Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        --------->YAB1                                                                                     <---------YAB1                                                                                    --------->AHL20(2)                                                                                    <---------AHL20(2)                                                                                    --------->AHL20(1)                                                                                   --------->YAB1                                                                                  --------->ICU4                                                                             --------->ANAC58        --------->YAB1                                                       --------->ANAC58  --------->YAB1                                                             --------->ANAC46 -------->ANAC58                                  <---------LBD16          --------->ANAC46 -------->ANAC58                             <-----------GT1             <---------ALFIN1 -------->ANAC46                       <---------YAB1                   --------->ZAT14 ----->MYB46(1)                   --------->ANAC55(2)                   <---------ZAT14 ----->MYB83                      <---------ANAC55(2)                   <---------ZAT18 -------->AtLEC2      ------>ZmHOX2a(2)--------->ICU4           <---------ZAT6--------->LBD16   ccaagcaaaatcaaaactagttgatccattttagttatgtgatgattttaccttcggagggacatagtgatcagtccacccgaaattataatgagactac  18004500                                        --------->TOE2(3)                                        --------->TOE1(3)                                    ------>MYB46(1)                                    -------->P                                    ------>MYB83                                  ------->GAMYB                                  --------->AtMYB61                                 --------->MYB46(3)                                 <---------MYB55(2)                                 <---------MYB52(2)                            --------->ANAC58                            --------->ANAC46                            --------->ANAC58                           --------->DAG2                                   ----------------->AGL1                       --------->AHL20(2)           <---------ICU4       <---------WOX13(1)                 ----------->GT1--------->ANAC58    --------->YAB1     --------->ATHB12        ------            --------->STY1(2)   -------->P         <---------YAB1      <---------ICU4          <-----            <---------STY1(2)   --------->ANAC58 <---------ICU4       <---------AHL20(2)       ------      --------->ZAT18  --------->YAB1<---------ALFIN1                 --------->AHL20(2)     --------    <---------------AtSPL8---------->DOF2        --------->YAB1      <---------MYB52(1)   <----------   tatgtaagagtactagctagagtaataaaaaagcaaccaacaccttaaaaatcatcataactagttcatccattaattgccatatgagaaatttacctac  18004600                                                                                                   <-                                                                                                   --                                                                                           ------->GAMYB                 <-------TEIL                                                             --------->MYB46(3)                --------->TCP16(2)                       ------->MYC3                --------->ANAC55(2)              <------MYB46(1)                            ------->MYC2               <---------TOE2(2) <------ZmHOX2a(1) ----------->RAV1(1)           --------->ANAC58                   <---------TOE1(2) >MYB83  <---------YAB1  --------->GLK1(1)       --------->ANAC58                --------->YAB1   --- ----LBD16    <------MYB83             <---------ZAT18   <-------MYC2            --------->ATHB12 <-- >MYB46(1)   --------->MYB59           --------->ZAT18   <-------MYC3           <---------YAB1  <---- ->TOE2(2)--------->ATHB12         --------->LBD16    <---------ALFIN1        --------->YAB1--------- -GT1    <---------ZAT6  <---------GLK1(1)       --------->ANAC46          --------->YAB1 <---------MYB55(2)   ggaggaacatagtgataggtccaccagaaatcacatccgagggctctccattcgcaacacgttcgatataaggcttaacatcatcataggtaaccaccgg  18004700                                   --------->REM1(2)                           <---------At4g35610             <-----------RAV1(1)                           --------->At4g35610      <---------RVE1(1)                           --------->GLK1(1)       --------->ARR14(2)                           --------->ZAT2          --------->ARR11(3)                           <---------ZAT2          <---------ARR14(3)          <---------ARR14(2)    <----------DOF2    --------->YAB1              --------->ARR14(3)          --------->ARR14(2) --------HSFB2a(1)    <---------YAB1   <------ZmHOX2a(1)   --------->ALFIN1    --------->GLK1(2) ------->HSFB2a(1)<----------DOF2 --------->ALFIN1 <---------ARR11(3)          --------->ARR11(3) ------>SPL7 --------->ANAC58    --------->LBD16   <---------ARR14(2)          <---------ARR11(3) -----TEIL   --------->ANAC58   <---------ANAC46 ----------->ARR10    <---------ANAC55(1)   <-------- -----MYB52(1)    <---------DAG2<---------O2 --------->At5g28300  <----------DOF2           --------- >MYB52(1) ---------->DOF2 <---------GLK1(1)----------->GT1<---------ZAT6      <-----------ARR10   tacgttctttttgaaaagcactttatcagagctcccgtggaggaagcggtgaagatattcagtgttggcattaagtgtgagtatctcttccaatacgtct  18004800                                                                                          --------->AHL20(2)                                                                                         <---------AHL20(1)                                                                                         --------->AHL20(1)                                                                                         <---------AHL20(2)                                      --------->WOX13(1)                             <---------AHL20(2)                                     <-------TEIL                                <----------DOF2                                    <------ZmHOX2a(2)                            <---------DAG2                                   <---------ARR14(2)                         <---------AHL20(2)                                   --------->AGP1                        <---------AHL20(2)         <----------DOF2           --------->ARR14(2)                    --------->AHL20(1)   <---------ARR14(2)              <---------ARR11(3)                    --------->AHL20(2)   --------->ARR14(2)           --------->HSFB2a(2)                     --------->AHL20(2)<---------AHL20(2)   ------->TEIL               =============HOX2a_HOX2a        --------->YAB1  <-----------GT1  <-----  <---------CCA1(2)           ------>ZmHOX2a(1)            --------->YAB1<---------AHL20(1)    <----- -ANAC55(2)              <---------At4g35610              <-------TEIL  <---------ATHB12 --------->AHL20(2) >ANAC55(2)              --------->At4g35610   <---------AHL20(2)   ------------>CBF --------->AHL20(2)   tcttgtatctgctttgcattcgatgttagctcctccagatccatcagatttaaacttggattcatcatatttcaataaatttactttttaatttatttgg  18004900                                 --------->ANAC58                                 --------->ANAC58                                 --------->ANAC46                                <---------LBD16                           <---------------AGL15                           <----------DOF2               <---------At4g35610    ------>ZmHOX2a(2)     <-----------------AGL1  --------->ARR11(3)      <-----------------AGL3                           <-----------HVH21 -MYB46(1)     --------->At4g35610            --------->ZAT6   ----------->GT1 --------->MYB46(3)   < -MYB83   <---------CCA1(2)--------------->AGL15--------->ANAC46    ---------->DOF2           <------   ttttgatctctcatctctgctaaggggttctttatacggcagtatataacactaaacaaactaatttgtataaagaatgtcacaaccgatttgtttttat  18005000                    --------->WOX13(1)                --------->ANAC58            <---------ANAC55(2)           <---------ANAC58                      --------->AHL20(2)            --------->ANAC58              <---------ANAC58         <---------At4g35610            --------->ANAC58           --------->TOE1(2)           --------->ZAT2            --------->ANAC55(2)        --------->TOE2(2)           --------->At4g35610         ------       <---------ICU4     --------->ARR11(3)                       <---------ZAT2              ------     <---------GLK1(2) --------->YAB1 <---------ANAC58      ---------->DOF2     <---------AHL20(2) ---------AtLEC2--------->ANAC58      <---------ANAC58 <----------ID1          --------->YAB1------->TEIL ---AHL20(2)--------->ANAC46     ------------>CBF    <-----------GT1  <-----------HVH21     <--------   ttgcatagattattacgcaagtcagtcagaacttggacaatcgtgcgagtcgatttaacaacaaaagtaagctgtcaactattttaatctatttgtatct  18005100                                  <-----------GT1                                 --------->AHL20(2)                             --------->AHL20(2)                             <---------AHL20(2)                           --------->YAB1                           --------->TOE2(3)                                                  <------       <------ZmHOX2a(1) <---------YAB1                    <---------MYB46(3)                 -------     ----------->GT1     <---------TOE2(3)                <--------P               <----------DOF2    --------->CCA1(2)   --------->YAB1                  <---------MYB46(3)       ---------->ID1 --->YAB1               --------->AHL20(2)         --------->ZAT14           <----------DOF2  <------ --->TOE2(3)         --------->TOE2(3)             <---------ZAT14      --------->YAB1  <-----------GT1 -CCA1(2)          <---------AHL20(2)        <-----------GT1         <----------DOF2    --------->ANAC46   taatagataggaaaatgctaattcattaatattaattaactcgattttttcagtctagtggttgttcaagactttcatactttgtcttttacaccagatt  18005200                                                         --------->AHL20(2)                                                         <---------AHL20(2)                                                      <---------ARR11(3)                                                      --------->ARR11(3)                                             <---------AHL20(1)                                             --------->AHL20(1)                                           <---------AHL20(1) --------->AHL20(2)          <---------HSFB2a(2)              <---------ARR11(3) <---------AHL20(1)          --------->HSFB2a(2)         <---------YAB1<---------TOE2(3)       --------->AHL20(2) ---GLK1(2)                          <-----------GT1<---------TOE1(3)       <---------AHL20(2) -->ARR14(2)             <---------AHL20(2)--------->AHL20(1) <---------AHL20(2) ---ARR14(2)---------->DOF2 <---------WOX13(1)<---------AHL20(2) <---------YAB1               -------   tggagtttagttctaaaagaatgctacttaattgctgtttatcaatatatatttaagattttattttatttttgttaattttttgtttttccaatgtatt  18005300                                                           <-----------GT1                                      <---------At4g35610 <---------YAB1                                --------->ICU4       ----------->GT1 --------->AHL20(2) >TEIL                     ----------->GT1 ------>ZmHOX2a(1)       <---------TOE2(3)--------->YAB1   tgtattttcaaatgttttgacaaaatgagaagtaattctcatctcctcatcaaatttgttataacagttaagaaaatacaatgtattcatcaaacactga  18005400  Previous    Next  AGI:  At1g48670.1    Description:  auxin-responsive GH3 family protein. similar to auxin-responsive GH3 family protein [Arabidopsis thaliana] (TAIR:AT1G48660.1); similar to auxin-responsive GH3 family protein [Arabidopsis thaliana] (TAIR:AT5G51470.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68714.1); contains InterPro domain GH3 auxin-responsive promoter (InterPro:IPR004993) Range:  from: 18002614    to: 18004868    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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