Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        <---------ARR11(3)        <---------At4g35610                            <-----                    --------->At5g28300         --------->At4g35610              <---------CCA1(2)  ----------->GT1<---------LBD16                <---------ZAT2                 <---------AtLEC2------ -------GAMYB <----------DOF2                   --------->ZAT2            <----------DOF2 --------->ALFIN1   tgcgttgtaatatgtgcttcgcggtatctttctccaagtttgcagtaacgagctgcgagactaagtcttcaatgttcttttgcatatcacaagtggagac  17888900                                                        --------->ATHB12                                                        --------->YAB1                                                       <---------YAB1                    --------->ATHB12                   <---------GLK1(2)            <---------ARR14(2)                <---------TOE1(3)            <----------ID1                      --------->ARR14(2)        <---------ANAC46         ---------->DOF2                 --------->TGA2(1)                <---------ANAC58    <---------MYB46(3)                   <---------TGA2(1)                <---------ANAC58 <---------WOX13(1) ----HSFC1(2)      <---------ARR11(3)    <---------bZIP60(1)        <------ZmHOX2a(1)   <---------YAB1 --->HSFC1(2)<------ZmHOX2a(1)           --------->bZIP60(1)    --------->ICU4    <---------TOE2(3)   ttccatctgttgaaaggacaagatgctctctacttcagaagtgatgtcagtatcggtatcattgtcatgaggaatgacttgtttagggttttgattgaaa  17889000                               ==========================HOX2a_HOX2a                               ------>ZmHOX2a(2)                              ===========================HOX2a_HOX2a                              <------ZmHOX2a(2)                             --------->AGP1                             --------->ARR14(3)                             --------->ARR14(2)                   ------->GAMYB                  --------->MYB46(3)                <---------ARR14(2)             <---------bZIP60(1)             --------->bZIP60(1)             <---------ANAC46<---------ARR14(2)             <---------ANAC58<---------ARR11(3)                                   <-------MYC2             --------->ANAC55(2)                                                  <-------MYC3             <---------ANAC58<---------ARR14(3)                 ----------->GT1   ------->MYC2             <---------ANAC55(2)                          <----------DOF2         ------->MYC3            <-----------------------TaNAC69(2)           <---------ANAC58      <---------ALFIN1    <-          --------->ALFIN1   --------->ARR11(3)          <---------ANAC58     <---------At4g35610<---        --------->ALFIN1    <---------GLK1(1)     <------ZmHOX2a(1)  <-----------GT1           <-----   cggtccaagagagtggcgtaaccatcgtagagatcttgacagagtgagagaaggagagggcttctctggtaaaaccattcagcacgttgagaaaatgttt  17889100                                                                   --------->ARR14(2)                                    <---------ANAC46     ------>ZmHOX2a(2)                                    <---------ANAC58    --------->CCA1(2)                                    <---------ANAC58    <------ZmHOX2a(2)           <---------YAB1       <----------DOF2        <---------AGP1   --------->MYB46(3)      <------MYB83            --------->LBD16          --------->AGP1 <-----------GT1      <------MYB46(1)        --------->ANAC58          --------->ARR14(3)     <---------AtMYB61       --------->ANAC58          --------->ARR14(2)     --------->MYB59     --------->GLK1(1)             <---------ARR14(3)   <---------MYB52(1)    <---------GLK1(1)             <---------ARR11(3)  ------>MYB46(1)  --------- --------LBD16          ----------->ARR10              --------->ARR11(3)  ------>MYB83     --------- --------GT1        --------->At4g35610                <---------ARR14(2) ----------->RAV1(1) ------HVH21--------->YAB1  <---------LBD16  --------->LBD16       <---------ARR14(2) ---------->DOF2   caccggtttggttatcatcaagagcagagacccgcattacttgcatccgagactcaagatctgtgtccatattcaccaacatatcaaacaaagtaagcac  17889200                                                                                               <-----                                         --------->CCA1(2)                                    <------                                  --------->LBD16                                             <------                                 <---------ANAC46                                         <----------                                <---------LBD16                                         --------->ETT(2)                               --------->MYB52(1)                                       <---------ETT(2)                               ------->TEIL                                       --------->GLK1(2)                             <---------ZAT14                <------ZmHOX2a(1)    <---------GLK1(2) >ANAC58                     --------->ZAT14    --------->At4g35610              --------->ARR14(2)<- >ANAC58                     --------->ZAT18    <---------At4g35610              <---------ARR14(2)<-   aaaaacaatatacaaagtttgaatttttaagtgtaccggagagagatggcaactgtggaagaggagactgagaggcatccatggattctgtcgattgctt  17889300                                            <---------ATHB12                               --------->MYB52(1) <---------MYB46(3)      <-----------------AG--------->YAB1 -----DOF2               ----------------->AGL1 ---ANAC58               ===========================================================MADS_MADS ---ANAC58          <---------ARR14(2)  ------------>CBF                             ---------->DOF2 --CBF   --------->CCA1(2)<---------------AGL15                                  ---------->DOF2 --------ANAC58     --------->ARR14(2)<---------At4g35610                    <----------ID1   ------- --------ANAC58     --------->GLK1(2) --------->At4g35610           --------------->AGL15     -------   tgctggttaagagatggaagagaaactgccaaacaagggaagctcaatgaaaattcaaaaaccccattttcaaattatagggaaaaagaaaggcaaacgc  17889400                                                                               <-----------HVH21                                                                     --------->ARR14(2)                                                                     <---------ARR14(2)                                                                    --------->RVE1(1)                               --------->AHL20(2)                   --------->GLK1(1)                              <---------ATHB12       --------->TOE2(3)  --------->ANAC46                              --------->ICU4         --------->YAB1 <---------GLK1(1)                            --------->WOX13(1)       --------->TOE1(3)  <---------ETT(1)                          ------------>CBF         <---------At5g28300  ----------->HVH21 -->ANAC58      <---------WOX13(1)     <----------DOF2             <---------ARR14(2)            ---- -->ANAC58     <------------CBF<---------AHL20(2) <-----------GT1  --------->ARR14(2)        --------   atgaaatcagtgagagagattgatatatggcaattaatgggctttgaagaatttaccataaatgctgcaaatatccgacagggtgagagaaactagaaag  17889500                                                               --------->ANAC58                                                               --------->ANAC46                                                <---------DAG2 --------->ANAC58                                                <----------DOF2--------->AtLEC2                                             --------------->AGL15                                <--                                             <---------------AGL15                                <--                           <---------AHL20(2)<---------ALFIN1 <---------LBD16                     <--          --------->At5g28300               <-----------------AGL2                            <------ ---------->DOF2          --------->AHL20(2)<-----------------AGL1                     ------->MYC3 ----->YAB1          <---------MYB59        <-----------------AG              --------->YAB1  <------ -->DOF2 ----------->GT1  <---------AHL20(2)----------------->AGL1    --------->TOE2(3)<-------MYC3   cataaaagaggcagtaaaatcagcctaatttaaaatttgtaaatgttccactttaggcattttccacgcaaacctctaaatcaaaaccacatgtttactt  17889600                                                                  ------>ZmHOX2a(2)                                                                <---------AGP1                                                                <---------ARR14(2)         <-----------RAV1(2)                                    --------->ARR14(2)       <-----------TGA1                                         <---------ARR11(3)      <---------bZIP60(1)                                      <---------CCA1(2)      --------->bZIP60(1)                                    --------->HSFB2a(2)                -----    <---------DOF5.7(2)                                      <---------HSFB2a(2)                <---- -------ANAC58                                               ------>ZmHOX2a(1)                 <----- -------ANAC58                                              <---------LBD16       ------>MYB83 ------ -------ANAC46         ------>ZmHOX2a(1)           <---------ARR11(3)             ------>MYB46(1)   < ---ANAC58   <---------ARR11(3)                   <------ZmHOX2a(1)             --------->TOE1(2)   - ---ANAC58  <------ZmHOX2a(1)     ---------->DOF2 =======================HOX2a_HOX2a          <------   gtgtgataacgtcaggattttagtcctgactacatataaagaattgtagtcaggattttagtcctggatctcaacgcttatacctacaatgtagtagtgt  17889700                      --------->ARR11(3)            <---------ARR11(3) ---->ALFIN1          <---------ARR11(3)            --------->ARR11(3) -----AtMYB61   --------->AtMYB61               ---------->DOF2 ----ZAT18      --------->TOE1(3)     --------->RVE1(1)                                          <--- --->ZAT14  --------->MYB46(3)       --------->GLK1(2)                      <------ZmHOX2a(2)    ---- ---------ETT(2)<---------MYB59      <---------ARR11(3)                   <------ZmHOX2a(1)      ---- -------->ETT(2)--------->TOE2(3)    --------->ARR11(3)           ---------->DOF2                <--- ---ANAC46--------->ANAC46          <---------GLK1(2)--------->CCA1(2)---------->DOF2         -------   ggtcgacaatacaaacaacctaaacatctctaaacacaaaatctcttgaataaagatttaagacgagttaaagaaaggatcaaagtctgttttgaataat  17889800  Previous    Next  AGI:  At1g48405.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17680.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67913.1); contains InterPro domain KIP1-like (InterPro:IPR011684) Range:  from: 17888313    to: 17889282    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g48410.1    Description:  AGO1 (ARGONAUTE 1). Identical to Protein argonaute (AGO1) [Arabidopsis Thaliana] (GB:O04379;GB:Q9LP83); similar to argonaute protein, putative / AGO, putative [Arabidopsis thaliana] (TAIR:AT2G27880.1); similar to ZLL (ZWILLE) [Arabidopsis thaliana] (TAIR:AT5G43810.1); similar to AGO1-1 [Nicotiana benthamiana] (GB:ABC61502.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63250.1); similar to AGO1-2 [Nicotiana benthamiana] (GB:ABC61503.1); contains InterPro domain Argonaute and Dicer protein, PAZ (InterPro:IPR003100); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro Range:  from: 17889766    to: 17896254    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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