Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         ------->GAMYB                                                         <---------GLK1(1) ----------->HVH21                                                  <---------MYB46(3) --------->At4g35610                    --------->DOF5.7(2)         <---------LBD16      <xxxxxxxxxxxxxxxxsmallRNA(i)     <---------ATHB12              --------->ALFIN1<-------GAMYB    --------->MYB52(1) -->ZmHOX2a(1)  --------------------->WRI1  --------->MYB52(1)<---------ALFIN1   tcttccaatctattttgccttcgtttacttcgcctaagtggagaacaaactgcggttgcatttcccacatcaacggactgacctcgagcttcttctccaa  17816800                 ------>NtERF2                 --------->LBD16                --------->HSFB2a(2)               --------->RAP2.6(3)               <---------LBD16                                                       --------->ALFIN1               --------->SPL7<---------At4g35610                      --------->DOF5.7(2)             ------>ZmHOX2a(1)           <---------At4g35610      --------------------->WRI1         <-----------------AGL1------->GAMYB   <<<<<<<<<TBF1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      <---------ANAC58       --------->At4g35610         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------      <---------ANAC58 <---------MYB46(3)--------->At4g35610  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   tttgatttgcttctccttccggcattggttcaactgcatcgtgagcttcttcttccaatctgatttgccttcgtttacttcgcctaagtggagaacgaac  17816900              --------->bZIP60(2)                                                         <----------DOF2            <---------ALFIN1                                                             <---------ANAC58            ----------->RAV1(1)                                                          <---------ANAC58       <---------At4g35610                                                        --------->LBD16       --------->At4g35610                                                        ------>NtERF2       =================RAV                                                     <---------LBD16      --------->ARR14(2)                                                        --------->SPL7-------      <---------ARR14(2)                                                      ------>ZmHOX2a(1)     --------->O2                                                          <xxxxxxxxxxxxxxxxsmallRNA(s)     <---------ALFIN1                                               =================HOX2a_HOX2a <---   ================RAV                   <---------WRKY18(1)        ------>ZmHOX2a(2) <<<<<<<<<MYB2   ----------->RAV1(1)                  ----------->HVH21         <---------ARR14(2) <-------GAMYB   <---------ALFIN1                    <----------DOF2            --------->ARR14(2)<---------DEAR3(1) ------>NtERF2--------->REM1(1)       <---------ANAC58         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)-- ->TEIL----------->RAV1(2)            <---------ANAC58       <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<------   ttcggccacatctgccacatcaacatttgatactacattcgcttgacctcgagcttcttctccaattcgatctgcttctccttccggcgttgctttagct  17817000                    --------->LBD16                    ------>NtERF2 <---------ARR14(2)      --------->At4g35610         --------->ARR14(2)      <---------ZAT18 ----------->RAV1(1)      <---------At4g35610        <---------At4g35610 -->At4g35610      --------->ANAC46                  --------->ANAC46                               - ----TEIL          --------->ANAC58              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)------>ZmHOX2a(1) ----->TEIL        --------->ANAC58        <-------TEIL<---------ALFIN1        <----------DOF2    <-- ---At4g35610     <---------LBD16--------->At4g35610--------->MYB46(3)     <---------CCA1(2)---------   gcatcttgtgctccctcttctccgccacaagactcagataccacattcgtttcacccacaacttcttctccaatttcatctctttctcctcgcggtagtg  17817100                                                          --------->MYB52(1)                                                          <---------ICU4                                                       --------->YAB1                                                       <---------ICU4                                                    <---------ICU4                                                    --------->YAB1                                                   <---------ATHB12                                             --------->AGP1                                             <---------ARR14(2)                                             --------->ARR14(2)                                             <---------ARR11(3) ------>NtERF2                              <---------ANAC58   --------->WOX13(1)                   --------->ARR14(2)        --------->ARR11(3)--------->ANAC58                   <---------ARR14(2)       --------->GLK1(1)  --------->ANAC46                   <---------GLK1(2)        <---------GLK1(1)  --------->ANAC58 -------->REM1(1) ------>MYB83<---------ANAC58--------->CCA1(2)--------->bZIP60(1) --------DOF2     ------>MYB46(1)    --------->ATHB12 <---------YAB1            --------->MYB52(1) >ALFIN1    --------->MYB46(3)<---------ANAC46<------ZmHOX2a(2)<---------bZIP60(1)         *TSS     <   cttcaactccatctcccaccaaattctctgattcgtgaagcattggagatccaatcatcataacgacgccattctttctaactaatggcatttcagaaaa  17817200                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                             <------MYB83                                             <------MYB46(1)             <---------TOE2(3)              --------->MYB59             <---------TOE1(3)              <---------TOE2(3)                                      xx          --------->ICU4              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               <---------AHL20(2)        --------->WOX13(1)           <-----------RAV1(2)             <---------WOX13(1)   --------->AHL20(1)      ------------>CBF              <------NtERF2                   <------------CBF      <---------AHL20(1)     --------->ANAC58              ------>NtERF2               <---------TOE1(3)         --------->AHL20(2)     --------->ANAC58             <---------RAP2.3(3)          <---------TOE2(3)         --------->YAB1 ------------CBF         <---------YAB1 <------ZmHOX2a(1)     <---------ANAC46           <---------AHL20(2)   cgaattgaagcaattagggtttcgattttgattttgggggcaggattaggtttcgatttgggtttagggtaattgattttgttttgagaaattatattct  17817300                                                                            --------->WOX13(1)                                <---------SPL7                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                               <---------ANAC46             xxxxxxxxxxxxxxxx>smallRNA(s)                              <------NtERF2                ------->GAMYB <-----------HVH21                             ------>NtERF2           <---------ANAC58   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                            --------->DEAR3(1)       <---------ANAC58 --------->At4g35610           <                   --------->ANAC58                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            -                   --------->ANAC58     <---------ZAT14  xxxxxxxxxxxxxxxx>smallRNA(s)         <------            <----------DOF2 <---------ANAC46 --------->MYB52(1)   <xxxxxxxxxxxxxxxxsmallRNA(i)-------      <---------GLK1(1)--------->MYB52(1) --------->YAB1--------->MYB52(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)   <---------YAB1  --------->ANAC46 --------->ZAT6<---------GLK1(2)--------->RAP2.6(3)       <------ZmHOX2a(1) xxxxxxxxxxxxxx>smallRNA(i) <---------DEAR3(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxx   cgattttgatttctctttagcacgaaaacggcgtcgtaagactatagtaacagatgcttaacggactaaaacggctgtcaattacgctgttagaaggatt  17817400                                                                                                  <xx                                                                                                  <--                                                                                                 ----                                                                                                 <---                                                                                                 <xxx                                                                                                 <xxx                                                                                                -----                                                                                             <-------                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                            <--------                                                                                            ---------                                                                                            xxxxxxxxx                                                                                            xxxxxxxxx                                                                                            ---------                                                                                           xxxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           xxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                     <-----------GT1                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                               xxxxxxxxxxxxxxxx>smallRNA(i)                                                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                     <---------TOE2(3)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     <---------TOE1(3)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   ---------->DOF2                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                           ------->GAMYB                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                          --------->ANAC46                            xxxxxxxxxxxxxxxx>smallRNA(i)<xx                       <---------WRKY12                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       <xxxxxxxxxxxxxxxxsmallRNA(s)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       <---------WRKY38(1)                          <---------ZAT6xxxxxxxxxxxxxxxxxxx                       <---------WRKY45----------->GT1              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 ----------->GT1<xxxxxxxxxxxxxxxxsmallRNA(s)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <-------GAMYB  <xxxxxxxxxxxxxxxxsmallRNA(s)                xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxx      --------->MYB55(2)  --------->ANAC58                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      ----------->GT1 <xxxxxxxxxxxxxxxxsmallRNA(i)                xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxx      <---------MYB46(3)<---------DOF5.7(2)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     --------->ALFIN1<xxxxxxxxxxxxxxxxsmallRNA(i)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------At5g28300 <-----------HVH21----------->GT1            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -----------GT1    <------NtERF2--------->TOE2(3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -------->MYB52(1)xxxxxxxxxxxxxxxx>smallRNA(s)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxx ---ARR11(3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <---------DAG2    <xxxxxxxxxxxxxxxxsmallRNA(i) -->ARR11(3)  --------->MYB59<xxxxxxxxxxxxxxxxsmallRNA(i)<----------DOF2   xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxx>smallRNA(le3) --------->ANAC58           <---------WRKY12----------->GT1<xxxxxxxxxxxxxxxxsmallRNA(i)   tttaacggtggttaattaggccgagtcaacgcaaacttaaaggttaaaacagaagtcaactttttgttgagagttaaaacggccatttcacgagttcacg  17817500        xxxxxxxxxxxxxxxx>smallRNA(i)        --------------->AGL15 xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -------MYB52(1) ----->At5g28300 ----GAMYB xxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxsmallRNA(s) ------>GT1 --DOF5.7(2) xxxxxxxx>smallRNA(s) xxxxxxxx>smallRNA(i) -ZAT14 <---------------AGL15 >ZAT18 ============================================================MADS_MADS xxxxxxx>smallRNA(i) xxxxxxx>smallRNA(s) >ZAT14----------------->AGL1 xxxxxxxxxxxx>smallRNA(si3) xxxxxx>smallRNA(i) xxxxxxxxxxxx>smallRNA(fl3) xxxxx>smallRNA(i) xxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxsmallRNA(fl3) xxxxxxxxx>smallRNA(fl3) xxxsmallRNA(s) xxxxxxxxx>smallRNA(le3) xxsmallRNA(s) xxx>smallRNA(le3) xxsmallRNA(se3) xxxxsmallRNA(se3) xx>smallRNA(si3)                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxsmallRNA(si3)                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxsmallRNA(le3)                                      <---------YAB1 xxsmallRNA(fl3)                                      --------->AHL20(2) x>smallRNA(si3)              --------->AHL20(2)     <---------ICU4                          <------- xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <---------------AGL15                    <------- xxx>smallRNA(si3)      <---------TOE1(3)  ---------->ID1 <---------HSFB2a(2)                -------- xxxxxxxxxxx>smallRNA(i)<---------TOE2(3) <-----------GT1 --------->HSFB2a(2)     ----------->GT1 xxxxxxxxxxxxxxxxxsmallRNA(se3)<---------AHL20(2)   --------->ICU4               --------->DAG2 xxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <-----------GT1--------->YAB1                ---------->DOF2   gttaatttggccattttttgtaagttgaggtattaaataacatttttccctataatttttatagaaacttgaaaacaacttataaagtaaaacaaaaaat  17817600                                                <-----------GT1                                               --------->ICU4                                   <---------ARR14(2)                                   --------->ARR14(2)  ------>ZmHOX2a(2)                <---------ZAT14    --------->TOE2(3) --AHL20(2)            --------->MYB52(1) ----------->GT1 --AHL20(1)         <---------YAB1 --------->ZAT14    --------->TOE1(3)                         <---- ->AHL20(2)      <---------AHL20(2)--------->ZAT18 <---------ALFIN1          --------->YAB1 <------ZmHOX2a(1)   ttgatctaaaacaacttatattatgaaacggagggagtatactgatgtaattaccaccttaaaaaatgaattgctgctatgagcatcttcataaggagcc  17817700  Previous    Next  AGI:  At1g48250.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35400.1); similar to retinitis pigmentosa GTPase regulator-like protein [Takifugu rubripes] (GB:AAG00554.1) Range:  from: 17816127    to: 17817191    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g48260.1    Description:  CIPK17 (SNF1-RELATED PROTEIN KINASE 3.21); kinase. similar to CIPK1 (CBL-INTERACTING PROTEIN KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT3G17510.1); similar to CBL-interacting protein kinase 1 [Populus trichocarpa] (GB:ABJ91209.1); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) Range:  from: 17817644    to: 17820951    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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