------ZmHOX2a(2) --->YAB1        <---------ANAC58                   <---------ZAT2      <---------ANAC46 -->ICU4         <---------ANAC58   ---------->DOF2 --------->ZAT2     <---------TOE2(3)    ---------   tcaatattctcatcgattttcttgttttcttgcatcttaaaagtatagaaacttagctgagtaaagactctatgaggtagagatcgaatcatgaacaatc  18010200                    --------->At4g35610                                       <------ZmHOX2a(2)                    <---------At4g35610                   --------->ARR14(2) <---------ARR11(3)              --------->HSFC1(2)                     <---------ARR11(3)      --------->ARR11(3)              <---------HSFC1(2)                     --------->ARR11(3)  <------ZmHOX2a(1)             --------->ANAC58               <----------DOF2            <---------TOE2(3)         <---------HSFB2a(2)               =====================================HOX2a_HOX2a     <---------GLK1(1) <---------ZAT14     ------>ZmHOX2a(2)           <---------TOE1(3)   <---------DAG2    <---------ZAT6 <-----------RAV1(1)   --------->ARR11(3)        --------->TOE2(3)       <--------- >MYB46(3)   --------->ANAC58            <---------ARR11(3)     ----------->RAV1(1)   <----------DOF2   gatctagagttccccaagcttctgctgcagtttgacatagctcgatctttcttaagaccttatctgcaacattaaggaagatcacattctttgctttatc  18010300                                                     ------>ZmHOX2a(2)                                                    <------ZmHOX2a(2)                                                    --------->HSFB2a(1)                                                    --------->GLK1(1)                                                   --------->ARR14(2)                                                   <---------ARR14(2)                                                   <---------ARR14(3)                                                   --------->ARR11(3)                                                   <---------ARR11(3)                                                   <---------ARR11(1)                                                   <-----------ARR10            <------NtERF2                                                   --------->ARR14(3)        <------NtERF2                                                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 <---------CCA1(2)<---------ARR14(1)         --------->At4g35610                      <---------At4g35610         <---------CCA1(2)         ----------->RAV1(1)                      ----------->RAV1(2)        --------->LBD16   <---------ZAT14                      --------->At4g35610<----------DOF2  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)       --------->ANAC58   <---------ANAC58     <---------LBD16     --------->ZAT14             ------    --------->WRKY18(1)   <---------ANAC58   <-----------GT1 <<<<<<<<<TBF1<---------At4g35610-------- -DOF2 --------->ANAC58  <------------------------ANAC81  <<<<<<<<<TBF1   --------->At4g35610<-------   acatcgctcaagccttgctgcatcatctgcgtctcgtttcttccttttctccggatcttcttcttcttctgcagtgagcggcagagacgatgttccgatg  18010400                                                                                               ------                                                                                      ===============                                                                                ------>ZmHOX2a(2)                                                                                =====================                                                                               ======================                                                                 ------>ZmHOX2a(1)   <------ZmHOX2a(2)                                                                 =====================HOX2a_HOX2a                                                                 ============================HOX2a_HOX2a                                                                 ===========================HOX2a_HOX2a                           <---------GLK1(1)    --------------->AGL15          <------ZmHOX2a(2)-----                           --------->CCA1(2)    <---------HSFB2a(2)           --------->ARR11(3)-----                          --------->ARR11(1)    --------->HSFB2a(2)       ---------->DOF2 --------->GLK1(1)      ------>ZmHOX2a(1)   --------->ARR11(3)    <---------------AGL15 --------->WOX13(1)  <---------GLK1(1)     --------->TOE2(3)    --------->ARR14(2)   ----------------->AGL1------>ZmHOX2a(2)------>ZmHOX2a(2)     --------->TOE1(3)    <---------ARR14(2)   ----------------->AGL2================================  <---------ARR11(3)    ----------->ARR10  ---------->ARF1       ======================HOX2a_HOX2a--- ----->HVH21    ----------->HVH21      <---------ANAC58        ----------->RAV1(2)   ================ ->At4g35610    ----------->TGA1       <---------ANAC58   --------->GLK1(1)   <---------ARR11(3)----- --At4g35610    <---------ATHB12     <---------YAB1       <---------GLK1(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   acaacatccttaagtccaatgacgcttagatatgccataatccttgtcttccacaaggagaaatctcctgatccatcaaagatcgcgatcggagttccta  18010500       --------->ARR14(1)       --------->CCA1(2)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <---------GLK1(2)         XXXXXXXXXXXXXXXXXXXX>MIR845A      <---------ARR14(2)       <---------At4g35610      --------->ARR11(1)       --------->At4g35610    ----------->ARR10          <---------ZAT2          <---------MYB59 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 ------>ZmHOX2a(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                --------->CCA1(2) >ZmHOX2a(1)                   XXXXXXXXXXXXXXXXXXXXX>MIR845B =HOX2a_HOX2a               <xxxxxxxxxxxxxxxxsmallRNA(s) =HOX2a_HOX2a               <---------MYB52(1)        <------ZmHOX2a(2)                   <xxxxxxxxxx =HOX2a_HOX2a          ------->GAMYB                 --------->AGP1                    <xxxxxxxxxxxxx --->P--------->ARR14(2)   <-----------HVH21         <---------AGP1                    <xxxxxxxxxxxxx ->MYB46(1)           --------->MYB46(3)             --------->ARR11(3)              <xxxxxxxxxxxxxxx =HOX2a_HOX2a         <---------MYB55(2)             <---------ARR11(3)            --------->ANAC58 ------------------>WRI1  ------->GAMYB              <-----------ARR10             --------->ANAC58 =HOX2a_HOX2a*TSS     <---------MYB111(2)        ---------->DOF2  ------------>CBF --------->ANAC46 ->MYB83<-------TEIL  <---------MYB52(2)------------>CBFxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxx   ccatcttagattcgcactcgctcaacaaccgtgagctctgataccaatttgtaaagatctaacttcacttcaatctcacagacacacgaatcaacttcag  18010600                                                                                                    <                                                                                                  ---                                                                                             <xxxxxxx                                                                                            <xxxxxxxx                                                                                           <xxxxxxxxx                                                                                          <---------O2                                                                                          --------->O2                                                                                          --------->ANAC55(2)                                                                                          --------->REM1(1)                                                                                          <---------ANAC55(2)                                                                                          <xxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                     --------->ANAC58                                                                                     --------->ANAC58                                                                                 --------->LBD16 <---                                                                                 xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxxxxxxxx                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       xxxxxxxxxxxxxxxxxxxxxx          <------------CBF                                                     <---------LBD16   <xxx     --------->GLK1(2)                                                         <xxxxxxxxxxxxxxxxxxxxx  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->At4g35610       <---------DOF5.7(2) xxxxxxxxxxxxx --------->YAB1 --------->YAB1          --------->DAG2           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxsmallRNA(se3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      <xxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxsmallRNA(s2)           ---------->DOF2              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)-- xxxxxxxxxxsmallRNA(le3)    ---------->DOF2                 <-----------GT1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxsmallRNA(i2)   ---------->DOF2---------->DOF2  --------->GLK1(2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(i2) ----------->GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxx   cactaagaatcgaattgatcagaactgaaagaaagtaaaagaaaagctgaacacagagaatttaacgagttcacgttccaaaccggaacgctacgtctcg  18010700            <---------HSFB2a(2)            --------->ANAC46           <---------LBD16    --------->ARR14(2)    <---------ARR14(2) ------NtERF2--------->LBD16 ------>DEAR3(1) xxxxxxxxxsmallRNA(i) xxxxxxxxsmallRNA(i) xxxxxxxsmallRNA(s) xxxxxxsmallRNA(s) xxxxxxxxxx>smallRNA(si3) xxxxxxx>smallRNA(fl3) ------LBD16--------->HSFB2a(2) xx>smallRNA(se3) xx>smallRNA(le3) >smallRNA(le3)              --------->TOE1(2)                                    =================== x>smallRNA(le3) --------->ARR14(2)                                           --------->ANAC46 x>smallRNA(se3) <---------ARR14(2)                                         <---------ALFIN1 xxxxxxxxxxxxxsmallRNA(i) --------->ARR11(3)                               --------->ZAT14 xsmallRNA(fl3) --------->GLK1(1)                                          <---------ZAT18      ----- xxxxxxxxx>smallRNA(fl3)  <---------ARR11(3)                               <---------ZAT14<----------DOF2 xxsmallRNA(fl3)<---------GLK1(1)                               <----------DOF2   ------>ZmHOX2a(1) ------->LBD16 --------->ARR14(2)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxx>smallRNA(si3)      <<<<<<<ZML2                   <----------DOF2--------->ZAT6     -----------   ccggagaaacctctccggaaatccactagaacttgggaacttagtctctgttacaatgctttcaagctttctctcactacactcctctctctctttgatc  18010800                                                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                --------->ANAC58    x                                                                                --------->ANAC58    x                                                                              ---------->DOF2       x                                                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxx            <-----------GT1                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)            --------->YAB1                                                 --------->AtMYB61       xx   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  ------->GAMYB                                            <---------At4g35610<xxxxxxxxxxxxxxxxxxxxxx --------->MYB46(3)                            --------->CCA1(2)      <xxxxxxxxxxxxxxxxxxsmallRNA(si3) <------------MYB.PH3(2)                      <---------ARR11(3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <---------MYB52(2)  <---------TOE2(3)        --------->ARR11(3)     ---------->DOF2              <xx ==HOX2a_HOX2a      --------->MYB52(1)        <---------ARR14(2) <---------------------WRI1      xxxx ->ZmHOX2a(2)    <------ZmHOX2a(2)      >>>>>>>>>TBF1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <xxx ---------->WRI1<---------ARR11(3)   >>>>>>>>>TBF1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          <---   tcaacaaactcttatcacgatctaacgaattacagagaagaagaagaagatatagttacagagctcatgcgaaaagaccaaaacgccctcaagcttgtta  18010900                               ------->MYC3                               ------->PIF5                               <-------MYC3                               ------->MYC2                               <-------MYC4                               <-------MYC2                               <-------PIF5                               ------->PIF4                              <---------TGA1a                    <-------MYC2                    ------->MYC2                    ------->MYC3                    <-------MYC3                   <---------TGA1a                   =====================bZIP_bZIP                   --------->TGA1a                   --------->O2<-------PIF4                   <---------O2------->MYC4                   --------->ANAC55(2)                   <---------ANAC46            --------->ANAC58  ==============================MYC_MYB         <---------At4g35610  <---------O2         --------->At4g35610  ==================================================bZIP_DOF         <---------ZAT2       --------->ANAC55(2)         --------->ZAT2       --------->TGA1a       xxxxxxxxxxxxxxxx>smallRNA(s)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) =======================================bZIP_DOF                               --------->MYB52(2) ============================bZIP_DOF                                        <---------MYB52(1) <----------DOF2   =========================================MYC_MYB          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxx>smallRNA(le3)<---------ANAC55(2)                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                  <-----------HVH21 xxxxxxxxxxxxxxx>smallRNA(s)  --------->O2                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xsmallRNA(si3)  <---------ALFIN1                   ------->GAMYB <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxx>smallRNA(i)   <---------ANAC58    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xsmallRNA(l2)  ----------->HVH21                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxsmallRNA(s)    <---------ANAC55(2)----------->RAV1(1) <----------DOF2      xxxxxxxxxxx xxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---------ALFIN1 xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ----------->RAV1(1) ------YAB1 --------->ANAC58  <---------ANAC58--------->YAB1  --------->HSFB2a(1)       <---------ALFIN1   tgactttagtcagctcgcctcacgtgtttctcacgtgcttcccttgaatcacaacagacttcgaaccctctctttcaccgatagtttctcccacacttag  18011000  Previous    Next  AGI:  At1g48680.1    Description:  transposable element gene. copia-like retrotransposon family, has a 1.2e-298 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana) Range:  from: 18006420    to: 18010513    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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