Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <---------MYB59                                                                     ------>ZmHOX2a(1)                                                                  <------ZmHOX2a(2)                      <--------P                                  <<<<<<<<<ARR2                      <---------WOX13(1)                          <<<<<<<<<ARR1          <---------DAG2     <---------ANAC55(2)               --------->HSFB2a(1) ------->GT1        <---------MYB46(3)                    <---------HSFB2a(2)                     <-- --AHL20(2)   <---------TOE2(3)      --------->YAB1       --------->HSFB2a(2)                 <------ >ICU4    <----------DOF2    ----------->GT1  <---------ANAC46 <---------HSFB2a(1)            -------   tgtattaagtcactttaagaattggttgatcatgtgaaatgagaattggctggaaatgttatagaacgatcctacttaacttcagtatttgatgagattt  17917000                                                                ----------->RAV1(1)                                                        --------->ANAC58                                                        --------->ANAC55(2)        --------->GLK1(2)                               --------->ANAC46                         <--- -------YAB1                                      ----------->RAV1(1)                  <---------ZAT2 ---GLK1(1)                ---------->DOF2     --------->YAB1--------->ZAT6            <---------At4g35610 -->GLK1(1)   ----------->HVH21        ----------->GT1  --------->ANAC58               --------->ZAT2   cttattggagactcttgtgaccccttctctaaagtttcaatgtgtgaaatcacaacataagtaacacaacaatagatgggtctggtctcagcttgtgttt  17917100                                                 --------->CCA1(2)                                                --------->ARR14(2)                 ==================                                          --------->ALFIN1                         <---------ANAC58                                         <-------MYC2                              <---------bZIP60(2)                                         ------->MYC3                              --------->bZIP60(1)                                         ------->MYC4                              <---------bZIP60(1)                                         <-------MYC4                              <---------ANAC58                                         ------->PIF5                              --------->O2                                         ------->MYC2                              <---------O2                                         <-------PIF5                              <---------ANAC46                                         <-------MYC3                              --------->TGA1a                                        --------->PIF3(3)                          <---------TGA1a                                        =========================================bZIP_DOF                                        <---------PIF3(3)                          <---------ANAC55(2)                                        <---------TGA1a                            <---------ANAC55(1)                                        --------->TGA1a         <------MYB83       --------->ANAC55(2)            ----------->RAV1(1)         --------->O2            <------MYB46(1)   ----------->STF1         --------->ANAC58       <---------ANAC58--------->ARR11(3)              ----------->TGA1         --------->ANAC58       <---------ANAC58<---------ARR14(2)              ----------->HVH21   <----------DOF2      <---------At4g35610     <---------ARR11(3)            --------->ALFIN1   ------>ZmHOX2a(1)    --------->At4g35610    <---------HSFB2a(1)    <----------DOF2   ===============================================bZIP_DOF   <---------MYB52(1)<-----------HVH21   -- ------AtMYB61         --------->GLK1(2)<---------O2     ------>NtERF2=======================bZIP_DOF   tggtcctttgtatgcaacaatagagaagctgaatgcttatccacgtggaagatttgtgcctccgataggtgtctttaacagtgtgacgtgtctgtattgt  17917200                                <---------GLK1(2)                           --------->ATHB12                                       <---------AHL20(2)                        <---------ANAC58                                     <-------GAMYB                        <---------ANAC46  --------->AHL20(1)                <---------MYB46(3)            <-----------HVH21<---------WOX13(1)           <----------DOF2   ----------->GT1        ------->TEIL    <---------ANAC58  <---------AHL20(1)               <---------YAB1        --------->GLK1(2)<---------WOX13(1)          ---------->DOF2    ----------->HVH21         ---   --------->YAB1     --------->WRKY38(1) <---------AHL20(2)          <---------ANAC55(2)  <---------ANAC55(2) <---------WOX13(1)  <---------MYB52(1)   --------->AHL20(2)          --------->ANAC55(2)  --------->ANAC55(2) ===========================MYC_MYB      <---------AHL20(2)     <---------YAB1   <---------YAB1  ---- ------->ATHB12     <-------GAMYB        --------->AHL20(2)    <-----------GT1<---------YAB1     <---   ttcattgatgaatctgttacaccgttgagtgattgattctcaaataaattggtcccaaagctttttatcaatatgtgatggttattaatggatacttaat  17917300                                                     ------>ZmHOX2a(2)                                                    <------ZmHOX2a(2)                                                    --------->GLK1(1)                                                   <---------ARR11(3)                                                   --------->ARR14(2)                                                   <---------ARR14(2)                                                   <---------AGP1                                                   --------->ARR11(3)          *TSS           <-----------GT1 <---------YAB1         <------ZmHOX2a(1)           <---------AHL20(2)           <---------YAB1 <------------CBF <---------AHL20(2)                 --------->AHL20(2)         --------->YAB1 --------->ICU4     --------->AHL20(2)                --------->YAB1 ------->DOF2           <---------YAB1     --------->AHL20(1)               ----------->TBP ----->AHL20(2)    --------->MYB52(1)      <---------AHL20(1)             <---------HSFB2a(2)       < ------AHL20(2)  <---------ATHB12     ------------>CBF                    --------->HSFB2a(2)      --   aaaagatgccattatactaatcaacgattattgttgagaaaacaataaaataggatctcaagagaaatagccgcttctataaaaatagtgagagtgactg  17917400                                                           ================================HOX2a_HOX2a                                                           =================HOX2a_HOX2a                                                    <---------TGA2(1)                                                    <---------TGA1a <---------GLK1(1)                                                    --------->TGA2(1)------>ZmHOX2a(2)                                                    <---------ANAC58<------ZmHOX2a(2)                                                    --------->TGA1a--------->AGP1                                                    <---------bZIP60(2)                                                    <---------ANAC58--------->GLK1(1)                                                    <---------bZIP60(1)                                                    --------->bZIP60(1)                                                    <---------O2   --------->ARR14(3)                                                    --------->O2   <---------ARR11(3)                                                   ----------->STF1<---------AGP1                                                 ----------->TGA1  --------->ARR11(3)                                               --------->YAB1      --------->ARR14(2)                                      <---------HSFB2a(2)  ================HOX2a_HOX2a                                      --------->HSFB2a(2)  ------>ZmHOX2a(1)      <---------ARR11(3)            ------>MYB46(1)        ===========================bZIP_DOF        --------->TOE2(3)  ----            ------>MYB83           <----------DOF2<---------TGA2(2)<---------ARR14(2)--------->WOX13(1)         --------->MYB46(3)  =================================bZIP_DOF   ==================HOX2a_HOX2a ------ZmHOX2a(2)            <----------DOF2   <---------ICU4     <---------CCA1(2) ------>ZmHOX2a(2) ------->ARR11(3)     --------->YAB1 <---------LBD16<---------ANAC55(2)  ------>ZmHOX2a(1)       ----   agatcaatagaaccaatctcagaatcatcttctttctctttcggaacaaaaatgacgtctcctctctcagatctcctaaaccttgatctatcagacacca  17917500                                                 <---------ANAC55(2)                                              ---------->ID1                            <-----------HVH21    --------->YAB1                      <----------DOF2                               ------->TEIL---    <---------ICU4                  <---------ICU4                                   <---------ANAC58  <-----------ARR10                 --------->YAB1                                   <---------ANAC58 ----->ANAC58                      <---------ATHB12                                  <---------AtLEC2 ----->ANAC58               <------ZmHOX2a(2)<-----------HVH21 ---------->DOF2      <-------TEIL <---   agaaaatcatcgctgaatacatatggttcgatccctaatcatctttttgtcacttaaatctatagaaaagtctctctataactcgatgcatgtcatatag  17917600                                                                                       --------->HSFB2a(2)                                                                                       <---------HSFB2a(2)                                                                                      <---------LBD16                                                                                   <------NtERF2                          <---------AtLEC2                                        ------>NtERF2                          <---------ANAC58                                        <---------MYB46(3)                      ------>ZmHOX2a(2)                                           --------->ABI4(2)                    --------->ARR11(3)                                           <---------DEAR3(1)                    <---------ARR11(3)                                        <---------MYB46(3)              ===============================bZIP_DOF                         ------>ZmHOX2a(2)              <---------TGA1a         <-----------GT1                         <---------DEAR3(1)        <-----------GT1   <---------ANAC58                                  <---------ARR14(2) ------>GLK1(2)----------------------->TaNAC69(2)                          <------ZmHOX2a(1) -------- ------GLK1(2)--------->TGA1a     <----------DOF2         <---------MYB52(1)--------->ARR14(2)   attcttgatgttacacacttgtgatcttgcatgtctctttaaacaacattgttttgttctgttttttcatgagaacaggatcggtggctctggaatggat  17917700                    -------->HAHB4                    <---------ICU4              ----------->GT1           <-----------RAV1(2)                               ------>MYB46(1)      <---------MYB46(3)        --------->ANAC58                                     ------>MYB83       <---------MYB52(1)      ---------->DOF2                                      <---------MYB59    <---------YAB1   --------->ANAC58 --------->YAB1                      <-----------GT1    --------->GLK1(2)   --------->ANAC58--------->ICU4                    --------->YAB1    --------->AHL20(2) --->GT1--------->ANAC58                            <---------YAB1     <---------AHL20(2)   attagaagcaaagccagggtaataataccatcacattatgtctctctagtttctataataaccaaacaaaaatttaaattctgtttgttaatagacatta  17917800                                                                        <---------At4g35610                                                                      <------NtERF2                                                                     --------->LBD16                                                               --------->At4g35610                                                               <---------At4g35610                                                               --------->ZAT2                       --------->HSFC1(2)                   ---------->DOF2                       <---------HSFC1(2)                  <---------ATHB12        --------->bZIP60(1)                       --------->HSFB2a(1)              --------->DEAR3(1)<---------YAB1                 ----------->RAV1(1)           <---------AGP1  <---------ZAT2    <---------ZAT14         --------->ANAC55(2)                   <---------ARR14(2)   <---------ANAC46         --------->ANAC58                      --------->ARR14(2)  <---------LBD16 <---------bZIP60(1)         --------->ANAC58  ----------------->AGL1------>ZmHOX2a(2)--------->MYB52(1)       <---------         <---------ANAC55(2)--------->HSFB2a(2)------->TEIL<------ZmHOX2a(2)     <---------ZAT18 <------ZmHOX2a(1)  ---------->DOF2            --------->ARR11(3) ------>NtERF2  --------->ZAT14   ccaggaccagtaagtaatccaacaaagcttccaaaatggaactacgatggatctagcaccgatcaagctgccggagatgatagtgaagtcattctttagt  17917900  Previous    Next  AGI:  At1g48460.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G63040.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G63040.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61244.1) Range:  from: 17915014    to: 17916968    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g48470.1    Description:  GLN1;5 (GLUTAMINE SYNTHETASE 1;5); glutamate-ammonia ligase. Identical to Glutamine synthetase cytosolic isozyme 1-5 (GLN1-5) [Arabidopsis Thaliana] (GB:Q8GXW5;GB:Q8LEA1;GB:Q9LP78); similar to ATGSKB6 (Arabidopsis thaliana glutamine synthase clone KB6), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT3G17820.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44738.1); similar to glutamine synthetase [Hevea brasiliensis] (GB:AAB61597.1); contains InterPro domain Glutamine synthetase, beta-Grasp; (InterPro:IPR008147); contains InterPro domain Glutamine synthetase, catalytic region; (InterPro:IPR008146); contains InterPro do Range:  from: 17917379    to: 17919766    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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