Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              <---------ZAT6                                                                            ----------->GT1                    --------->DEAR3(1)         <---------MYB46(3)          <------MYB46(1)                   --------->ATERF1(1)  <---------AHL20(2)                 <------MYB83 ---------ALFIN1   <------NtERF2       --------->AHL20(2)                <--------P ----->ZAT6       <---------At4g35610  <---------AHL20(2)               <---------SPL7 ------GT1    --------->HSFB2a(2)  <---------AHL20(2)                  <---------MYB46(3) -->GT1       <---------HSFB2a(2)  --------->AHL20(2) <-----------HVH21--------->MYB55(2) >YAB1       <---------LBD16<---------AtMYB61 <---------ANAC46        <---------AtMYB61 ->AGL1   <----------DOF2<---------ARR14(2)<-----------RAV1(1)     <---------MYB46(3)   <---------LBD16   caccacttcgacctttctggagccgaggttttggtttttaattttatggtgggcaaggtcacaagttgtctggtggtagggttatacattcgcggttttt  17831100                                                   <---------CCA1(2)                                              ------>NtERF2                                            <---------ANAC58                                            ---------->ARF1                                            <---------ANAC58                                        ------>ZmHOX2a(2)           ----------->RAV1(1)                                       <------ZmHOX2a(2)           --------->MYB46(3)                                      --------->AGP1            <---------WRKY38(1)                  --------->ANAC58    <---------AGP1            <---------WRKY12                  --------->ANAC58    <---------ARR14(2)        <---------WRKY45               <---------REM1(1)      --------->ARR14(2)       <<<<<<<<<<WRKY11             <---------At4g35610      --------->ARR11(3)       --------->WRKY18(1)             --------->At4g35610      <---------ARR14(3)       <<<<<<<<<<WRKY6           <-----------RAV1(2)        <-----------ARR10<---------LBD16 ---------->DOF2        <------          <---------At4g35610         --------->ARR14(3)     <------MYB83                    <-------      --------->ALFIN1                <---------ARR11(3)     <------MYB46(1)  <------ZmHOX2a(1)   ---   tcaaaaatgtgtagcagatgaagccactaagtttttgtaagatcttgcctcccctatctcggatggtcaacaacaaaggaggaagatggactagtagcgg  17831200        -------->HAHB4        --------->YAB1       <---------ATHB12       <---------YAB1                    ----------->GT1      <---------TOE2(3)             --------->ANAC46  <---------At4g35610              <---------HSFB2a(2) ---ANAC46   <------ZmHOX2a(1)     ------>ZmHOX2a(1)                                           ------ --LBD16--------->ATHB12           --------->HSFB2a(2)       <-------TEIL   --------->TOE2(3) ------- ------>ALFIN1              <---------MYB52(1)        ----------->GT1    <---------PCF2    ----------   atggagctaatgataggattttagagggacggtagtcctcgaaatgtgatacacaaatgtaaattcgttgagatgggaccttaatgaaacgactggtaaa  17831300                                                                                     --------->GLK1(2)                       <---------At4g35610                                --------->GLK1(2)                       --------->At4g35610   ------->TEIL                <---------GLK1(1)                     <---------WOX13(1)     <---------ALFIN1             <---------GLK1(2) <--------- --->DAG2         <---------YAB1          --------->ANAC58 <---------TOE1(3)        <---------GLK1(2) --->DOF2     <---------ANAC58            --------->ANAC58 <---------TOE2(3)  <---------ANAC55(2)  -- ->GT1        <---------ANAC58     <----------DOF2      <---------MYB52(1)<---------ARR14(2)    <----   gtatggactatggagagcgtatgatagatgaccagagctttgagacgcacttgaatccattagggttttaacagggaatctcgtaagaatctctgtcacc  17831400                                                                             <----------ID1                                                                  <-----------HVH21    <---------MYB52(1)                             <---------ALFIN1<---------MYB52(1)  <---------MYB46(3)                 <----------DOF2  <-----------RAV1(1)  ---------->DOF2 --HVH21<---------GLK1(2)       ---------->ID1    <---------ZAT14<---------ZAT6 ------->ARR14(2)     <---------ANAC58           >>>>>>>>>>>>>>>>>LFY   --------->ANAC46           -- -----ALFIN1          <---------ANAC58       <----------DOF2 <------ZmHOX2a(2)              *TSS  <--   acatccgttggaatctccagtagtgcttggcttcgtcttcttttcttctttctccactgttggatcactgttagacgaaaagacaaacccatctcaatcc  17831500                                                      ------>ZmHOX2a(2)                                                    <---------ARR11(3)                                                 --------->At5g28300            ------->TEIL   --------->LBD16                   ---------->DOF2--------->ARR11(3) <---------WOX13(1) ---->NtERF2                   <---------LBD16 <---------DEAR3(1)     <------------CBF         <----- -------ALFIN1      <---------MYB46(3)        <---------LBD16       <---------YAB1           ------>ZmHOX2a(1)   ccacccgagtttgaagacagagtcgttcagtcttggggagaaagaaatcgcggtgatctctagggttttgaagattgatacgaattttgtaattcctctt  17831600                --------->ANAC55(2)            <----------DOF2        --------->DEAR4(2)        <------NtERF2        --------->ATERF1(1)       ------>NtERF2       <---------RAP2.3(1)       <---------ERF1       <---------RAP2.6(1)       <---------RRTF1(1)       <---------ATERF1(1)      <---------RAP2.3(2)                <---------ANAC58      --------->DEAR3(1)                 --------->ANAC58      <---------DEAR3(1)                 <---------ANAC55(2)     --------->RAP2.3(1)                 --------->ANAC46                             <---------MYB52(1)     <---------ABI4(2)                   --------->ANAC55(2)                         --------->TOE2(3)     --------->ATERF1(1)                 --------->ANAC58                            <-------GAMYB    <---------RAP2.3(1)                  <---------ANAC58                 --------->GLK1(1)    <---------ATERF1(1)                  --------->ANAC55(1)             --------->ARR11(3)    <---------DEAR4(2)               <---------ANAC58                    <---------ARR11(3) --------->MYB52(1)                  <---------ANAC58            <---------ANAC58   ----------->GT1 -----DOF2<---------DEAR3(2)    <---------At4g35610              <---------ANAC58  <-------TEIL  <---   tagaaacggcgccggtttaagtgatagtattttcatatgacttacgtaacaaaactcttcaacattgtcgtccaagaactccaagttcgttaatttcaaa  17831700                                            --------->AHL20(1)                                            <---------AHL20(1)                                            --------->AHL20(2)                                            <---------AHL20(2)                        --------->DAG2     --------->AHL20(2)          <---------ARR11(3)               <---------AHL20(2)          --------->ARR11(3)   --------->AtLEC2                   ---------->DOF2                   -      --------->At4g35610   <-------TEIL--------->AHL20(2)      <---------HSFB2a(2)                 <   <------ZmHOX2a(2)    <---------------AtSPL8           <---------ANAC46                           -  --------->ARR11(3)   ---------->DOF2 --------->AHL20(2)<---------ANAC58                           <  <---------ARR11(3)--------->YAB1   --------->YAB1     <-------TEIL               >>>>>>>>>EIN3 <--- ------ATHB12       --------->AHL20(2) <---------AHL20(2)<---------ANAC58         <-------TEIL<------   tcaagatcagaagacctcacaataaaaaagttcatacaaaaataaataaattgttaagttcgtgttcccaaagaatgtttcatatacattgacaacctgt  17831800           --------->REM1(1)    --------->DEAR3(1)    <---------ALFIN1   --------->ANAC58                                                                    --------->YAB1   --------->ANAC46                                                                   <---------YAB1   --------->ANAC58                                                                   <---------ATHB12  ------->TEIL                                                          <---------AHL20(2) -------->ZAT14                                                         --------->AHL20(2) ---------ZAT18                                                   ----------->GT1     <<<<<<<<<ARR1 -------->ZAT18  <---------ARR11(1)                              --------->ANAC46     <<<<<<<<<ARR2 ---------ZAT14  <---------ARR11(3)                            --------->MYB52(1)   --------->WOX13(1) ------ANAC46    --------->ARR14(2)                        --------->AtLEC2<----------ID1           < -----RAV1(1)   <---------CCA1(2)--------->ANAC46       ------>ZmHOX2a(2)---------->DOF2      <------ZmHOX2a(1)   tgtgcaccccccttcaccatatctaagagagaaacacaaaacaaaacacacttactgatccatgtaaacggaaattaaagacaaaacaatcatagaggaa  17831900                                   --------->DEAR3(1)                                   --------->RAP2.3(2)                                   --------->RAP2.3(3)                                   --------->RAP2.6(2)                                  --------->DEAR4(2)                                  --------->ERF1                                  --------->ORA47(2)                                  --------->ATERF1(1)                                  --------->RAP2.3(1)                                 <---------ATERF1(1)                             --------->YAB1                            <---------YAB1                          --------->YAB1     ------>MYB46(1)--------->ANAC58 <------NtERF2                                  <---------ANAC58     ------>MYB83   --------->ANAC58------>NtERF2                                   <---------ANAC58    --------->WOX13(1)   <---------YAB1                                       <---------YAB1        < -------->P   --------->AtLEC2  --------->DEAR3(1)                           <-----------HVH21      < -----------GT1     --------->ANAC46<---------ATERF1(1)                     <---------ZAT6 ------>ZmHOX2a(1)   acttaccaatctctccatccaaacgctattatcatcgccgccttcttgttatcggtccaatgtattagttgaaagttagtgtcattgctggtcctcggtc  17832000  Previous    Next  AGI:  At1g48268.1    Description:  pseudogene of F-box family protein Range:  from: 17830290    to: 17831492    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g48270.1    Description:  GCR1 (G-PROTEIN-COUPLED RECEPTOR 1). similar to G-protein coupled receptor [Pisum sativum] (GB:AAY30370.2); contains InterPro domain cAMP-type GPCR; (InterPro:IPR000848); contains InterPro domain GPCR, family 2, secretin-like; (InterPro:IPR000832) Range:  from: 17831621    to: 17834088    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version