Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         --------->ICU4                                            --------->ANAC58  ----------->GT1                             --------------->AGL15 --------->GLK1(2)  <------MYB83                                <---------------AGL15 --------->ARR14(2)   <---------AHL20(2)  <------MYB46(1)                  <---------HSFB2a(2)           --------->ANAC58        --------->AHL20(2) --------->MYB59                   --------->HSFB2a(2)         <---------AtLEC2         --------->AHL20(2) ---->TEIL<----------DOF2    <---------ARR11(3)    ---------->DOF2  <---------ARR14(2)------->TEIL ----ANAC46  <---------YAB1  --------->ARR11(3)  <---------------AGL15            <---------TOE2(3)--   tatttggtaattcttttgattcaaaatataagatgttttagaaattttctactaaaagaagttttgcaagtatctgcaaattttgatgtatttaataact  17605500                                                       <---------ARR11(3)                                                       --------->ARR11(3)                                                      --------->CCA1(1)                                               <---------ARR11(3)                                               --------->ARR11(3)                                              --------->RVE1(1)       <---------AHL20(1)                                  <---------YAB1      <---------RVE1(1)                               --------->AHL20(2)     <---------GLK1(1)                       <------MYB83           --------->CCA1(1)       --------->AHL20(1)          <--                       <---------MYB46(3) --------->AHL20(2)          <---------AHL20(2)       ------                       <------MYB46(1)--------->AHL20(2)             --------->AHL20(2)        <-----                   --------->ATHB12   <---------AHL20(2)             --------->YAB1            <-----                  <---------YAB1<---------AHL20(2)    --------->GLK1(1)                       -------              <---------YAB1   <---------AHL20(2)     --------->RVE1(1)                       -------       --------->YAB1<---------WOX13(1)   <---------AHL20(2)         <---------AHL20(2)   --------->ARR11(3)       --------->AHL20(2)      <---------AHL20(1)     <---------CCA1(1)                   <---------ARR11(3)       <---------AHL20(2)      --------->AHL20(1)    <---------ARR11(3)                 ----------->GT1 --------->HVH21<---------AtLEC2--------->AHL20(2)   --------->ARR11(3)               ---------->DOF2   cgtgaccatttatattatgcatgattggttgaatttatttttaaataaatatctagatatcttcttacaaattatattttgaaacagaaaaagataatat  17605600        --------->YAB1        <---------ICU4       <---------AHL20(2)       --------->AHL20(2)   <---------AHL20(2)   <---------YAB1 --------DOF2                                                                                      -- --->ARR11(3)    <----------DOF2                              <---------ANAC58                     <- ----ARR11(3)   --------->TOE2(3)                             <---------ANAC58         <-----------GT1 ----AHL20(1)<-----------GT1                             --------->YAB1    >>>>>>>>>SARD1 <----------DOF2 -->RVE1(1)--------->YAB1                               <---------YAB1     >>>>>>>>>CBP60g<---------DAG2 -->CCA1(1)<---------ICU4                           ----------->GT1 ----------->GT1    <---------AHL20(2)   ctttttttattaattatacctttatattagttttgtaaatgaaaaaatggcaagttgtataatagggtgagagtgaaatttggagtaatttactttttca  17605700                                                                    <---------AHL20(2)                                                                    --------->AHL20(2)                                                                   <---------YAB1                                                                   --------->ICU4                                                              ----------->GT1                                                              --------->ANAC55(2)                                                              <---------ANAC55(2)                                 <---------ANAC58       <---------AHL20(2)                         <---------AHL20(2)         <---------AHL20(2)         --------->AHL20(2)   -                --------->AtLEC2 <---------ANAC58   --------->AHL20(2)<---------TOE2(3)  --------->YAB1            <---------YAB1       <---------ANAC46<----------DOF2<---------AHL20(2)      --------->AHL20(2)      ------------>CBF   --------->AHL20(2)      ----------------------->TaNAC69(2) --------->AHL20(2) ------->AHL20(2)       --------->AHL20(2)<----------DOF2<---------AHL20(2)    <-----------TBP      < --------AHL20(2)    --------->ICU4   --------->GLK1(1) --------->AHL20(2)   <----------DOF2 <-------   tttaaaatttcaatattcttgcaaaaattaatatggagtgatttctttggtcttttaattaaatatgtaattaatgtttctttatataaaataaaaattg  17605800      <---------DDF1     <<<<<<<<<<bZIP19     --------->ETT(2)                                                 <---------ANAC55(1)     <---------ETT(2)                                                 <---------ANAC58     <<<<<<<<<<bZIP23                    <---------At4g35610          <---------ANAC58     <---------bZIP60(1)                 --------->At4g35610          <---------ANAC46  --------->ALFIN1                 <---------YAB1              --------->YAB1     <---------ARR11(3) -------->O2                       ----------->TBP             --------->AHL20(2) --------->ARR11(3) ---------O2                     --------->YAB1               <---------ATHB12   <---------GLK1(1) -----CBF      ---------->DOF2<----------DOF2             ------------>CBF       <---------CCA1(2) --   acaagtgtcgacatggtgaaagtgaaacatttcttttataaatagctgatttgtttttgtttcaataatatttcgtgtttttgatatcttggagttcaag  17605900                                                                                          <---------O2                                                                                          --------->ANAC55(2)                                                                                          <---------TGA1a                                                                                          <---------ANAC55(1)                                                                                          <---------bZIP60(2)                                                                                          --------->O2            <---------TOE1(3)                                                             <---------ANAC58            <---------TOE2(3)                                                             <---------ANAC46         <---------YAB1                                                                   <---------ANAC58        <XXXXXXXXXXXXXXXXXXXXMIR868                                                    --------->WRKY12      <---------YAB1                               --------->LBD16                  =================      <---------AHL20(2)                         <---------LBD16                    =================      --------->ICU4                             <-------TEIL                       ------>ZmHOX2a(1)    <---------RVE1(1)                           --------->ARR14(1)          ------>ZmHOX2a(2)    <---------CCA1(1)                           --------->CCA1(2)           ===============HOX2a_HOX2a   --------->AHL20(1)                          --------->ARR14(2)          <------ZmHOX2a(2)        -   <---------ARR11(3)      --------->DAG2      --------->ARR11(1)          ================HOX2a_HOX2a   --------->ARR11(3)     ---------->DOF2      <---------ARR14(2)         --------->ARR14(2)        < ----------->ARR10      --------->ARR11(3)    <---------At4g35610         <---------ARR14(2)--------- -------->DOF2    <---------HSFB2a(2)         --------->At4g35610     <---------LBD16  ----------->HVH21   ggaaagatattattagggtttgagaagataaagcagagttgaaatggcagatacggagaagagtttgcaatctctggatccaattcctgttgacgtgttg  17606000                                                                                                   --     ------>ZmHOX2a(2)                                                                             ==    <------ZmHOX2a(2)                                                                --------->ARR11(3)   <---------ARR11(3)                                                                <---------ARR11(3)   <---------ARR14(2)                                                            --------->YAB1  <---   --------->ARR11(3)                                                           <---------ATHB12 ----   <---------ARR14(3)                                                          --------->ANAC58  ----   --------->ARR14(3)                                                          --------->ANAC58------   --------->ARR14(2)<------NtERF2                                            --------->WOX13(1)<----   --------->AGP1    --------->At4g35610                                   --------->ANAC58    <----- ===========HOX2a_HOX2a                                                    --------->ANAC58    <----- ==========HOX2a_HOX2a     --------->ICU4                                 <---------LBD16      ------ -------->HSFB2a(2) ------>NtERF2  <-----------RAV1(2)               <---------ARR11(3)        <----- ---------HSFB2a(2)<---------ATERF1(2)                    --------->CCA1(2)--------->ANAC46    ------ >ALFIN1           --------->ATERF1(2)   --------->MYB52(2)   <----------ID1--------->LBD16<---------At4g35610   ttcgagatcttcttaaacttgccagcgaaatttttagccaggtttgtttgtgtatcgaagttatgggccaaaatcatccgcaatcaagatttcatcagat  17606100            --------->HSFB2a(1)            <---------ICU4           <------ZmHOX2a(2) ---->ZmHOX2a(1) =================HOX2a_HOX2a ------HSFC1(2) ----->HSFC1(2) -->ZmHOX2a(2)                            <---------DAG2 --->AGP1  <---------ATHB12--------->ANAC58                                              <----------DOF2 --ZmHOX2a(2)              --------->ANAC58                                              <---------DAG2 ----ARR14(2)              --------->ANAC46     <---------ANAC58                   --------------->AtSPL3 ----ARR11(3)           <---------KAN4(2) <----------DOF2    ------>MYB83   --------->ANAC58 --->ARR11(3)     --------->LBD16  --------->DEAR3(1)        ------>MYB46(1)--------->ANAC58 ----GLK1(2)<---------KAN4(1)   <---------ALFIN1<---------ANAC58   --------->DAG2  --------------->AtSPL8 --->ARR14(2)--------->KAN4(2)----------->RAV1(1)<----------DOF2 ---------->DOF2   <---------------AtSPL8   ccttctcgtttcgatcattccgagagaataagcaacaccgtctcctttttgctttcaaaaaccaaataaaaggttatcaagaaaattggtactttttctc  17606200                                                                                                 ----                                                                                                -----                                                             --------->TOE1(3)                -------                                                             --------->TOE2(3)              <--------                                                       --------->AtMYB61                    ---------                                                   --------->LBD16                         <------ZmHOX2a(1)                                                 <---------LBD16                      <---------ANAC46                   --------->ZAT18              <---------At5g28300                  <---------LBD16 <---------ATHB12--------->ANAC46              <-----------GT1               --------->ARR11(3)<-----   caaatcaactcatgtttcaactccactatatgagccaaactcactggttttaccggaccaaaacattaacaaatttgaagctctagttggggaggaacca  17606300                                                              <-------TEIL                                                          <-----------------------TaNAC69(2)                                                          <-------TEIL ------->RAV1(2)          <---------ANAC55(2)          <---------STY1(2) ---->MYB52(1)        <-----------HVH21                --------->STY1(2) -->MYB46(3)       --------->ALFIN1                    <---------ZAT2         <----------DOF2 -ARR14(2)       <---------ANAC46                      --------->ZAT2         <---------DAG2 >ARR14(2)     <---------ZAT14                       ------>ZmHOX2a(1) --------->ATHB12             < ----ALFIN1<---------------AtSPL8                <---------ARR11(3)  <--------P        <---------LBD16   cctgattttgaatcaagtacggtgtgtcacttgaagaaaatgcgataccaaaatcctagctacgtccatgggttgattagctttttatatggggaagaac  17606400  Previous    Next  AGI:  At1g47810.1    Description:  F-box family protein. Identical to F-box protein At1g47810 [Arabidopsis Thaliana] (GB:Q4PT00;GB:Q9FZF9); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G47800.1); similar to hypothetical protein OsI_036331 [Oryza sativa (indica cultivar-group)] (GB:EAY82372.1); similar to hypothetical protein OsJ_033959 [Oryza sativa (japonica cultivar-group)] (GB:EAZ19750.1); similar to F-box protein interaction domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95877.2); contains InterPro domain F-box associated type 3 (InterPro:IPR013187); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); co Range:  from: 17605944    to: 17606999    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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