Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          <---------DDF1                       <---------ETT(2)                       --------->ETT(2)                                                             <               <---------AHL20(2)                     <---------bZIP60(1)                           <               <---------YAB1             <-----------GT1                                          --            --------->AHL20(1)         --------->ARR11(3)              <---------ARR11(3)          <-            <---------AHL20(1)         <---------ARR11(3)              --------->ARR11(3)         <--            --------->ARR11(3)         <---------AHL20(1)             --------->CCA1(1)          ----            <---------ARR11(3)         --------->AHL20(1)   <----------DOF2                     <----            --------->ICU4        <---------YAB1      --------->bZIP60(1)               ----------->GT1 --------->CCA1(2)    ---------->ID1 ------->TEIL  <-----------RAV1(1)--------->RVE1(1)----------->GT1   atgatatgtgagaaaatattatttgtcgacatggttatgaatattttctacttatgttgtcactttagagaaatatctcataagttaatgggttaaataa  17671600            <---------TOE2(3)                                             ----------->HVH21        <----------DOF2                                        <---------AHL20(2)    <<<<<<<<<<GT-3b                                            <---------AHL20(1)                   - ---------CCA1(1)                                              --------->AHL20(1)                   < ---------RVE1(1)                   ------->TEIL            --------->AHL20(2)                     <- ------->ARR11(3)                ----------------------->TaNAC69(2) --------->ARR11(3)  <---------AHL20(2) --------ARR11(3)              --------->CCA1(2)          --------->AHL20(2)    ------>MYB83     <--- ----ZmHOX2a(1)        <---------ARR11(3)<---------AHL20(2)--------->AHL20(2) <---------MYB46(2) ---- ------->GT1<---------TOE1(3)<<<<<<<<<RAP2.2      <----------DOF2 <---------YAB1------>MYB46(1) <---- -----TOE2(3)          --------->ARR11(3)--------->AHL20(2)<---------AHL20(2) <---------MYB59   -----   ggatatttttctttaaggtttatgagattttagatatgtatattttattcgtctttgaaaattaatatatgattttgtgacctaacttcttaaatttcat  17671700    --------->YAB1 -------->AHL20(2) ---------AHL20(2)                                  ------>MYB46(1) --------WOX13(1)                                   ------>MYB83 ------ICU4                         --------------->AtSPL8                             <-----------TBP ----->ATHB12         <------------CBF            --------->TOE2(3)                  <----------DOF2 -----YAB1  ----------->GT1 ------>ZmHOX2a(2)     <---------MYB59         --------->YAB1          <-- ---->ICU4 ------->TEIL    --------------->AtSPL3--------->ANAC55(2) ------------>CBF<---------DAG2 -   gattaattatacgaatgtaatatccattgatcgtacataatgtacacatatacctaatttcataagtttaagacaatgaaaatagagctttttgtagttg  17671800                                           --------->RAP2.3(1)                                           --------->ATERF1(1)                                           <------NtERF2                                          ------>NtERF2                                          <---------ERF1                                          <---------RAP2.3(1)                                         <---------RAP2.3(2)                                         <---------RAP2.6(2)                                         <---------ATERF1(2)                          <---------ANAC58<---------ORA47(2)                                   ------                          <---------ANAC58<---------ATERF1(1)                                 <------             --------->ARR11(3)          --------->ATERF1(2)                     ---------->DOF2             --------->GLK1(2)           <---------ANAC46 <---------LBD16    --------->At4g35610            <---------GLK1(2)            <---------RRTF1(3)      --------->ARR11(3)           -------         --------->YAB1 <------MYB46(1)  <---------DEAR3(1)      --------->ARR14(3)          <-------      --------->YAB1    <------MYB83     <---------DREB2C(2)     <---------ARR14(3)  --------->ARR11(3)   --------->YAB1      <---------AtMYB61 <---------RAP2.3(3)     <---------ARR11(3)  <---------ARR11(3) -------WOX13(1)    <-----------RAV1(1)  <---------RRTF1(2)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)-- -------->YAB1 --------->YAB1   <----------DOF2       --------->ARR11(3)     <---------At4g35610-----   attaataagaataagaatcttgatgttggtgtgcctttctatggcggcgaagttaatgtcttcggaagacctccttgggagcttaaagacctatttcccg  17671900         <---------ZAT2       <---------ALFIN1      <------NtERF2     --------->ANAC58     --------->ANAC46     --------->ANAC58    --------->RAP2.3(3) --------->ANAC58 --------->ANAC58                                                                             <------ --->LBD16                                  <---------ANAC58                                  <------ ---HSFB2a(2)                               <---------ANAC58                     <---------At5g28300< -->HSFB2a(2)                             <---------ARR14(2)           --------->ALFIN1       <------ --LBD16 --------->ZAT2                   --------->ARR14(2)         <---------ANAC46     <---------ZAT14 -------->DOF2                    ---------->DOF2<---------ANAC46    <---------bZIP60(2)  --------->ZAT14 ---->LBD16------->GAMYB--------->ANAC46 <---------CCA1(2)<---------YAB1       ----------->HVH21    -   agaaagcccccaactggctattttttaagacacctccaaaggcatatcgtgccatggatgatgactgtatgaagtggaagagtgaccgtcgctacagcgt  17672000        <------MYB83        <------MYB46(1)       <---------MYB46(3)                                                                   xxxxxxxxx       <---------AtMYB61                                                                   <---------ALFIN1      <---------MYB52(1)                                                                   --------->REM1(1)    <-----------RAV1(1)                                                                --------->At4g35610 <---------ARR11(3)                                                                    <---------At4g35610 --------->ARR14(2)                                                                   --------->ANAC58 --------->ARR11(3)                                                                   --------->ANAC58 <---------ARR14(2)                                                               --------->ALFIN1 ---ANAC58                                                                   ------>ZmHOX2a(2) ---ANAC58                     --------->ANAC46                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---------GLK1(1)              --------->AtLEC2                             <------ZmHOX2a(2)     <-- ---ANAC46     <------ZmHOX2a(1)                          ----------->GT1  --------->ARR14(2)     --- -------->GLK1(1)         <---------ARR11(3)         <---------ATHB12      <---------ARR14(2)   -----   ggatatctgttggtgcaggaatcaacaatatccatgaaacacaactcttagactaatcaactgtgaaaaacacttgggatccgagtggaagctacacctt  17672100        --------->SPL7       ------>NtERF2      --------->ZAT18                                 <---------At4g35610    --------->ZAT18                                   <------NtERF2    <---------ZAT14                                   --------->At4g35610                          --    --------->ZAT14                                   --------->ZAT2                              <--    <---------ZAT18                                   --------->ATERF1(1)                       -----   --------->ALFIN1                                   <---------ZAT2                            <---- <---------ANAC46                                    <---------ATERF1(1)                       ------ <---------ANAC58                                --------->DAG2                               ------- <---------ANAC58            <-----------HVH21  ---------->DOF2                        ----------->RAV1(1) xxxxxxx>smallRNA(i)       ------->TEIL        ---------->DOF2                      --------->ANAC58 -------HSFB2a(2)<---------ANAC58            ------->GAMYB --------->LBD16          --------->ANAC58 ------>HSFB2a(2)<---------ANAC58           --------->ANAC58           <---------REM1(1)     -------- ------>RAV1(2)  <---------ANAC46           --------->ANAC58      ---------->DOF2   --------->ANAC46   ctggagtgcggacaacattccttgtactgtatgtcacatcgtggcaacgaaaaggcagctcccgagcccaaagttgtagttactcccagcaacaaaaata  17672200    --------->ANAC58    <----------ID1    --------->ANAC46                          <---------YAB1    --------->ANAC58                        <---------ICU4 ------->YAB1                        <----------DOF2 -------YAB1                     --------->DEAR3(1)                      <---------ICU4 ---->YAB1                       <---------ALFIN1                      ------>MYB46(1) -----ICU4                     ------>NtERF2--------->YAB1 ------>ZmHOX2a(1)      <---------ZAT6<---- --->ICU4                 --------->KAN4(2)--------->ICU4 --------->TOE2(3)   <---------YAB1    <---- -->AHL20(1)       <----------DOF2------>NtERF2-------->HAHB4          ------>MYB83   <-------------- ->YAB1            --------------------->WRI1 --------->ICU4          ----------->RAV1(1) <---------GLK1(2)   atgaaaacgacataccgtctcctttgaacataccgcctcctttgaataatgatgcatcatcctcaaaatcaccaacaattactagtgttacagaattggc  17672300      <---------YAB1                                          <---------MYB52(1)                 <---    --------->YAB1                                           --------->LBD16                  ------- <----------DOF2                                            --------->LBD16                  <------- -----ANAC58           <------ZmHOX2a(1)        ----------->GT1                            ---------- -----ANAC58      <---------ATHB12          ---------->DOF2<---------LBD16              xxxxxxxxxxxxx ---AGL1        --------->WOX13(1) ---------->DOF2        <---------LBD16              ------>NtERF2   atgctttcatgagagcatcaatgaaggagacacagtggaaagcttcaaaagtgtaatttctcccggtgtttttgtctctgaaatgcctcggcctagattc  17672400        --------->ATHB12          --------->At4g35610       --------->ICU4          <---------ATHB12                 --------->ANAC55(2)       <---------YAB1         ------>MYB46(1)            <---------ZAT18     <---------ICU4           ------>MYB83            <---------ANAC46     --------->YAB1          --------->WOX13(1)       <---------bZIP60(2)    --------->ICU4          XXXXXXXXXXXXXXXXXXXX>MIR844* --------->ZAT18                     ------->GAMYB    <---------ATHB12  <---------ICU4                  <---------ANAC58              <------ZmHOX2a(1) ------ANAC46        <---------YAB1                   <---------ANAC58           <---------LBD16 -->GLK1(2)          --------->ICU4              <---------ANAC58<---------MYB59 <-----------RAV1(2) --GLK1(2)       ----------->GT1--------->YAB1   <---------ANAC58--------------->AGL15     -------->P ->ARR10<---------ICU4--------->YAB1 <-----------GT1<-----------HVH21            --------->HSFB2a(2) xxxxxxxxx>smallRNA(le3) <-----------GT1    <---------ICU4   <---------MYB52(1)  <---------HSFB2a(2)   tgtgtaatcatgatttcaaaggtataattaccaatcatcttactacttattccctgtcgtgcccttacctatttttgttttgtccaggagagcaacccca  17672500  Previous    Next  AGI:  At1g47940.1    Description:  similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G18210.1); similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G18210.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO42214.1); contains domain PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN (PTHR10483); contains domain HYPOTHETICAL PROTEIN T2J15.14 (FRAGMENT) (PTHR10483:SF17) Range:  from: 17671954    to: 17673382    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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