Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             --------->CCA1(2)                          <---------ARR14(2)          --------->ANAC46                         <-----                          --------->ARR14(2)         --------->SPL7                            ------                      <---------LBD16              --------->TOE1(2)                         --------             --------->GLK1(2)                   <-------TEIL                              <---------          --------->ANAC55(2)               --------->DAG2                                <-------TEIL          <---------ANAC55(2)              ---------->DOF2                               --------->CCA1(2) -HSFB2a(2)  <---------ARR14(2)         --------->HSFB2a(2)        --------->MYB46(3) <---------TOE2(3) >HSFB2a(2)  --------->ARR14(2)         <---------HSFB2a(2)  ---------->DOF2          <---------YAB1   aattgaagagtcaagtatctgttcttcggatacaaaatcgttccaaaaagtttcatacgaccctaaagaaccacaattttcgaagattaagattcacagt  17882500                                           ----------->RAV1(2)                                       ------>ZmHOX2a(2)                                       =================================HOX2a_HOX2a                                       <---------MYB59                                      <------ZmHOX2a(2)                                      ==================================HOX2a_HOX2a                                     --------->ARR11(3)                                     <-----------ARR10                                     <---------ARR14(2)                                             -                                     --------->ARR14(2)                                          ====                                     <---------ARR11(3)                                          ---- ----ZAT14                          <------ZmHOX2a(1)            <------ZmHOX2a(1)              ===== --->ZAT14                        --------->MYB59               ----------->HVH21               <---- ->ZAT6                          --------->YAB1          <---------TOE2(3)                     ------ --GT1                        --------->WOX13(1)         <---------TOE1(3)     <--------P      <-----   actagtagcaatgcctcaacattgagaaacaccaattaggatctaacctgtgggaaattaaggtagaggacagggtttttggtagataatcgatcgagat  17882600            <---------ANAC46            <---------DEAR3(1)           --------->ATERF1(1)           <------NtERF2                                                             <---------DEAR3(2)           <---------LBD16                                                          <---------DEAR3(1)          <---------RAP2.3(1)                                                       <---------DREB2C(2)         <---------RAP2.3(2)                                                     <---------bZIP60(1)         <---------RAP2.6(2)                                          <---------GLK1(1)         <---------RRTF1(3)                                           --------->CCA1(2)         <---------DEAR3(1)                                          --------->ARR14(2)  <------NtERF2        <---------At4g35610                                    <---------At4g35610  <---------At1g77200        --------->At4g35610                                    --------->At4g35610 --------->DDF1    <---------MYB46(3)                                        <---------ANAC46   <-----------RAV1(1) -------->DEAR3(1)                                        <---------ANAC58 --------->LBD16 ===========================HOX2a_HOX2a                 <---------ARR14(2)<---------ANAC58 -->ZmHOX2a(2)       <------ZmHOX2a(1)                  --------->GLK1(2) <---------ANAC46 ===========================HOX2a_HOX2a           --------->DAG2   ----------->ARR10<---------DEAR4(1) --ZmHOX2a(2)     --------->CCA1(2)              ---------->DOF2<----------CDC5  --------->bZIP60(1) --->ARR14(2) <------NtERF2              <------ZmHOX2a(1)<---------ANAC58<---------ANAC58      <---- ----ARR11(3)--------->LBD16     <-----------RAV1(2)   <---------GLK1(2) <---------LBD16------>NtERF2   cgccgatggtagcggcggagataggagcgagaagaccagggaaggagaagagaaagcgattcttgcgctgagatttgcggatgatgtcggtgccatggtg  17882700               <---------TOE1(3)            <------NtERF2          <----------DOF2                  --------->LBD16         <---------ANAC58                 --------->DEAR3(1)         <---------ANAC58                <---------LBD16                             <-----------GT1   --------->ARR11(3)       <------ZmHOX2a(1)   --------->GLK1(2)                   <---------AHL20(2) -----MYB46(3) <---------TOE2(3)   --------->ARR11(3)                    <---------ZAT2        ------   tttgagaacttgctttgaaggtttgagagaggaatgagatttcgccggagaatcagagagcaattggttatcgagagctagggtttttaatctcttcctc  17882800                                         <----------DOF2     <---------SPL7                             <----------DOF2               --------------->AtSPL8                          =================HOX2a_HOX2a     --------------->AtSPL3                          ------>ZmHOX2a(1)                <---------------AtSPL3                     ---------->ID1   ------>ZmHOX2a(1) ------->TEIL          <---------At4g35610 >ZmHOX2a(1)     <----------DOF2    ------>ZmHOX2a(2) ---------->DOF2      <---------At4g35610   tgttttgactctgcgtcgtctttgtctcctccttttgatcctcctttcttcgacgatgaagctcgtaccattactgcttctgcttcttctactctctcta  17882900                          <---------ARR11(3)                          --------->ARR11(3)                     <---------AHL20(2)               <----------ID1                     --------->AHL20(2)             --------->DAG2        <---------YAB1                  <----------DOF2                   <---------------AtSPL8--------->ICU4          <---------HSFC1(2)            <-----------GT1         --------->YAB1          <---------HSFB2a(1)         --------->AHL20(2)       --------->AHL20(2)                  --          --------->HSFB2a(1)         *TSS<----------ID1     --------->YAB1                  >>>>>>>>          --------->HSFC1(2) <----------DOF2      ---------->DOF2<---------AHL20(2)  ---------->DOF2<   atttttcttcgaaaattcttcttttaaatgtctttgtcaatttaacaacaaaaaaaggcacaaaaataaaaatgtcatttttgaactcaaaggaagaaga  17883000                                                            --------->O2                                                            --------->ANAC58                                                            --------->ANAC58                                                            <---------O2                                                            --------->ANAC46                                                            --------->bZIP60(1)                                                            <---------bZIP60(1)                                                            --------->bZIP60(2)                                                            <---------TGA1a                                                            --------->TGA1a                                                            <---------ANAC55(2)                                                            --------->ANAC55(2)                                 =====================================bZIP_DOF       <----------DOF2           <----------DOF2            --------->ANAC55(1)     <------ZmHOX2a(2)           --------->TOE2(3)          ----------->GT1    ------->TEIL--------->MYB52(1)                          =========================================    <---------ARR14(2)         ------>MYB46(1)              =================bZIP_DOF  <----------ID1    <---------ARR11(3)         ------>MYB83                 ==================================bZIP_DOF    --------->ARR11(3)       ------->GAMYB              <-----------HVH21   <---------ANAC58  <------    --------->ARR14(2)       =========================================MYC_MYB          ----------->GT1   <---------ARR14(1)<---------GLK1(2)      --------->YAB1<-----------GT1   <---------ANAC58--------- ------->MYB52(1)    <------------CBF <---------ZAT6<-------TEIL  <----------DOF2<------ZmHOX2a(2) >TBF1------>ZmHOX2a(2)     --------->MYB46(3) --------->YAB1   --------->MYB52(2) ---------->DOF2 -- ---------------------WRI1<-----------GT1  <---------AHL20(2) <---------MYB52(1)<---------ARR11(3) --   acaacggatctttcaaaaaaacagattgtaaccaactttagtgatataatcatattcatgtcacgttactttcacattgcgagatcaaagcgaaaaaaga  17883100             ============================RAV                                   <---------ARR11(3)             <-----------RAV1(2)                                             --------->ANAC58 ==bZIP_DOF<-----------HVH21                                                 --------->ANAC58 ----ID1 --------->DAG2          <---------ZAT18                         --------->ANAC58 ->DOF2---------->DOF2       <-----------RAV1(1)   <---------LBD16       --------->ANAC58 ------->ANAC58--------->At4g35610             --------->GLK1(2)      --------->At4g35610 ------->ANAC58<---------At4g35610   <----------DOF2          <---------At4g35610          <---------YAB1   caaggaaggaaaaggtcagatgaattggatgttgttgcactttgatgagagtctggggagagtcagtagattagctcgcaagaactcattgttgttattg  17883200                 <----------DOF2               ------>MYB83                                                        ------->TEIL               ------>MYB46(1)                               ----------->RAV1(2)  --------->ARR14(2)       --------->REM1(2)                                     <---------At4g35610  <---------GLK1(2)    <---------ANAC58                             --------->ANAC58             ---------->DOF2    <---------ANAC46                             --------->ANAC46     <---------At4g35610         ---    <---------ANAC58                             --------->ANAC58     <---------ZAT2              <--   ttttctgcgtgaacaccaactttcacagtttcaagacgttccaacttgcccaagaaatgtctcatctgttccagctcttgaaaagaacctccatactctg  17883300                                                          --------->LBD16                                                         --------->ANAC46                                                        <---------LBD16                                                      <---------ARR14(2)                                                      --------->ARR14(2)                                                   <---------ANAC58                                                   <---------ANAC58                                                  <-------TEIL                                                <-------MYC2                                                ------->PIF5                                                <-------MYC4                                                ------->MYC2                                                <-------PIF5                                                ------->PIF4                  <---------ETT(2)           <----------DOF2                      <-------MYC3          <-----------GT1       <----------DOF2     <---------At4g35610  ------->MYC3     <---------ANAC58     ------>ZmHOX2a(1)  <---------At4g35610     <-------PIF4     <---------ANAC58 ------>GLK1(1)         ------>ZmHOX2a(1)  --------->ANAC58    <---------AHL20(2)        --------->LBD16 -------GLK1(1)   <---------ATHB12         --------->ANAC58 <----------DOF2   <---------ZAT18   aaatctcctctttctttccaatcttcctctgcttcttagggatgcaagcacatgcgtctccgcatttacttgttactctgtggacaaaaccctgaaacca  17883400  Previous    Next  AGI:  At1g48380.1    Description:  RHL1 (ROOT HAIRLESS 1). similar to unnamed protein product [Vitis vinifera] (GB:CAO39776.1) Range:  from: 17881081    to: 17882938    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g48390.1    Description:  syntaxin-related family protein. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G48400.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 17883116    to: 17884571    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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