Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                --------->ANAC55(2)                                                                       <-----------GT1                                                                    <---------ICU4 -------AGL15                                                       <--------HAHB4 ------>AGL15              --------->ICU4   --------->AHL20(2)   <---------ZAT6 ------->AGL3             --------->At5g28300        <---------ICU4<---------YAB1           ---------   tttgaatcgaattcatattgcctcgagcagtaattgagtttctacataaaatgaagcattacaagtagtattattacctcatgtaatcggacaatgtttg  17820600                                                                                                  ---                                                                                                 ----                                                                                              -------                       <---------ARR11(1)                                                     <------                       ------->TEIL                                        ----------->GT1   --------                      <---------CCA1(2)                             <------MYB46(1)          --------                      <---------GLK1(2)                             <------MYB83             --------                <---------ZAT6                                     --------->MYB111(1)       --------              <---------ANAC58                                     --------->MYB46(2)      <---------DOF5.7(2)              <---------ANAC46              <---------ICU4         --------->MYB59        --------->WRKY38(1)              <---------ANAC58            <---------AHL20(2)      <--------P             --------->DOF5.7(2) >ATHB12  <----------DOF2                --------->YAB1--------->AHL20(2) ----------->GT1<---------MYB52(1)   gatgcttcaaaactttgagtgttcgaatctctctcttaatctataaaaatcacaaaaaaaaatcaagagtaggtaagagttaaaatccaccgttaaccaa  17820700                                                        --------->ANAC58                                                        --------->ANAC46                                                        --------->ANAC58           --------->ARR11(3)                       --------->CCA1(2)           <---------ARR11(3)                <---------ANAC55(2)       ---------->DOF2                       <---------ANAC55(1)       ================================================bZIP_DOF                              <------- ----------->GT1                             <---------ANAC58                               <-------- ------>DAG2                                 <---------O2                                  <---------ATERF1(2) ------>DOF2<------ZmHOX2a(2)                --------->TGA1a                   <---------ANAC58 -------->AGL15                              --------->O2                      <---------ANAC58 ---------AGL15               ---------->DOF2<---------TGA1a             <---------YAB1    --------->ATERF1(2) --------->AG                 =========================bZIP_DOF      --------->ARR11(3)   <---------LBD16 --------->AGL1           --------->TOE1(3)  <---------ANAC46  --------->HSFB2a(2)  --------->ATHB12 --------->AGL2           --------->TOE2(3)  <---------ANAC58  <---------HSFB2a(2) <---------ATHB12 --------->AGL3        <---------GLK1(1)    <-----------------------TaNAC69(2) <---------ANAC46   aaagagaaataaagatcgaaaatggaaacctgaaaagagacgttaagacgtgtgatacacgacttctcgatgattttgatggcgaatgattcgccggtaa  17820800                             <---------HSFB2a(1)                       --------->ANAC58                             --------->HSFB2a(1)                       --------->ANAC55(2)                            ---------->TaMYB80                         --------->ANAC58                           <---------ARR14(2)         --------->ZAT2   --------->ANAC55(1)                           --------->ARR14(2)         <---------ZAT2   --------->ANAC46 --------->ARR14(2)      --------->LBD16             --------->ANAC58  <---------ANAC55(2)------>MYB83 <---------ARR14(2)     --------->ANAC55(2) --------->ZAT18         ------>MYB46(1)       ------>MYB46(1) --------->GLK1(2)     <---------LBD16      <---------ZAT18         ------>MYB83     <-----------GT1 <---------ARR11(3)<----------DOF2      --------->LBD16         -------->P      <---------DAG2 --MYB52(1)     <-----------GT1<-----------GT1       --------->ANAC58<---------ALFIN1--------->YAB1 -DEAR3(2)     <-----------GT1<-----------GT1   ------>ZmHOX2a(1)   -------->P  <----------DOF2   gagtatctatagcaaatttaacttttgcggaatttccctctccgagtgtcctcccaagctcgtacttaccaacacgcattccctttatcaccatccaatt  17820900                                                                                        --------->AHL20(2)                                                                                        <---------AHL20(2)                                                                                      <-----------TBP                                                                                      <---------AHL20(2)                                                                                      --------->AHL20(2)                                                                                    --------->AHL20(2)                                                                                    <---------AHL20(2)                                                                                    <-----------TBP                                                                                  <-----------TBP                                                                                  --------->AHL20(2)                                                                                  <---------AHL20(2)                                                                                --------->AHL20(2)                                                                                <-----------TBP                                                                                <---------AHL20(2)                                                                              <---------AHL20(2)                                                                            <-----------TBP                                                                            <---------AHL20(2)      --------->LBD16                                                   --------->AHL20(2)     --------->HSFB2a(2)                                                <-----------TBP <-----------TBP     <---------HSFB2a(2)                                     --------->YAB1 --------->AHL20(2)     <---------ANAC46                              *TSS     <---------TOE1(3) --------->AHL20(2)    <---------LBD16 --------->GLK1(2)     ---------->DOF2   <---------TOE2(3) <-----------TBP   --------->MYB52(1) --------->YAB1   <------ZmHOX2a(2)    <---------YAB1<-----------TBP   tagacttccggataaaacagagaatcaaaatcaatagatggatcaaaagagagtataagtttatggtaatgtgtttatatatatatatatatatatacaa  17821000                                 <---------At4g35610                                 <-------GAMYB                                 --------->At4g35610                                 <------NtERF2                                ------>NtERF2                                <---------MYB46(3)                                <---------RAP2.3(1)                                <---------ERF1                               --------->ATERF1(2)                               <---------RAP2.3(3)                               <---------RRTF1(2)                               <---------ATERF1(2)                               <---------RAP2.6(2)                               <---------RAP2.3(2)                               <---------DEAR3(1)      --------->ANAC58                               <---------ANAC58        --------->ANAC55(1)                               <---------ANAC46        --------->ANAC46                               <---------ANAC58        --------->ANAC58<---------ANAC58                              --------->RAP2.6(3)      --------->bZIP60(2)     ------>ZmHOX2a(1)                         --------->DAG2              <---------ALFIN1  <---------ANAC58             <                        ---------->DOF2   ----------------------->TaNAC69(2)------>ZmHOX2a(1)     <--           <------ZmHOX2a(1)--------->ALFIN1  --------->ALFIN1     <----------DOF2               ----   gaacgagattagaggagaagaagagaaaaagtggcggctgaatatggagaggggaacacgccactatctctttgcttcctccttctcccttcttctctac  17821100                                                                                        --------->HSFB2a(2)                                                                                  --------------->AGL15                                                                                 ====================                                                   <---------ICU4            ------>ZmHOX2a(1)                                                   --------->ATHB51         --------->TOE2(3)                                                   <--------HAHB4           --------->TOE1(3)                                                  --------->ICU4          ------>MYB46(1)                                                --------------->AGL15     ------>MYB83  <---------HSFB2a(2)        <---------HSFB2a(2)                     ==================================================MADS_MADS        --------->HSFB2a(2)                     --------->TOE2(3)      --------->HSFB2a(1)     <-----------GT1                       <---------HSFC1(2)          <---------HSFB2a(1)  <---------AHL20(2)  <---------AHL20(2)   <---------HSFB2a(1)         --------->HSFC1(2) ---------YAB1  <---------WOX13(1)         --------->HSFB2a(1)         <---------HSFC1(2)      ------ -------ICU4  --------->ATHB12             --------->HSFC1(2)    ---------->DOF2 <-----------------AGL3 ----->ICU4 <---------WOX13(1)       --------->MYB52(1)<-----------GT1------->TEIL<---------------AGL15   ttattattttctagattgattgattttttttgttttggataacgaaatttccataattaacaaaatgaaaagaaccttccttaacaatttttagaaacag  17821200                                      <---------------AGL15                                      --------------->AGL15   <---------YAB1                                     ----------------->AGL3 --------->YAB1     <---------MYB52(1)              ----------------->AGL2<---------YAB1                           -     --------->DOF5.7(2)         <-----------GT1         <---------ICU4                 <---------HSFC1(1)    --------->TOE1(3)        --------->AHL20(2)         <---------YAB1        <----------DOF2   <----    --------->TOE2(3)        <---------AHL20(2)         --------->ICU4--------->CCA1(2) --------->HSFB2a(2) =====================================================MADS_MADS      --------->ARR11(3) <---------HSFB2a(2) ----->GT1                  <---------AHL20(2)       <---------YAB1  <---------ARR11(3) --------->HSFC1(1)   ataaaacgttatctatgtttttagtttaaaattatttatcccatatatagtccatatgattattatgaacagatatatgtctttttatttctagaaatat  17821300                                          <---------------AGL15                                          --------------->AGL15                                         --------->YAB1                          <-----------GT1                                         --------->TOE2(3)                      <-----------GT1                                       --------->ARR11(3)              <-----------GT1                                       <---------ARR11(3)        <---------AHL20(2)                 -                                      <---------GLK1(1)          --------->AHL20(2)             -----                                      <---------CCA1(2)    <-----------GT1<---------DAG2        <---- -------->YAB1               <-----------GT1              <-----------GT1 <----------DOF2       ----- -----YAB1       <---------ICU4  <----------DOF2   <---------ZAT6<---------AHL20(1)     --------->YAB1   gatcaaaatagctatttcatcatgttttttttttcctttgatatcttaatttagtgatattaaacattttatttcacttttatttccgactcataatgta  17821400            ---------->DOF2                        -------->ATHB1      <---------AHL20(1)                           <---------ICU4                        <-----------GT1      --------->AHL20(1)                           --------->YAB1                  --------->AHL20(2)     <---------CCA1(2)                   --------->ANAC58                         <---------AHL20(2) ----->ZmHOX2a(1)                        --------->ANAC58    <----------DOF2  --------->AHL20(2) ---->ARR14(2)              <---------ANAC58      --------->ICU4 <---------YAB1   --------->AHL20(2) -----ARR14(2)              <---------ANAC58      <---------ATHB51            <---------AHL20(2) -->TEIL   <---------AHL20(2)      ------->TEIL   <---------YAB1 <---------AHL20(2)<---------AHL20(2)   tcctcttatatattaaaagagagttttgatgcttatgtatatcaagcctacaattattctcatcttttttattgttttcatttattaaattctactatcc  17821500  Previous    Next  AGI:  At1g48260.1    Description:  CIPK17 (SNF1-RELATED PROTEIN KINASE 3.21); kinase. similar to CIPK1 (CBL-INTERACTING PROTEIN KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT3G17510.1); similar to CBL-interacting protein kinase 1 [Populus trichocarpa] (GB:ABJ91209.1); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) Range:  from: 17817644    to: 17820951    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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