Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      <---------At4g35610                                                                    --------->ZAT2                                                                    --------->At4g35610                                                                    <---------ZAT2                                                                <-----------HVH21                                                               ===============================bZIP_DOF               ----------->GT1                                 --------->O2               --------->ATHB12              ============================bZIP_DOF   <---------ALFIN1                          <----------DOF2   <---------O2  --------->At4g35610                       <---------DAG2     <---------TGA1a -----ZmHOX2a(2)     <---------WOX13(1)--------->MYB46(3)      ===============================bZIP_DOF ------>ARR14(2)   --------->ATHB12    --------->DEAR3(1)      --------->TGA1a -------ARR11(3) <---------WOX13(1)    ----------->HVH21  --------->ANAC58                       ---- ------>ARR11(3) <--------P           <---------At4g35610 --------->ANAC58         ---------->DOF2---   gatcagcactcttcaaatggttgattgagagttgaattccagcgacccttttgaaaccagaagccatgtgagctcccatacttgctaaagactcggctat  17859000                     <---------ALFIN1                  ----------->HVH21           <---------ALFIN1           --------->AtMYB61          --------->MYB46(3)        --------->ANAC46                                          --------->GLK1(2)       <-------TEIL<-----------GT1                            --------->YAB1      --------->CCA1(2)                               --------->GLK1(2)                     ---------     <---------ARR14(2)                 ---------->DOF2  <----------DOF2         ---------->DOF2     --------->ARR14(2)     ---------->DOF2           --------->ARR11(3)  <--------P       <---------ATHB12 ----->YAB1--------->DEAR3(1)     <----------DOF2     <---------ARR11(3) <-------GAMYB     --------->ICU4 ------->DOF2 <---------ANAC46    <---------DAG2 ----------->GT1 <---------GLK1(2)--------->MYB52(1)   caaagcagatacaccaccgtgtaacaccttgaaaggctttttgaaaggaaattgaaaatctttatcagaatttggggttagaacaaagggccaatgatca  17859100                                                                  <---------ARR11(3)                                                               <------NtERF2                                                             --------->ETT(1)                                                           <-----------HVH21                                                          --------->ALFIN1                                                        <---------ANAC55(1)                                                        <---------O2                                                        --------->O2                           <---------TGA1a              <---------ANAC58                           --------->TGA1a              <---------ANAC58                        ----------->HVH21               <---------TGA1a                             -                      <---------At4g35610               <---------ANAC55(2)                       <--                      <---------ZAT2                    --------->ANAC55(2)                    ------                      --------->ZAT2                   <-------TEIL                      ------>MYB83                      <------NtERF2                ----------->HVH21                     ----------->RAV1(1)                      --------->At4g35610         <-----------HVH21                      ------>MYB46(1)               ----------->RAV1(2)           ------>NtERF2----------->HVH21           --------->ANAC58     >>>>>>>>>TBF1   ----------->RAV1(1)    ----------->HVH21<---------ANAC46         --------->ANAC58 >YAB1         ==================RAV   <------ZmHOX2a(1)<---------ANAC46         --------->ANAC46 <--   aattgaagaagaatgaaacctggcagcagacgggagaaacaggaaggcgacctgtgatacgtgtcggagataattcatcgaactcgaaacccaacatgtg  17859200                                                                                      <---------ANAC58                                                                                      <------MYB46(1)                                                                                      <---------ANAC46                                                                                      <---------ANAC58                                                                                      <------MYB83                                                                                     --------->MYB111(2)                                                                                     --------->MYB55(2)                                                                                  <---------ANAC58                                                                                  <---------ANAC46                                                                                  <---------ANAC58                                                                                 <------MYB83                                                                                 <------MYB46(1)                                                                               <--------P                                                                             <------MYB83 --------->ALFIN1                                                                             <------MYB46(1)                                                                            --------->MYB46(2)                                                    <-----------RAV1(1)     --------->MYB59                                                --------->ZAT14             --------->MYB111(1)   <---------ANAC46                             --------->ZAT18             --------->MYB111(2) -------->ALFIN1                    --------->ARR14(2)                     <---------MYB55(1)      <- -------bZIP60(2)   <-----------RAV1(1)         <---------ZAT14            <--------P<---------DEAR3(1) ----->HVH21     <---------AtMYB61  <---------ARR14(2)               --------->ALFIN1<---------MYB46(3) -------ANAC46 <----------DOF2      --------->GLK1(2)<-------GAMYB --------->CCA1(2)--------->ALFIN1   aagtggagggtctatagctttggtgttggacgatgcagaatccatttttgtgctctgttgcagagagagagatggaggtaggtagggtgggtgtgttaga  17859300                                                 <-----------HVH21                             ------                                               <---------TOE2(3)                           <---------ANAC58                                     <-------GAMYB   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------ANAC58                                    --------->MYB55(2)                                     <---------ANAC46                                    --------->MYB111(2)     <---------HSFC1(2)            <-------TEIL                                    --------->MYB111(1)     <---------HSFB2a(1)        <------MYB83                                    <---------MYB46(3)      --------->HSFB2a(1)       <---------AtMYB61                                    --------->MYB52(2)      --------->HSFC1(2)        <---------TOE1(2)                                    --------->MYB46(2)  ----------->GT1               <---------DEAR3(1)                                   <--------P <---------DOF5.7(2)                  <---------ANAC58                                 <---------MYB46(3)  <---------O2                  *TSS<------MYB46(1)                                <---------AtMYB61--------->TOE2(3)                 <---------ANAC58 --------YAB1                <---------AtMYB61--------->MYB52(1)                   <---------ANAC46   gatgataagagagtttgagaaatggattgaattggtggtagttgggattaacgtcaagtggaaatttcgatgaaatgggttttttgcgtaggtgcgtgaa  17859400                                                     <------MYB46(1)                                                     <---------MYB46(3)                           ---                                                     <------MYB83                            ------->MYC3                                                  <-------GAMYB                              <-------MYC3                                                 <---------ANAC58                           ---------                                                 <---------DEAR3(1)                         <--------                   <----------DOF2               <---------ANAC58                           =========                --------->ARR11(3)         <------------CBF                                 <--------         <---------WRKY18(1)              --------->ATHB51                                  ---------      <---------ANAC58                    --------->ATHB12                                 <<<<<<<<<<ABI5      <---------ANAC58                   <---------YAB1        ======================================      --------->ANAC55(2)                <---------AHL20(2)    <----------DOF2             <<<<<<<<<<BZIP12  --------->DOF5.7(2)                <---------DAG2 <---------AtMYB61   ---------->DOF2----------->HVH21 ---->DOF2      <---------ARR11(3)   <----------DOF2<---------DEAR3(1)  =============================   agacgtttacttgactgagaccttttatgtccaaaaacactttataattgggcgttggtgagagtctttcggaccaaagtcatatagttttgacacgttg  17859500 -------->TGA1                                                --------->TOE2(3) >TGA1a                  <----------ID1                     --------->MYB52(1) --------->YAB1      -- -TGA1a         <------MYB46(1)                  ==================================================== ========================================bZIP_DOF<---------------AGL15      ----------->GT1        -- -O2            <------MYB83 <------NtERF2  <---------At4g35610             --------->YAB1         <- >O2            ----------->GT1             --------->At4g35610  ---------->DOF2                <---- =bZIP_DOF     --------->MYB59---------->DOF2    ------>ZmHOX2a(1)---------->DOF2 <-----------GT1---- =bZIP_DOF   <---------MYB52(1)     ---------->DOF2       <XXXXXXXXXXXXXXXXXXXXXMIR771 <----------DOF2   gagacgttattgtcagtttggtttaataggccgaaagtgaaagttgagctcctctaatgggctaccgtaaaggcccattagtaataactctttttttttt  17859600          --------->MYB52(1)         <---------WRKY38(1)                            <---------ANAC55(2)         <---------ZAT14                                --------->ANAC55(2)         --------->ZAT14                            --------->MYB52(1)   --------->YAB1                                  ------->GAMYB                             --------  <---------YAB1   <---------TOE2(3)           --------->MYB46(3)                            <------- --------------->AGL1                  --------->MYB46(3)    --------->bZIP60(1)            --------- ==============MADS_MADS               <------------MYB.PH3(2)----------->RAV1(1) <----------DOF2 ------------->AGL15                   <---------MYB52(2) ----------->HVH21       --------->TOE2(3) --------------AGL15              ----------->GT1 <---------MYB52(2)           <-----------GT1 -------GT1     <--------P--------->ATHB12 <---------MYB52(2)<---------bZIP60(1)  --------->TOE1(3)<- ------>ID1   ----------->GT1 <---------LBD16--------->MYB52(1)  ------->GAMYB--------->AHL20(2)-----   tcccattatagtgaacgggttaatgaagtaattggggagtaacaaactaacaactaacaagtgacaacagaaaacaaaaattaactttaaaaaatgatat  17859700                                                         <---------ANAC55(2)                                                         --------->ANAC55(2)                                                    --------->YAB1                         <---------------AtSPL8     <---------ICU4                         --------->DAG2            <---------YAB1                        ---------->DOF2            --------->ICU4               --------->YAB1                     --------->YAB1              --------->YAB1                <---------YAB1                    --------->ICU4              <---------YAB1        <---------LBD16 ->ARR11(3)         <---------YAB1              --------->AHL20(2)  <---------REM1(2) --ARR11(3)       --------->YAB1                <---------AHL20(2)<---------ZAT18                <--- >YAB1    --------->CCA1(2)                    <---------AHL20(1) --------->ZAT14                ---- ---------DOF2   --------->ICU4    ------->TEIL--------->AHL20(1) <---------ZAT14          <--------- ---->GLK1(2)----------->GT1 <-------TEIL      --------->AHL20(2) --------->ZAT18      <----------DOF2   tctttgttgaagagatggaataataataaagtacatgtatgcgatgcaatataattatcaagtgatagtgtactcggagttatcatagactttaatccat  17859800              ------>MYB46(1)              ------>MYB83            <---------------AGL15            --------------->AGL15           --------->ANAC58           <------NtERF2           ----------------->AGL1           --------->ANAC58                                                                        <-           <-----------------AGL3                                                                 ---           <-----------------AGL1                                                                ----           ----------------->AGL2                                                                <---           ----------------->AGL3                                                            <-------           <-----------------AG                                                              --------      --------->ANAC46                                                                     --------->ANAC58      --------->ANAC58                                        <---------ARR14(2)           ---------- ------ARR14(2)                              --------->YAB1   --------->ARR14(2)           --------->ANAC55(2) ----->ARR14(2)                              ---------->DOF2 <------ZmHOX2a(1)             --------->ANAC58 --GT1--------->ANAC58           <---------GLK1(1)        <---------At4g35610              <---------ANAC55(2)   atactatcaaggcaccaaattgggcaactagttggctatctgaacaataaagagggtttcagaggattggattatgcaatagagtatcgaagtaagtaat  17859900  Previous    Next  AGI:  At1g48315.1    Description:  other RNA Range:  from: 17857785    to: 17859479    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g48320.1    Description:  thioesterase family protein. similar to thioesterase family protein [Arabidopsis thaliana] (TAIR:AT5G48950.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70944.1); contains InterPro domain Phenylacetic acid degradation-related protein (InterPro:IPR003736); contains InterPro domain Thioesterase superfamily (InterPro:IPR006683) Range:  from: 17858481    to: 17859383    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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