Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      --------->SPL7                                                    <---------TOE2(2)             <-------GAMYB                                                    <---------TOE1(2)            <---------MYB46(3)                                                  --------->TOE1(2)             <---------ANAC46                                                  --------->TOE2(2)           --------->MYB52(1)                                 --------->ALFIN1 <---------SPL7            ------>ZmHOX2a(2)                               <---------ANAC46 <---------------AtSPL8     <------ZmHOX2a(2)                               <---------ANAC58 --------------->AtSPL8    --------->ARR14(2)                               <---------ANAC58 <---------------AtSPL3    <---------ARR11(3)        - <-----------HVH21           ------>MYB83  --------->TOE2(3)     --------->At4g35610                - --------At4g35610           ------>MYB46(1)    --------------->AtSPL3    --------->ARR11(3)     ---- ------->At4g35610    --------->ANAC46     --------->TOE1(3)  ---------->DOF2----------->HVH21   ---- >HVH21             --------->ZAT6     ---------->DOF2  <------ZmHOX2a(2) <---------ARR14(2)   ------   cagcttcagagatggtatacttacactcaccaagcgtgttccaaagcttaatcgtacgatcacgagaagcagagacgatctgacggttatcggtagagaa  17986600                                                                                           ------>ZmHOX2a(2)                                                                                           <---------LBD16                                                                                           ==========                                                                                          --------->ARR14(1)                                                                                          <------ZmHOX2a(2)                                                                                          --------->CCA1(2)                                                                                          ===========                             --------->ANAC58                                            --------->AGP1                             --------->ANAC58               --------->ARR11(3)           <---------ARR14(2)                             --------->ANAC46               <---------ARR11(3)           --------->ARR14(3)                            ------>MYB83                    --------->ARR14(2)           --------->ARR14(2)                            ------>MYB46(1)                 <---------ARR14(2)           <---------ARR11(3)                           --------->MYB52(1)              --------->GLK1(1)             --------->ARR11(1)                         --------->MYB46(3)          <--------P           <---------At4g35610            <---------ARR11(3)   --------->DEAR3(2) <---------MYB52(1)    --------->ZAT2 --------->ARR11(3)   ------->GAMYB  <---------ANAC58          <---------ARR14(2)            --------->At4g35610-------- ---------->RAV1(1)   ----------->HVH21     <---------GLK1(2)<------ZmHOX2a(2)           <---------ARR14(3) -------->MYB52(1)<---------ANAC46        ----------->ARR10<---------GLK1(1)     <-----------HVH21 ----->ANAC58     <---------ANAC58<----------ID1 <---------LBD16 --------->LBD16 <---------SPL7 ----->ANAC58  <----------DOF2  --------->MYB52(1) --------->LBD16       ------->TEIL  ----------->ARR10 ---->DOF2  --------->ARR11(3)------->GAMYB --------->ARR14(2)------>ZmHOX2a(2) --------->DEAR3(1)  <   agcaacagagagaacatctttcgtgtgaccaacgaaacgacgagtagattctccggtagcgagatcccagagacgaagctcaccgtcccaagatccggag  17986700                                                                             <---------SPL7                                                                         <---------ALFIN1                                                                --------->At4g35610                                                                <---------At4g35610                                                                ===================RAV ---------->ID1                                                                --------->LBD16    <---------ANAC58 ========================HOX2a_HOX2a                            ----------->RAV1(2)<---------bZIP60(2) ========================HOX2a_HOX2a                         ------>ZmHOX2a(1) --------->SPL7======== ->LBD16          <------ZmHOX2a(1)                    <---------ATHB12----------->RAV1(1)   <------- ---------------------WRI1                      ----------->HVH21<----------CDC5   <---------ANAC58   agagcgaattgtccatcggaggagagaacaacgtcttgaacgaagtgagagtgaccagtcatcctccgctgagcaacaccgtatgacttgtcttcctttg  17986800                          --------->ANAC58                          --------->ANAC46                          --------->TGA1a                          <---------O2                          --------->ANAC58                                    ----------->HVH21                          --------->O2                                        --------->WRKY38(1)                 --------->ATHB12               <---------DEAR3(1)           --------->ATERF1(1)               <---------WOX13(1)             <-----------HVH21              <------NtERF2        <--             --------->ATHB12     ----------->GT1 <------NtERF2              --------->At5g28300  ---            <---------YAB1<---------TGA1a    --------->ANAC46               <---------MYB46(3)    ---      --------->LBD16 <-----------HVH21      <---------bZIP60(1)           <---------DREB2C(2) <-----     <---------HSFB2a(2)  --------->ANAC55(2)--------->O2                  <---------ANAC46    ------     --------->HSFB2a(2)  <---------ANAC55(2)<---------O2--------->ETT(2)  <---------DEAR3(1)  <----- ===================================bZIP_DOF --------->TGA1a    <---------REM1(1)           --------- ---DOF2  <------ZmHOX2a(1) ----------->HVH21<---------TGA1a    --------->ALFIN1          --------->ALFIN1   tgagtttccagaggatgattgatttgtcacgcgacgaagttacaatcacgtcggagttatcgaccggtgtagcaatggcggtgaccatatcagtgtgggc  17986900                                                                      <------NtERF2 -------ALFIN1                                                       ------>NtERF2 ------>ANAC58                                                       ----------->RAV1(1) ------>ANAC58                                                    <---------RAP2.3(1) ----ZAT18                                                 <---------TOE1(3) --->ZAT18                                             --------->CCA1(2)                           <- ----PCF2                            <-----------RAV1(2)   <---------TOE2(3)                   *TSS-- >ALFIN1 <----------DOF2------>ZmHOX2a(1)     <---------TOE2(3)  <---------ANAC46    ----------->GT1   acacattgtgcctttcaacacgagtccttcagccatggttcagggtttgaggtcgagatttagggtttcggcgacaaaaatgggagagggcaaaatggag  17987000                                                                                                   --                                                                                                  <--                                                                                                 <---                                                                                         <----------DOF2                                                                                       <------NtERF2<                                                                                      ----------->RAV1(1)      <---------ARR14(2)       --------->ICU4                                         --------->ANAC58 --------DOF5.7(2)          <---------ZAT6 <----------DOF2                            --------->ANAC58 ------->MYB52(1)<-----------TBP     <---------TOE2(3)   ------------>CBF   --------->ATHB12---------   gtaacgagaaaccgagagtatttatagttagagataattagggttctttgttttcatttgtcaatagtttgggtctcttcatttgggccagcattaaggc  17987100                                                                                             --------                                                                                           <---------ANAC46                                                                                           <---------ANAC58                                                                                           <---------ANAC58           ------>MYB46(1)                                                      <---------GLK1(2)         <---------MYB59                <---------ARR14(2)                   <---------------AGL15         --------->MYB46(3)        <---------ICU4                            --------------->AGL15      <-----------GT1              <------------ATHB5                       <-----------------AGL2 ------->LBD16                     --------->YAB1       <----------DOF2     <-----------------AG<---- ----NtERF2------>MYB83            --------->ATHB51  --------->ARR11(3)     ========================= ------LBD16                      --------->ICU4     <---------ARR11(3)     ----------------->AGL2  - ---------MYB52(1)     <-----------RAV1(1)          <---------CCA1(2)       <-----------------AGL1  - ->DOF2 --------->ANAC46          <---------ATHB51--------->AHL20(2)        ----------------->AGL1  -   ccggtattctacccaacttggtttcatgttgggacaattatggaaccgagatttatatctttctgtttggaacgcttaaccagaattggtatagcttgtt  17987200                                                    <----------DOF2                                               <-----------GT1                                       <---------DAG2 --->GT1                        ----------->HVH21 <---------------AGL15 -------GT1    ------->GAMYB  <---------bZIP60(1) --------------->AGL15 =================================================================MADS_MADS                        <- -------->ANAC58              --------->bZIP60(1)<-----------------AGL1                           --- -------->ANAC58           ----------->HVH21 <-----------GT1                           --------->ARR11(3) -------->ANAC46        <-------TEIL   <----------DOF2                    --------->ZAT6 <-----------   acaagtcaatttgataaccacatgagtacatgacatgacaacttttttttctctcttttgggcaaaccccatgagaactctaccgagaagttattgtcaa  17987300                              <---------TOE2(3)                            --------->YAB1                            --------->AHL20(2)                         --------->WOX13(1)                       ------------>CBF                    <---------MYB46(3)                    <------MYB83                    <------MYB46(1)                    <---------DEAR3(2)   <-----------------AGL1         *TSS -----------CBF    <---------DEAR3(1)  --------->MYB52(1)        <------------CBF ------>DAG2      <---------------------WRI1                   <---------YAB1 -CBF         ---------->DOF2---------->DOF2                 <----------DOF2   aaattgaaatagactcaaaagtcggttcaattaaagtaaacaaaccgagtttggccatttcaacttttattgtaagaactaagaacacaacttcgactgt  17987400                                 --------->LBD16                                --------->HSFB2a(2)                                <---------ANAC46                            --------->GLK1(1)                --------->AHL20(2)       <---------CCA1(2)                   <---------AtLEC2       ---------->DOF2    <---------AHL20(2)     ------->GAMYB                 <-----------GT1<---------HSFB2a(2)         --------->AHL20(2)      --------->AtMYB61           <---------AHL20(2)  <---------LBD16              <---------AHL20(2)     --------->MYB46(3)         --------->CCA1(2)  <---------GLK1(1)            --------->ATHB12         -------->P        <---------ARR11(3)  <---------ARR14(2)         <---------WOX13(1) <------ZmHOX2a(2)        --        --------->ARR11(3)  --------->ARR14(2)       --------->ATHB12    <-----------HVH21<----------DOF2   ccctgtggaagatataattttacatgtccgaattccggagaagaaaaagatgaagtgattgattaaattgaaatcgatcacatcaaccatctctttctct  17987500  Previous    Next  AGI:  At1g48630.1    Description:  guanine nucleotide-binding family protein / activated protein kinase C receptor, putative / RACK, putative. similar to guanine nucleotide-binding family protein / activated protein kinase C receptor (RACK1) [Arabidopsis thaliana] (TAIR:AT3G18130.1); similar to Guanine nucleotide-binding protein subunit beta-like protein (GB:Q39336); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 17985441    to: 17986995    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g48635.1    Description:  PEX3/PEX3-2 (PEROXIN 3-2). similar to PEX3-1 (PEROXIN 3-1) [Arabidopsis thaliana] (TAIR:AT3G18160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68158.1); contains InterPro domain Peroxin-3; (InterPro:IPR006966) Range:  from: 17987372    to: 17989784    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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