Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            ------>ZmHOX2a(1)                                    <----------DOF2   --------->ARR14(2)                                  ---------->ID1      ------->TEIL<---------ZAT14    <----------DOF2                              <----------DOF2         <---------ARR14(2)      <---------YAB1                        ---------->DOF2              <---------CCA1(2) <---------ZAT14             <-   aaaccaatttagacccctcattgttctaaaggctttttcttttttctctggctctgtatcctatagactatagtatagttgttatagcttttgtttattc  17938200                             <---------ARR11(3)                           --------->ANAC58                  --------->ARR14(2)                           --------->ANAC58                  <---------ARR14(2)                     ---------->DOF2                 --------->AHL20(2)                    <-------MYC2               <---------ANAC46                      <---------AHL20(2)                    ------->MYC2               <---------ANAC58                     <---------AHL20(2)                     <-------MYC3               <---------ANAC58   --------->AHL20(2)--------->AHL20(1)                  <---------ANAC58       <---------ZAT18     ----------->GT1          --------->AHL20(2)                  <---------AtLEC2       --------->ZAT14 --------->ANAC58          <---------AHL20(2)                     <---------ANAC58       <---------ZAT14 --------->ANAC58         --------->AHL20(2)            <----------DOF2   -----       --------->ZAT18 --------->ANAC46      ------>ZmHOX2a(1)      ------->TEIL        <---------ANAC46 --------GLK1(2) ----------->GT1  <---------AHL20(2)<---------AHL20(1)      ---------->ID1 ------->MYC3   agattttagtacactgggcttgtaaaagcaagttatttatatatatcctataaatttaatttggatactgtatgttttgtctttactcttgcatgtgtat  17938300                                                                                        <---------AHL20(2)                                  <---------GLK1(2)                                     <---------AHL20(1)                                  --------->ARR11(3)            <---------DAG2          --------->AHL20(1)                                  <---------ARR11(3)         <-----------GT1  <---------WOX13(1)                               --------->HSFB2a(2)     <---------YAB1        <------------CBF       <                         <---------ARR11(3)        <----------DOF2         <---------ATHB51         -       ---------->DOF2   --------->ARR11(3)    <---------WRKY12 <----------DOF2      --------->AHL20(2) ------>TBP   --------->ZAT6   <---------HSFB2a(2) <---------DAG2          <---------YAB1          --   aaaaaacataaaagtaagactattcaagctcttctagattttgttgaagtcaactttatgtttatacttttttttcgataattgatataaaatatttcca  17938400                                                                                               <-----                                                                                             --------                                 ------->MYC2                                                <-------                                 ------->MYC3                                               <------NtERF2                                 <-------MYC2                                               ---------                              <---------ANAC46                                              ---------                             <------NtERF2                                                  <--------                --------->AHL20(2)                                                         ------>NtERF2                <---------AHL20(2)                                                       --------->ATERF1(1)               --------->AHL20(2)<-------MYC3                                       <---------DEAR3(1)       ---------->DOF2      ------>NtERF2                                       =====================   --------->At4g35610   <------MYB83                                     <---------ICU4<---------ATERF1(1)   <---------At4g35610   <------MYB46(1)                            --------->ANAC55(2)<---------DEAR3(1) ---------At4g35610     --------->MYB111(1)                   --------->AHL20(2)------>ZmHOX2a(1) -------->At4g35610     <---------MYB46(3)             --------->TOE2(3) <---------ATHB12<------NtERF2 --------->RAV1(1)  <---------AHL20(2)            --------->AHL20(2)--------->TOE2(3) <------NtERF2   ccagcagatgaaagtcatttaattagttggtgccatgtgctatatcagaaaataaaacattagtttatatacttaatcagtcctcgtcgtcgtcgccata  17938500                                                 ---------->DOF2                                       ------>ZmHOX2a(1)                                      <---------LBD16                                     ==============HOX2a_HOX2a                                     ------>ZmHOX2a(2)            --------->GLK1(2)       <------ZmHOX2a(2)            --------->ARR11(3)      --------->GLK1(2)      <------ZmHOX2a(2)            --------->ARR14(2)     --------->ARR11(3)            --------->ARR14(3)                                     <---------GLK1(1) ------TBP <---------GLK1(2)       <---------ARR14(3)                                  <-------TEIL ------->AGL15                     --------->ARR11(3)                                 <--------P --------AGL15                     <---------ARR11(3)                      <---------CCA1(1) -------->AGL2                     <---------ARR14(2)                      <---------RVE1(1) -------->AGL3                   ----------->ARR10    <----------ID1      <---------AHL20(1) ---------AGL3        <----------ID1===============HOX2a_HOX2a            <---------ARR11(3) ============HOX2a_HOX2a  ---------->DOF2   <------ZmHOX2a(1)             --------->ARR11(3)    -----   tatagtagatcaagaatcttggatgagacaaagagaagatcctggaggagaaaaagatgacaaaactcgtttccaagatatttaagaggttgatttctca  17938600                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    -                                                                                              -------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                            <--------                                                                                            ---------                                                                                           ------>MYB46(1)                                                                                           ------>MYB83                                                                                          --------->ABI4(1)                                     <---------ZAT2                                      <---------MYB55(2)                                     --------->At4g35610                                --------->MYB46(3)                                     <---------At4g35610                              <---------ALFIN1                                     --------->ZAT2                               --------->ZAT2 ----                            --------->WOX13(1)                                    <---------ZAT2 ----                         --------->ANAC58                                         --------->At4g35610                         --------->ANAC58                                         <---------At4g35610                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 <----------DOF2--------->AtMYB61                  <---------------AGL15                   --------->YAB1 <---------ANAC58--------->DEAR3(1) ----->DOF2       --------------->AGL15                  <---------ATHB12<---------ANAC58<---------ALFIN1   aagtcagtacatgtcttcttctactactagcaatctccctgctgcttcacaaacttccaatcttgagagccaattgctttcttcagctccaccacccgca  17938700         ------->PIF5         <-------MYC2         <-------PIF5         <-------MYC4    XXXXXXXXXXXXXXXXXXXX>MIR835-5P  <---------ANAC58  <---------ANAC58 -------->ARR11(3) ---------ARR14(2) ---------ARR11(3) -------->GLK1(2) -------->ARR14(2) -->LBD16------->MYC2 ->ANAC58------->PIF4 ->ANAC58------->MYC3 ->ANAC46<-------PIF4                                                                               < -LBD16  <-------MYC3                                            ----------->GT1                  <-- >MYB46(3)                                                ------->TEIL                            <-- ----->ANAC58                               <---------CCA1(2)<----------DOF2                    <---- ----->ANAC58                  <---------YAB1------->TEIL<---------CCA1(2)               ---------->DOF2   agtatcttgcacatgctctctctcgtctaatttgtgattaagttctgaatcttggttctgaatctttgtgtaaaaatgttttgcagagaagaaaagaggg  17938800         <---------YAB1         <---------TOE2(3)                                                                          -         <---------------AtSPL8                                                                <----- ------NtERF2                                    <---------ANAC55(2)                   --------->YAB1 -------WRKY38(1)            --------------->AGL15                          <---------ANAC46  <------ -------WRKY12            <-----------GT1        <---------ANAC46         --------->ZAT18 --------->AHL20(2) -------HVH21          --------->ARR14(2)  <-----------HVH21 ------>ZmHOX2a(1)        <---------YAB1<   tcagcgttgttatggtacttagttggattcactacttatggtctcggtgagacgtataagttcctacaaacacaagtggtctgtgattttcattatatac  17938900         <---------ANAC58         <---------ANAC58         <---------ANAC55(2)         <---------ANAC55(1)     --------->YAB1                                                                          <------- <---------YAB1                                                                  <---------HSFC1(1) <---------AHL20(2)                                                        <---------YAB1    <------- --------->AHL20(2)        --------->At4g35610                         --------->ARR11(3)    <------- -------->AHL20(2)       ------>ZmHOX2a(2)                             <---------ARR11(3)   --------- --TEIL<-----------GT1  <---------At4g35610                      --------->ANAC58--------->HSFB2a(2) -----GT1--------->ANAC55(2)  ---------->DOF2    <----------DOF2 --------->ANAC46--------->HSFC1(1) ---------AHL20(2) <----------DOF2 --------->GLK1(2)             --------->ANAC58<---------HSFB2a(2)   attttaattatacgtgttgttctttgatctgctaaagaatttgttcaaactcttttgtttcaagtacaaggaacatcttgattctagaaaacaatgcttg  17939000                                                               --------->ANAC58                                                           <------MYB46(1)                                --------->CCA1(2)          <------MYB83                               --------->ARR11(3)         --------->ALFIN1              <---------At4g35610               --------->GLK1(1) ---------->DOF2      --------->MYB46(3)       --------->ARR14(2)      --------->MYB55(2)                         <-- --ANAC46     --------->At4g35610             <------ZmHOX2a(1)--------->ANAC58           <------ZmHOX2a(2) --ANAC58    ------->TEIL      <---------ARR14(2)      <---------MYB46(3)                --------->ARR11(3) --ANAC58  ---------->DOF2     --------->ARR11(1)    <---------LBD16                     <---------ARR11(3) >ATHB12  <---------ATHB12------->GAMYB   <<<<<<<<<MYB98  <---------AtMYB61          ---------->DOF2-   gaaatgaaaccaatgaagctgaatacaacgaaagatttggatgggttaggatttcgacgggtggtatgcaaaggcattttcgatgagcaaagatcgatct  17939100  Previous    Next  AGI:  At1g48500.1    Description:  JAZ4/TIFY6A (JASMONATE-ZIM-DOMAIN PROTEIN 4). Identical to Protein TIFY 6A (TIFY6A) [Arabidopsis Thaliana] (GB:Q58G47;GB:Q9LP75); similar to JAI3/JAZ3/TIFY6B (JASMONATE-ZIM-DOMAIN PROTEIN 3) [Arabidopsis thaliana] (TAIR:AT3G17860.1); similar to hypothetical protein [Solanum tuberosum] (GB:BAD04851.1); contains InterPro domain ZIM (InterPro:IPR010399) Range:  from: 17935144    to: 17938330    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g48510.1    Description:  cytochrome c oxidase assembly protein surfeit-related. similar to SURF1 (SURFEIT 1) [Arabidopsis thaliana] (TAIR:AT3G17910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68221.1); contains InterPro domain Surfeit locus 1 (InterPro:IPR002994) Range:  from: 17938557    to: 17940583    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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