Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           ------->MYC4                                                         ------->MYC3                                                         ------->PIF4                                                         <-------PIF4                                                         <-------MYC2                                                         <-------MYC3                                                         <-------MYC4                                                         ------->PIF5                                                         ------->MYC2                                                         <-------PIF5                                                        =====================================MYC_MYB                                                        --------->ANAC55(2)                                                        --------->ANAC58                                                        <---------TGA1a                                                        =================================MYC_MYB            <-------GAMYB                               --------->ANAC58           --------->MYB55(2)                           <---------ANAC55(2)           <---------MYB46(3)                           =============================================          <---------AtMYB61                             --------->TGA1a          <---------ANAC46                            <---------ALFIN1       --------->ALFIN1                           --------->At4g35610    -------->ZAP1                                 <---------At4g35610                      <---------   <---------At5g28300                         <---------At4g35610                 <---------MYB52(1)  <---------WRKY18(1)                          --------->ZAT2                    ------->GAMYB <----- --------->WRKY12                              <---------ZAT2<---------REM1(2)  <------------AtMYB77 ----------->HVH21                             --------->At4g35610              --------->MYB46(3) --------->WRKY38(1)                <---------TOE2(3)<---------At4g35610       <---------At5g28300  < --------->WRKY45           ------->TEIL      <-----------RAV1(1)             <-----------GT1  <-----   cctttgaccgtggtggttacccttaccatggacgtattgaggctcttgctgctgcagcacgtgaacacggtcttcagttttaaccgtcgttttctttcct  17871900        --------->At4g35610   <----------DOF2  <---------ANAC58  <---------ANAC58 =bZIP_DOF              <---------YAB1                                 <---------HSFB2a(2) -DOF2  <---------At4g35610------->TEIL                         --------->ARR11(3) ----ANAC58     --------->ZAT14                                 <---------ARR11(3) -----------GT1 --------->At4g35610                      --------->ICU4--------->HSFB2a(2) ----ANAC58     <---------ZAT14                --------->LBD16<---------TOE2(3)         --------->TOE2(3)   tgtttctttccgatgaacagcagtgtatgaatgtagagaacccattttccccaattgaaatgttgagatttttctataactattctacagcctaaaccaa  17872000                                                                                            ---------                                                                                           --------->HSFB2a(2)                                                                  <---------ZAT14          <---------HSFB2a(2)                                ---------->DOF2        <---------GLK1(1)                   <---------HSFC1(1)                       <---------ICU4                 <---------ARR11(3)     --------->ANAC58                      <---------ATHB12 --------->ZAT6 --------->ARR11(3)     --------->ANAC58                <-----------GT1 --------->ZAT14<-------TEIL       --------->ZAT14          --------->HSFC1(1)   ggccctgaacaaaacatttatccaaacatttcactaaagtatcactaggtgcataagaactctgcaacttcagtgaattaagcaagagtgtttccagaac  17872100                                                                                    <---------ATHB12                                                                                --------->MYB46(3)                                                     <---------AHL20(1)       <-----------GT1                                                     --------->AHL20(1)  <---------AHL20(2)                                      --------->ARR11(3)              <---------AHL20(1)                                      <---------ARR11(3)              --------->AHL20(1)                                      <---------GLK1(2) <<<<<<<<<<GT-3b<---------AHL20(2)                                  ---------->DOF2<---------AHL20(2)  <---------AHL20(2) --------->AHL20(2) >LBD16   ---------->DOF2      <----------DOF2  --------->AHL20(2) --------->AHL20(2)--------->YAB1   aactacaaatttcaaagaaacgtctctgaatcgctttaaagatttttgcatttaatatttttcttacatatatatatttttaaccaatgaaaaaatagag  17872200                                           --------->AHL20(2)                                     ------>NtERF2                          ---------->DOF2     >>>>>            <----------ID1          --------->DEAR3(1)              <----------ID1           --------          ---------->DOF2     <---------GLK1(1)   --------->YAB1 ---------->DOF2 --------->GLK1(2)--- --------->TOE1(3)       ---------->DOF2--------->AtMYB61    <-----------------AGL1  <---------ZAT14 --------->TOE2(3)--------->MYB52(1)<---------ETT(1)    ----------->GT1 ---------->DOF2    ----------   aaaccttgaacaaaaagacaaaacagaaaaagaattctccgaccaaaaaatatcaaaatggtaaaccaaaagggcaaagaaagaaactgtagcgccaatc  17872300                                                                       <---------ATERF1(1)                                                                       --------->LBD16                                                                       ------>NtERF2                                                                      --------->RAP2.3(3)                                                                      --------->ATERF1(2)                                                                      --------->DEAR3(1)                                                                      --------->RAP2.3(2)                                                                      <---------ATERF1(2)                                    --------->SPL7                    <---------DEAR3(1)                                   --------->MYB52(1)                <------NtERF2                  *TSS           --------->MYB46(3)                  --------->ERF1               <---------At4g35610<---------SPL7                     --------->DEAR4(2)          --------->ANAC46      <---------LBD16                      --------->ATERF1(1)          --------->bZIP60(2)   <---------At4g35610                  --------->RAP2.3(1)         --------->LBD16--------->GLK1(1)                            --------->ORA47(2)        --------->ANAC46<---------GLK1(1)                      ---------->DOF2      <---------At5g28300       --------->At4g35610        <---------WOX13(1)   --------->GLK1(1)   <---------ARR14(2)                 <---------ANAC46   <---------GLK1(1)   --------->ARR14(2)                --------->ATHB12                     -------  <---------ARR11(3) --------->ANAC58                    <---------MYB46(3)                 ------>NtERF2  --------->ARR11(3) --------->ANAC58                  <--------P    <---------LBD16       --------->DEAR3(1) >>>>RAP2.2<-----------HVH21   --------->MYB52(1)     <-------GAMYB <---------RAP2.3(1)    <---------ALFIN1 ->WOX13(1)<-----------TGA1   ------------------>SPL14<---------MYB52(1)<------NtERF2   --------->ANAC46 ------->DOF2  --------->At4g35610----------->HVH21  --------->LBD16<---------ATERF1(1) ------->GAMYB -->CBF<---------LBD16<------ZmHOX2a(1)            <---------LBD16<---------ABI4(2)    --------->MYB46(3)   taaagatttcccgcgtcatcggcaggaaatgctcaccggacgggagagtttgctccggttgattggaaagcgccggcgatttctccccaatcgccacctt  17872400                  <---------MYB52(1)                 --------->LBD16                                    ---------->DOF2       <<<<<<<<<CBP60g               <---------LBD16                            <---------ALFIN1      <----------DOF2------      --------->At4g35610                               --------->ANAC46        ------>ZmHOX2a(1)      <---------At4g35610                              --------->ANAC46        --------->TOE2(3) -------------->WRI1                      <-----------GT1--------->LBD16 <-----------GT1  <<<<<<<<<SARD1   cttctctccgctcatactccggtattaatcttttgccctcaaatttccctcattttccccccaattgtatcaaagtaacatcctttatcccaaatttcca  17872500                                                                <---------ANAC46                                                               ---------->ID1              <---------At4g35610                                                            <---------WOX13(1)             --------->At4g35610                                                          --------->ATHB12     ------>ZmHOX2a(2)                                                         <---------YAB1       <------ZmHOX2a(2)                                                         --------->ICU4      <---------ARR14(2)                                                     <------NtERF2           --------->GLK1(2)      --------->TOE2(3)           --------->WOX13(1)--------->LBD16          --------->ARR14(2)    --     ----------->GT1    --------->MYB46(3)        <---------LBD16     <---------YAB1     <-----------RAV1(2) --->ZAT6            <---------WRKY12    ---------->ID1<---------At4g35610  <------ZmHOX2a(1)--------   ctagaattcgttaaatctcgagttcaacgactatggcaatcttgtctcattagccggagatgattgtcgtttatcagaggatccgacttcttcagatgac  17872600                      <-----------GT1                <------MYB83                <------MYB46(1)               <---------MYB46(3)              <---------ANAC46                                                                     <-             <---------MYB52(1)                               <---------TOE2(3)                  <--- ------->LBD16<--------P           ---------->ID1        --------->ATHB12             --------->TOE2(3) --->HVH21 <-----------RAV1(1)   <-----------RAV1(1)   --------------->AGL15          xxxxxxxxxxxxxxx   ccgagtaaattctctggtgggttttaacaattgttttgttgtctatttgctcatcttcttcattagggattttgaagttaacaaattgcctcaaacttcc  17872700    --------->ATHB12 --------->At4g35610                                                    <-----------HVH21 <---------At4g35610         --------->MYB52(1)                      <---------ANAC46 ----------RAV1(2)          --------->ARR14(2)               --------->WRKY18(1) --------HVH21              <---------ARR14(2) --------->ZAT14       <---------ANAC58             --- x>smallRNA(i)          <------ZmHOX2a(1)      <---------ZAT18       <---------ANAC58    --------->YAB1   ttcagatgatttgagtttatccacgaggaagaaacggagattaactcagaccactcttcttcagtcaagtttcttgtcagtgccaaaacaattagaagat  17872800  Previous    Next  AGI:  At1g48350.1    Description:  ribosomal protein L18 family protein. Identical to 50S ribosomal protein L18, chloroplast precursor (RPL18) [Arabidopsis Thaliana] (GB:Q9SX68); similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G17626.1); similar to unknown [Populus trichocarpa] (GB:ABK95541.1); contains InterPro domain Ribosomal protein L18, bacterial; (InterPro:IPR004389); contains InterPro domain Ribosomal protein L18/L5; (InterPro:IPR005484) Range:  from: 17870872    to: 17872010    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g48360.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO45274.1); contains InterPro domain HIRAN (InterPro:IPR014905) Range:  from: 17872318    to: 17876699    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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