Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -     <-----------GT1                                                         --------->GLK1(2)      <    <-------TEIL                                                             --------->ARR11(3)     <  <---------ARR14(2)                                         --------->GLK1(2)                      -  --------->ARR14(2)                                     >>>>>>>>>MYB98      <---------ARR11(3)<-----  <---------GLK1(2)     <-----------GT1                ------>ZmHOX2a(1)    --------->RVE1(1)--------   ctcagattcactatcccaactcttattttctcgtctgtgaaactcaaattcaatctcctaacaaatctagttcccaaaaaatctatagtcttgtcgataa  17815200                                                                                ------->TEIL                                                                                --------->GLK1(2)                                                                                --------->ARR14(2)                                                                             <---------MYB52(1)                                                                            --------->LBD16                                                                 --------->ANAC55(2)                                                                 <---------ANAC55(2)                                                                 --------->ANAC58                                                        <---------ARR14(2) <---------ANAC46 -------->ZAT14                                         --------->ARR14(2)<---------LBD16 ---------ZAT18                                      --------->ANAC58<---------GLK1(1) -------TEIL                               --------->ANAC58      --------->ANAC58   --------->At4g35610 -------->ZAT18                            --------->ANAC46     <---------LBD16 <---------ARR14(2) ----DOF5.7(2)                     ---------->DOF2   --------->ANAC58--------->GLK1(1)         <----- ->DOF5.7(2)              ----------->GT1  --------->ANAC58  <-----------HVH21 <---------CCA1(2)    -   cgtacactcgaatgaaaaattgaagagatagttaagagaaagcatacgcgagggctcggaaatggtcacggatttctccgtgaatctgctccaaatgagg  17815300                            --------->LBD16                           <---------ANAC46                          <---------LBD16                     <-----------ARR10                ---------->DOF2                     <---------ARR11(3)          <-------GAMYB                     <---------ARR11(1)      ------>NtERF2                     --------->ARR14(2)      --------->LBD16                    <---------CCA1(2)       <---------DEAR3(1)                ------>NtERF2 <---------GLK1(2) <---------MYB46(3)               --------->RAP2.6(2)         <------NtERF2<----------ID1               --------->ANAC58            <---------LBD16             <---------At4g35610           --------->ATERF1(1)                     <---------GLK1(1)  --------->At4g35610<---------ARR14(2)   <---------ATERF1(1)                      --------->GLK1(1) ----RAP2.3(3) --------->ANAC46          --------->ARR14(2)                     --------->LBD16 --------->CDC5--------->ANAC58          <---------ARR14(2)          ---------->DOF2    ------>ZmHOX2a(1)   gctcatcggcaattcagacgccatatctgccggattatttcaggctccggcgattgaaaagacaaaaccctaagagcaaacccagaaatccttccccctc  17815400                                                        --------------->AGL15                                                        <---------------AGL15                    ----                                                       ----------------->AG                     <----                             <---------ICU4            =========================================MADS_MADS                  --------->DEAR3(1)                   <-----------------AG                    ------                 --------->ANAC46                      ----------------->AGL1                  ------                <---------At5g28300                    --------->TOE1(3)                   ----------               <-----------GT1      ---------->DOF2    --------->TOE2(3)        <---------------AGL15          <----------DOF2   <---------ATHB12   ----------->GT1                ----------->GT1  <-----          <---------DAG2   <---------ARR11(3)---------->DOF2                 ----------->GT1   <-----   aaaaaaaaaaaactttttcaccgcatcaaaatcattcccaaagactgaaaagaaaaaccctaatttggaagagaagaaactgataaaaatggaaaaagat  17815500            --------->ANAC46                                                                   <-----           <---------LBD16                                                                     <-----        ---------->DOF2                                                                  --------->AHL20(2)    --------->ANAC58                                                                     <---------AHL20(2)    --------->ANAC58                       ---------->DOF2                               --------->ATHB51 -->ZmHOX2a(2)                        ----------->GT1                                    --------->ATHB12 --ZmHOX2a(2)                        --------->ANAC58                  <---------ANAC58  <---------ICU4 --->ARR14(2)    <------NtERF2       --------->ANAC58                  <---------ANAC58 --------->ICU4 --->ARR11(3) <------NtERF2         --------->SPL7                 <---------ANAC58     <---------YAB1 >DOF2 --------->ARR14(2)<---------At4g35610                     --------->ZAT14   <---------ANAC55(2) ----ARR11(3)<-----------HVH21     --------->MYB52(1)            <---------ZAT14   --------->ANAC55(2) ----ARR14(2)----------->RAV1(1)  <---------SPL7---------->DOF2*TSS<---------ANAC58----------->GT1   cggagaacgaaaacgcggcagagcttaagctctcatcgaacggaaaaaaggaaagagagaattgaagttcagtgcgaggctaatctcgtaattatttgct  17815600                              --------->AHL20(2)                              <---------AHL20(2)              <---------ALFIN1                             --------->AHL20(2)           --------->At4g35610                            <---------YAB1                <---------At4g35610       ----------->GT1   <---------YAB1              --------->At4g35610                 <---------MYB52(1)      --------->DAG2     --------->ICU4              <---------At4g35610               <-------------     ---------->DOF2  <---------YAB1            ----------->HVH21           <------ZmHOX2a(2) ----ANAC58  <---------AHL20(2)     --------->MYB52(1)    --------->ZAT2   --------->ARR11(3) ----ANAC58 --------->YAB1<---------ICU4      --------->CCA1(2)            <---------ARR11(3)   tatttgaaaaagtataatattagtttgattattaaaaaaaacagagagatttgacagcgaagctccaccatgttttagatcatatatagccgtttgaaga  17815700                                                         <---------DAG2                                                         <----------DOF2                                                   --------->ANAC46                                                   --------->ANAC58                                                   --------->ANAC58                                                  ------>MYB83                                   <---                                                <---------SPL7<---------HSFB2a(2)           <--------                 <---------ALFIN1               --------->TOE1(2)                        <---------MYB52(1)              <---------SPL7--------->ZAT14     --------->AtMYB61 --------->ANAC46      <---------MYB52(1)             <---------ANAC58                 <-----------ARR10   --------->ANAC58     --------->LBD16             <---------ANAC58       ---------->ID1------>MYB46(1) --------->ANAC58   <---------LBD16 --AGL15     <---------ANAC46<---------ALFIN1<------ZmHOX2a(1)--------->HSFB2a(2)  <-----------GT1   aaaaaactgaaaatgtcgtccacattgtgctacactctgtccctataggacctacgcaacttttctataagccatatttcaaatatttccggttattttt  17815800                                                                            ---------->DOF2                                                         --------->DAG2     <---------ICU4                                                 <---------YAB1          --------->YAB1                    <-------GAMYB          --------->AHL20(2)         <---------ICU4                    ----------->GT1       <---------AHL20(1)          --------->YAB1           <---------AHL20(2)             --------->ARR11(3)         <---------ATHB12         --------->AHL20(2)               --------->AHL20(1)        ------>MYB46(1)                <-        <---------AHL20(1)    --------->ANAC58 --------->AHL20(2)   ------>MYB83              -------  --------->TOE2(3)----------->GT1        <---------ARR11(3)       --------->WOX13(1)      --------->AHL20(2) --------GT1   ----------->HVH21     --------->AHL20(2) ---------->DOF2 <---------YAB1     <---------AHL20(2) -YAB1  --------->AHL20(1)    --------->ANAC58 <---------AHL20(2)--------->MYB46(3)<---------ZAT14---   gacatcttaatatatatatgacagttaaaaacaagcagattaaaaatatttatttttaaaaagttcaaccaatcataataaagactacagaatataaata  17815900                                                                                               xxxxxx                                                                                               <xxxxx                                                                                         <xxxxxxxxxxx                                                                                        ----------->GT1                                                                                      xxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                    <xxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                   <---------ZAT18                                                                                   --------->ZAT14                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  --------->DOF5.7(2)                                                                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                ------->GAMYB xxxxxxx                                                                              <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                              <---------At5g28300xxxx                                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                             <-----------GT1  xxxxxxx                                                                             --------->MYB52(1)xxxxxx                                                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                       xxxxxxxxxxxxxxxx>smallRNA(s)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                          --------->MYB52(1)<xxxxxxxxxxxxxxxxsmallRNA(i)                   --------->AHL20(1)                    ------->GAMYB xxxxxxxxxxxxxxxx>smallRNA(i)xx              --------->AHL20(2)                        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxx             --------->YAB1                             <---------MYB52(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           --------->AHL20(2)                           --------->MYB46(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      --------->AHL20(2)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxx      <---------AHL20(2)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   xxxxxxxx      --------->AHL20(1)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxx      <---------AHL20(1)                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxx   --------->AHL20(2)    <---------YAB1            --------->TOE1(3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->AHL20(1) --------->AHL20(2)           --------->TOE2(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------AHL20(2) <---------AHL20(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------ZAT14<xx --------AHL20(2)  <---------AHL20(1)        <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -->ICU4   <---------AHL20(2)               --------->AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------>AHL20(2)--------->AHL20(2)    ----------->GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxx   ttaaataaaatattaaaataatatataatttttgggaaaaatgttatttaatacctcaactaacaaaaaatggccaaattaaccgtgaactcgtgaaatg  17816000       --------->ZAT6     <-----------GT1    <-----------GT1  <xxxxxxxxxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxxxxxxsmallRNA(i)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxsmallRNA(i) xxxxxxx>smallRNA(le3) >smallRNA(s) xxxxxxx>smallRNA(se3) xxxxsmallRNA(si3) xxxxxx>smallRNA(si3) xxxxxxxsmallRNA(si3) xxx>smallRNA(fl3) xxxxx>smallRNA(le3)                                --------->WRKY38(1) xxxxxsmallRNA(si3)                                 --------->WRKY12 xxx>smallRNA(fl3)                                  ----------->HVH21 x>smallRNA(se3)                                    --------->WRKY45 xxxsmallRNA(si3)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxx>smallRNA(le3)                                 --------->DOF5.7(2) xxsmallRNA(le3)                                  <-------GAMYB xx>smallRNA(si3)                                <---------ANAC58 xx>smallRNA(se3)                                <---------ANAC58     <---------ALFIN1 xxsmallRNA(si3)                               xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxx>smallRNA(le3)                 <xxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxx>smallRNA(si3)             xxxxxxxxxxxxxxxx>smallRNA(s) <---------MYB52(1) xxxxxxxxxxxxxxxx>smallRNA(se3)               xxxxxxxxxxxxxxxx>smallRNA(i)--------->At5g28300 xxxxxxxxxxxxxxxxx>smallRNA(si3)             xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxx>smallRNA(i)                      <---------TOE2(3)          ------->GAMYB xxxxxxxxxsmallRNA(s) --------->WRKY12 xxxxxxxxxxxxxxxx>smallRNA(i)  <---------MYB55(2)   xxxxxxxxxxx xxxxxxxxxxxxxx>smallRNA(le3)          <----------DOF2               --------->MYB46(3)xxxxxxxxxxxxxx xxxxxsmallRNA(s) --------->DAG2      --------->TOE1(3)      <---------MYB59     --------->ARR11(3) - xxx>smallRNA(i) ---------->DOF2      --------->TOE2(3)    ------>NtERF2 ----------->GT1<xxxxxxxxxxxx xxxxxxxxxxxxxxsmallRNA(i)         <-----------GT1<xxxxxxxxxxxxxxxxsmallRNA(s)   <---------ARR11(3)<- xxxxxxxxxxxxx>smallRNA(fl3)      <-----------GT1<---------ANAC46  <-----------GT1   ------>ZmHOX2a(1)   gccgttttaactctcaacaaaaagttgacttctgttttaacctttaagtttgcgttgactcggcctaattaaccaccgttaaaaatccttctaacagcgt  17816100  Previous    Next  AGI:  At1g48240.1    Description:  ATNPSN12 (novel plant SNARE 12); protein transporter. Identical to Novel plant SNARE 12 (NPSN12) [Arabidopsis Thaliana] (GB:Q9LNH6;GB:Q9SX59); similar to NPSN13 (novel plant SNARE 13) [Arabidopsis thaliana] (TAIR:AT3G17440.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70926.1); contains InterPro domain Target SNARE coiled-coil region (InterPro:IPR000727); contains InterPro domain Vesicle transport v-SNARE; (InterPro:IPR007705) Range:  from: 17812675    to: 17815563    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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