Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             --------->ARR11(3)                       -                                               --------->LBD16                                   ----                             ---------->DOF2  <---------LBD16     ----------->GT1            -------- ----->TOE1(3)            --------->YAB1     <---------LBD16<------ZmHOX2a(2)                -------- ----->TOE2(3)   --------->WOX13(1)      <---------ATHB12  <---------ARR11(3)             --------->TOE2(3)   tttaaacgagaaaaaccatcaatctctataaaaaagaaggccattcatccgggatggctacgatctataggttaattcttatctaaaaaaaacattaatc  17934700           <------------ATHB5                                                                     <--           <---------ICU4            --------->ANAC58                                            ----          --------->ICU4             --------->ANAC58                                        <-------          <---------ATHB12       --------->ANAC58                                 <---------ARR11(3)      <---------ATHB12           --------->ANAC58                             ---------->DOF2-------- -------->YAB1                 ---------->DOF2                             --------->At5g28300   <--- ------>DOF2           <---------AtLEC2                                  <---------DEAR3(1)  ------->GAMYB ->YAB1   <---------ATHB51<---------WRKY18(1)                    ------>ZmHOX2a(2)--------->ARR11(3) ->WOX13(1)--------->YAB1----------->HVH21          <---------AtLEC2  ----------->HVH21     ---------   aaagataaatcaataatgaggcactgcatgacccaaagcaagaattcaaactttgtatgaagagggatcgagacgacggtgaaagctcttctcaaccaca  17934800                                                       --------->ATHB12                                                       --------->ATHB51                                                       -------->HAHB4                              <-                                                       <---------ICU4                            ----                                                       <--------ATHB1                            <---                                                      --------->ICU4                           ------                                                      <---------AHL20(2)                      <------ <-----------GT1                                      <---------ATHB12                       <------- -------ICU4                                          --------->AHL20(2)                     -------- ----->ICU4                                 --------->ZAT18                                  <------- --ALFIN1                                   --------->ZAT14                                 --------- --->RAV1(1)    <---------ANAC46            <---------ZAT18          <-----------GT1       <---------YAB1 ------YAB1   <---------ANAC46              <---------ZAT14      <----------DOF2        <---------YAB1 >MYB46(3) <-----------RAV1(1)     <---------ATHB12   <---------ATHB51          --------->MYB52(1) <-   ttattaccatgttttgttgtgtagaatgaatgagtcaatgactcaatgcactacaaataattgctctcttttaacttgagaataagggttcttattataa  17934900                                                                                    --------->AHL20(2)                                                                                    <---------AHL20(2) --------ANAC58                                                                 <---------AHL20(2) ----->ICU4                  ----------->GT1                                   --------->AHL20(1) ------YAB1           --------->AHL20(2)                                       <---------AHL20(1) --->YAB1 --------->AHL20(2)<---------TOE2(3)                          --------->AHL20(1) ---YAB1<----------DOF2--------->AHL20(2)                              <---------AHL20(1) --AHL20(2)           <---------AHL20(2)                   --------->ANAC46 <---------AHL20(2) ->AHL20(2)         --------->YAB1         <---------AHL20(2)       --------->AHL20(2) --AHL20(1)       <---------AHL20(2)     <---------YAB1  <-----------GT1<---------AHL20(2) >YAB1--------->At4g35610 <---------AHL20(2)  <---------TOE2(3)     <---------AHL20(2)<---------CCA1(2) --------ANAC58   --------->AHL20(2) --------->TOE2(3)   --------->MYB52(1) --------->AHL20(2)   tgcttatcagctttaaatataaaaataaataatgtaaaacattattttaagtttgatattaacgacatatttatatatttatatatttatatccaagttg  17935000                                                                                  --------->TOE1(2)                                                                                 --------->O2                                                                                 <---------ANAC46                                                                                 <---------ANAC58                                                                <---------ANAC55(2)                                                                --------->HSFB2a(2)                           <---------ARR14(2)                   <---------HSFB2a(2)                           --------->ARR14(2)                   --------->ANAC46 <---------ANAC58                    <---------AHL20(2)                          --------->ANAC55(2)--------->ALFIN1                   <---------AHL20(1)                          ----------------->AGL1   --------->GLK1(1)                  <---------AHL20(2)         <---------------AGL15               <---------O2                --------->AHL20(2)           --------------->AGL15               <---------TGA1a               <---------AHL20(1)           ----------------->AGL3          <---------At4g35610               --------->AHL20(1)   <---------WOX13(1)         <-----------------AGL1   --------->CCA1(2)              --------->AHL20(2)  --------->ATHB12             <---------LBD16   --------->TGA1a          <---------AHL20(2)     <---------ATHB12           --------->KAN4(2)    <---------bZIP60(2)          --------->AHL20(2)     <---------YAB1  <------------CBF--------->LBD16<--------------------        --------->YAB1    <---------CCA1(2) <-----------------AGL1          --------->At4g35610      --------->AHL20(2)<---------AHL20(2)  <-----------------AGL3       ==================bZIP_DOF     --------->YAB1--------->AHL20(1)       ----------------->AGL2       ---------->DOF2<----------TaMYB80    --------->AHL20(2)  --------->AHL20(2)  <-----------------AGL2      <------ZmHOX2a(1)     -------   ttcaaaataaaaataaatatatatatttatatccgatgattgaatttctaatattggaagtttattccggaacaggaaagcagacgtgggatatacacat  17935100                                                                  --------->ALFIN1                        --------->AHL20(2)                      <---------ANAC46                      --------->AHL20(2)       <------ZmHOX2a(1)--------->ALFIN1                      <---------AHL20(2) <---------YAB1        <------NtERF2  --------->At4g35610                   <---------AHL20(2)   --------->TOE2(3)     <---------MYB46(3)        <-----------GT1             --------->AHL20(2)        --------->ATHB12       <---------DEAR3(2)------->GAMYB         --------->ATHB12 --------->AHL20(2)*TSS   --------->YAB1 <---------ANAC46 --------->ANAC55(2) ---TaNAC69(2)     --------->AHL20(2)  <---------ICU4        <---------DEAR3(1)<---------MYB52(2) -->ANAC46   <---------AHL20(2)     --------->ANAC46        <---------ABI4(1) <---------At4g35610   accgcatcggatgatttatattaaaaaaatatatgtatacatcattagaggaatcataaatcggcggtgtgtgtaacttcaactcacgtttttcatttct  17935200                                                                                ---------->DOF2                                                                              --------->ANAC46                                                                             --------->LBD16                                                                <---------AHL20(2)                                                       <---------At4g35610   ------>NtERF2              <---------ICU4            <---------CCA1(2)----------->HVH21  --------->ANAC46        ------>ZmHOX2a(1)         ------>ZmHOX2a(2)    --------->LBD16      --------->LBD16        =================================HOX2a_HOX2a   --------->At4g35610 <---------LBD16 ---------->DOF2 <-----------GT1 --------->GLK1(1)   <---------LBD16<-----------GT1         <--------   ctccaaagtccttcaattgttactaattctctctgatctctcatttcttctcttctccggtgacattttttttctcccccgcgaaagctaaaccgttttt  17935300                                                                                               <-----                                                                                            ---------                                                 <------ZmHOX2a(2)                          <--------                                          <---------ZAT2                              <---------TOE2(3)                                          --------->ZAT2                             --------->MYB52(1)                                       <---------LBD16                         <------ZmHOX2a(1)<----                --------->ANAC58      <---------LBD16                         ----------->GT1--------                --------->ANAC58--------->ARR11(3)              <---------MYB52(1) <---------MYB52(2)            --------->YAB1      <---------GLK1(2)==================================HOX2a_HOX2a<------        --------->ATHB12        <---------ARR11(3) ---------->DOF2          <------ZmHOX2a(1)-------- -MYB52(1)<---------WOX13(1)   <---------RVE1(1) =====================================HOX2a_HOX2a----   gtattctcaacgattgataagcctgatggagagagattttctcgggctgggatcaaagttatctccgataactgtgaaggaggaaactaacgaagattca  17935400                                   ----------------------->TaNAC69(2)                                  --------->ATHB12                             ------>ZmHOX2a(2) ------RAV1(2)             --------->ARR11(3) >ARR14(2)                 <---------ARR11(3) -ARR14(2)               <---------YAB1               <---------DAG2 -----TOE2(3)          --------->YAB1                 <----------DOF2 ->CCA1(2)             <---------ICU4         <XXXXXXXXXXXXXXXXXXXXMIR1886.1 -TEIL        <---------ARR11(3) <---------YAB1 <---------At4g35610--------------->AGL15 ->GLK1(2)    --------->ARR11(3) --------->ICU4 --------->At4g35610================================== ----->ANAC55(2)      --------->ICU4        <-----------GT1     <-----------GT1   <----------DOF2   <   ggtaattcatcttcaacatcttccattatgatctgatgattgtgtttttcatctcacttttttttgtttctatttttgtaatctctttttttgtttattg  17935500                                                                             ---------->ID1                         <---------ANAC58                                <-----------GT1          --------->AHL20(1)                                      <---------ARR11(3)             ----          --------->ARR11(3)  <---------WOX13(1)                --------->ANAC58             --------          <---------AHL20(1)--------->ATHB12                    --------->ANAC58       <---------HSFB2a(2)    <-------TEIL   <-----------GT1      ------>ZmHOX2a(1)<---------------AGL15         --------->HSFB2a(2) ========================================================================MADS_MADS    <---------LBD16 ---------------AtSPL8   <---------ANAC58                --------------->AGL15       <---------LBD16   ttcaagtacatatatattgtttttctagcttgattgggagtcctactgtctggttttttcttgaacaagaaattttttcttcgttttctcgggaagagaa  17935600  Previous    Next  AGI:  At1g48500.1    Description:  JAZ4/TIFY6A (JASMONATE-ZIM-DOMAIN PROTEIN 4). Identical to Protein TIFY 6A (TIFY6A) [Arabidopsis Thaliana] (GB:Q58G47;GB:Q9LP75); similar to JAI3/JAZ3/TIFY6B (JASMONATE-ZIM-DOMAIN PROTEIN 3) [Arabidopsis thaliana] (TAIR:AT3G17860.1); similar to hypothetical protein [Solanum tuberosum] (GB:BAD04851.1); contains InterPro domain ZIM (InterPro:IPR010399) Range:  from: 17935144    to: 17938330    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version