Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 ------>MYB46(1)                                     <---------ARR11(3)                                             -                         --------->ANAC58    --------->MYB46(3)                                    <-                         --------->ANAC58   --------->ANAC58  --------->ANAC58                    ---                         --------->ANAC46   --------->ANAC58  --------->ANAC46                    ---                       ---------->DOF2     ------->TEIL       --------->ANAC58                    <--              --------->ATHB12 --------->TOE2(3)         <<<<<<<<<<GATA-1                         <--             --------->ICU4   --------->REM1(1)------>MYB83  --------->LBD16                      ---  ------->GAMYB <---------WOX13(1)   --------->GLK1(2)  <---------GLK1(1)                  --------->AHL20(2) --------->RAV1(1)----------->GT1    --------->ARR14(2) --------->GLK1(1)        --------->TOE2(3)<-- ---->YAB1   <---------YAB1 ----------->RAV1(1)----------->RAV1(1)         --------->AHL20(2)<-------   acaacagaaaacgttatgattggataaaagcaacatcaaaatctgaacccaacatttgaaatccacgaaataggcgattaaatccataacaaattataca  17792100                                                                                  <------ZmHOX2a(2)                                                                                 --------->ARR11(3)                                                                                 <---------ARR11(3) ----->ZmHOX2a(2)                                                            ---------->DOF2 -----ZmHOX2a(2)                                                           --------->ANAC58 ------>ARR14(2)                                                           --------->ANAC58 ------>ARR11(3)                                                           --------->ANAC46 -------ARR14(2)                                                          --------->LBD16 -------ARR11(3)--------->YAB1                        --------->YAB1  --------->PCF2 ------>AGP1  --------->ANAC58            --------->ANAC58            --------->ANAC46            --- -------AGP1  --------->ANAC58            --------->ANAC46          <-----------GT1        --------->At4g35610 ----GT1  ------>ZmHOX2a(2)               --------->ANAC58         ----------->HVH21       <---------At4g35610   gatctgtttcgatctcaagcatagagaacccaaatcgtatacatgcgcaagaagaaagataactactatttgaccccacgaaagatcaatggatgctgaa  17792200                                    <-------TEIL                                   --------->GLK1(2)                                   --------->ARR14(1)                                  --------->ARR14(2)                                  --------->ARR11(1)                                  <---------ARR14(2)          <---------LBD16                                ----------->ARR10<------ZmHOX2a(1)--------->ARR14(2)    <------NtERF2                              <------ZmHOX2a(2)  =========================HOX2a_HOX2a  --------->LBD16                              ==========================HOX2a_HOX2a<------ZmHOX2a(2)  --------->DEAR3(1)                              <-----------------AGL1         <---------ANAC46    --------->ARR14(2)                        --------->TOE1(2)     <---------LBD16<---------ANAC58    <---------ARR14(2)--                      ------->TEIL<---------GLK1(2)----------->GT1<---------ARR14(2) <---------LBD16- ------>AHL20(2)   <---------MYB52(2) ----------->GT1        <---------ANAC58   <---------CCA1(2)  --   tttaacacagagagaagagaaacgaaccagggatcagattcggaaaattcaggaagtgaaattgctcggatcagagatgctcgtatcgccggagaagagc  17792300                                                                                 ------>MYB46(1)                                                                                 ------>MYB83                                                                                XXXXXXXXXXXXXXXXXXXX>MIR399F                                                                               <---------MYB59                                                                             --------->SPL7                                                                           <---------SPL7       ---------->DOF2                                                    ------->GAMYB <---------LBD16                                                         --------------->AtSPL8   --- ------->MYB46(3)                                                        --------------->AtSPL3------ ------>GAMYB<------ZmHOX2a(1)    <-----------GT1                       <---------At5g28300  <------- --------->HVH21           <---------TOE2(3)                           <-----------GT1     <---------   aacgacggagaaagaggaatttcgcaattgagatttataccatctaaaaacttgagccggtctaaaccgtatttaaccgtaccaaatcagatttaaccgg  17792400                                                            --------->TOE1(1)                                                           <---------LBD16                                                           --------->HSFB2a(2)                                                      <----------DOF2                                                  ----------->HVH21                                                 <---------MYB59                                                --------->At4g35610     --------->DAG2                            <---------ARR14(2)    ---------->DOF2                            --------->ARR14(2) ------>At4g35610                       ---------->DOF2*TSS<---------HSFB2a(2) --->LBD16          <---------YAB1    XXXXXXXXXXXXXXXXXXXX>MIR169H-N                             ---- --LBD16    <------------CBF  >>>>>>>>>TBF1   <------ZmHOX2a(1)                                  <--- --GT1----------->GT1--------->YAB1  XXXXXXXXXXXXXXXXXXXX>MIR169D-G   <----------ARF1    <----------ID1   agatgaaaaagtgaaattgattttcataagaagaagaagagccaaagaggacctgacttttctcggacttgggagacaatggagactgaatacgaccaag  17792500                                           --------->GLK1(2)                                  ------>MYB46(1)                                --------->AtMYB61                                <---------MYB59     <---------ANAC46                               ----------------->AGL1              <-----------RAV1(2) ------>MYB83    ------>NtERF2              ---------->DOF2         <---------MYB52(1)  --------->ORA47(1)  ----------->HVH21  --------->MYB52(1)         <-----      ------>ZmHOX2a(2)      ------>NtERF2 <---------ARR14(2)      <---------ARR14(2)          ------     <------ZmHOX2a(2)      <---------ETT(1)     --------->DEAR3(1)--------->ARR14(2)     <---------ZAT14    <---------ARR14(2)      --------->DEAR3(1)--------->TOE1(2) --------->ANAC58    <---------ANAC58    --------->ARR14(2)   --------->DEAR3(1)--------->ARR14(2)   --------->ANAC58    <---------ANAC46 ----->ARR11(3) <---------At4g35610--------->ARR14(2)         --------->CCA1(2)     <---------ANAC58 ------ARR11(3) --------->At4g35610<---------ARR14(2)    ---------->DOF2 <---------ANAC46<----------DOF2   ttcttcgatccgttgctcaggtgaacatcgccgaccaaatcggagaatccgacgacgtagaaagagacggaaacggcgtaaaagtttcgtgcttcactga  17792600                                                       ------>NtERF2                                                       --------->LBD16                                                      --------->ANAC46                                         --------->ANAC46                        <-----------GT1                                   <-----------HVH21  <<<<<<<<<<E2Fa         <----------DOF2                             <------ZmHOX2a(2)        --------->ANAC58    ---------->ID1                            --------->ARR14(2)        --------->ANAC58  <------MYB46(1)                            <---------ARR11(3)       <---------LBD16    <------MYB83         *TSS                         <---------HSFB2a(2)      --------->ARR14(2) <---------ANAC58 ------>MYB83                      --------->ARR14(2)<---------HSFB2a(2)          <---------ANAC58 ------>MYB46(1)         ----------->GT1 --------->HSFB2a(2)      <---------ARR14(2)--------->ZAT2  --------->TOE2(3) ----ZAT14            <---------ARR14(2)--------->HSFB2a(2) <---------ATHB12 ------>ZmHOX2a(1)    <-- --->ZAT14  <-----------GT1 --------->ARR11(3)   <---------GLK1(2)  <---------ZAT2  <---------MYB59   agttttcgatgatgttactatccagttccagatcatccgtctcgcgaaacaggttcccgccaataaacttagcttggtccttttaacctaattctcaagt  17792700                                                                      <-----------------AGL1                                                                      ----------------->AGL2                                                          <-------GAMYB--------------->AGL15                                                         <---------DEAR3(2)                                                         <------MYB46(1)                                                         <---------MYB46(3)                                                         --------->MYB52(2) ----------------------->TaNAC69(2)                                                         <------MYB83 <-----------------AGL3    -----                                                        <---------DEAR3(1)--------->ARR14(2)   ------                                                      <-----------HVH21<---------------AGL15 <-------                                                      ------------>AtMYB77<---------ARR14(2) ------>NtERF2                                               <---------ANAC46       <-----------------AG   --------                                               <---------ANAC55(2)   ------>NtERF2           <-------                                               --------->ANAC55(2)   --------->LBD16         <-------                                               <---------ANAC58     --------->ANAC46        ---------                                               <---------ANAC58  <---------ARR14(2)      --------->ANAC58               <-----------------AGL3          <---------ANAC55(1) <---------LBD16       --------->ANAC46      <-------TEIL  <------------CBF          <---------TOE2(3)  --------->ARR14(2)      --------->ANAC58   <---------At4g35610                     --------->CCA1(2)    <---------GLK1(1)     <---------SPL7-   --------->At4g35610                    --------->ARR14(2) ------------>CBF       <---------------AtSPL8 --------DOF2  =========================================================================MADS_MADS <--   ctttgagcttcgtcggaactaaaattggacttaatcgaactacagatttacgtatgggtcggttgcaattccgccaaatttgggagtttgtacgcagccg  17792800           <---------MYB52(1)     ----------->HVH21     --------->ANAC58     --------->ANAC46     --------->ANAC58 ---->At4g35610 --->RAP2.6(2) <---------ZAT2 --At4g35610   <---------At4g35610 ->At4g35610   --------->ZAT2                                        <---------AHL20(2) --ZAT2--------->MYB52(1)                                           --------->AHL20(2) --ATERF1(1)   --------->At4g35610                          <---------GLK1(1) >DEAR3(1) <-----------HVH21                             <---------TOE2(3) -------->REM1(1)  ----------->GT1       ---------->DOF2 <---------TOE1(3) <---------TOE2(3) --------DOF2<---------ZAT18--------->TOE2(3)      --------->ICU4   <---------AHL20(2)             <-   cttcaacacgaccggtgagctcagtaaaaaccttgattctaactaaagcagcaatttttagggtttctgtttaaattgatgtttttttttgtttctatgg  17792900                                                                 --------->LBD16                                                                <---------ANAC58                                                                <---------ANAC46                                                       ------>ZmHOX2a(2)                          <--                                                     --------->ARR11(3)    <------MYB46(1)  ---------                                                     --------->ARR14(2)    <------MYB83     <--------                                                     <---------AGP1  ----------->ARR10  <---------YAB1      --------->ZAT14                                <---------ARR11(3)   <---------TOE2(3)<---------YAB1      <---------ZAT14   <---------MYB52(1)           <---------ARR14(2)   --------->MYB59--------->YAB1 -----NtERF2  <---------ZAT6                   --------->ZAT6   <---------ANAC58     <---------YAB1   cagagcaatacagtgagtgttacatcggtacttggtggaacatctgataacactggatctggcattgcgcgtagattaggttagactctgattataacaa  17793000  Previous    Next  AGI:  At1g48160.1    Description:  signal recognition particle 19 kDa protein, putative / SRP19, putative. Identical to Signal recognition particle 19 kDa protein (SRP19) [Arabidopsis Thaliana] (GB:Q943Z6;GB:Q9LNG9); similar to unnamed protein product [Vitis vinifera] (GB:CAO70908.1); contains InterPro domain Signal recognition particle, SRP19 subunit; (InterPro:IPR002778) Range:  from: 17790214    to: 17792693    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g48170.1    Description:  similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA95965.1); similar to hypothetical protein OsI_036449 [Oryza sativa (indica cultivar-group)] (GB:EAY82490.1); similar to Os12g0182800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066323.1) Range:  from: 17792455    to: 17793762    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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