Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                ----------->GT1                                                                          <---------YAB1                                                                    --------->AHL20(2)                                                                    <---------AHL20(2) --------->YAB1                                                   <---------AHL20(2)             ---- ------ANAC58                                                     --------->AHL20(2)          <------ ------ANAC46                                                   <---------AHL20(2)     <---------AHL20(2) ------ANAC58          <---------At4g35610              <---------At5g28300  ------->TEIL     ------- -------------------TaNAC69(2)                         <-----------GT1<---------AHL20(2)     <------- -AtLEC2               --------->At4g35610     ---------->ID1   --------->AHL20(2)     --------->AHL20(2)   cttgcataatgaaacgtttttagtaatctgaattagtccaatttgttttttcgcaattcactgtatatatatatatatgaatgtaaaatttaaataccta  17598700                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                       --------->ARR11(3)                       xxxxxxxxxxxxxxxxxxxxx --------->AHL20(2)         --------->DAG2                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------>DOF2               ---------->DOF2                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ---MYB59            --------->At4g35610                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -->TOE2(3)          <---------At4g35610 ------>ZmHOX2a(2)                    xxxxxxxxxxxxxxxxxxx>smallRNA(si3) --ANAC55(2)   <-----------GT1    <-----------GT1----------->GT1   ---------->DOF2xxxxxxxxxxxxxxxxxxx   aaagaaaatagttttttttactgagctaaaaaagttttactgatctcgactgagttaaaaatgtttcaaaaaagtcttaaaaaaaaaaaaaaaaaaaaaa  17598800                                                                     ---------->DOF2                                                                ------>MYB83 --------->GLK1(1)                                                               --------->MYB52(1)              ----------->HVH21                               --------->AtMYB61         --------->GLK1(2)                            <---------TOE1(2)     --------->ARR14(2) >smallRNA(le3)                               --------->MYB46(3)------>MYB46(1) x>smallRNA(si3)               ------>ZmHOX2a(1)      <---------TOE2(2)     <---------ARR14(2) >smallRNA(si3)               <---------MYB59 <---------MYB111(1) ------->GAMYB x>smallRNA(le3)   <------ZmHOX2a(1)    <------ZmHOX2a(1)    --------->MYB46(3)                <-----   aacgttgagaaaatcggtgaaggagcataagtcctaacttgaggagcaactactcataggtaaaccaacgggaaagcagatttcgaaattttctctagat  17598900                             --------->YAB1                            <---------YAB1                    --------->LBD16                  <---------LBD16                 ------------>AtMYB77                                                               -    --------->STY1(2) --------->ARR14(2)                                                            -  ------>ZmHOX2a(1)--------->LBD16     <----------DOF2                              <-------GAMYB   - ----ARR11(3)  <---------GLK1(1) --------->WOX13(1)---------->DOF2        <---------ANAC46      <----   aatcctagcaagaatggagtcccggttactatgatcaatctctttgaagattacaaagtgagaagatgaaaccatgttgtgaagcctgttgtttctctct  17599000                                 --------->MYB52(1)                                      <---------At4g35610 --------------->AGL15         <---------YAB1                                   --------->ZAT18 <---------------AGL15     <-------GAMYB                     --------->YAB1     <---------ZAT18 ---------------->AG      <---------MYB46(3)        <---------ARR14(2)  <---------ANAC46 --------->At4g35610 ---------------->AGL1    <------MYB83  --------->GLK1(1)    <---------ICU4   <---------------AtSPL8 ---------------->AGL2    <------MYB46(1) <------ZmHOX2a(2) <---------ATHB51 <---------ANAC46 ------DOF2             <--------P  ------->GAMYB *TSS      --------->ICU4----------->HVH21  <-------   ttgccatatggagaagatgaaaccatgttggttatcaacgggagatcgaatgcagttttggaataatggctctgatgtgaagtgtacattctgctccaca  17599100                                                                                                  <--                                                                                                 ----         --------->ANAC58                                                                        <---         --------->ANAC46                                                             <---------GLK1(2) --ALFIN1--------->ANAC58   <---------ANAC46                                <-----------GT1      <---   tctattgaaacacgagaccacttgttcttctcgtgtagttatgcctcatcgatttggactgcaattgcaaagaatgttttacaacatcgattctcaacag  17599200                                                                    --------->ARR11(3)                                                              <---------ANAC55(2)                                                              --------->ANAC58          --------->YAB1                                      --------->ANAC58          ----------->GT1                                     --------->O2           <---------ZAT14    --------->ANAC58                                        <-----------GT1          <---------ZAT18    --------->ANAC58                                 <----------DOF2<---------ARR11(3) -------WOX13(1)                                     <---------DAG2<---------CCA1(2) --------->ZAT14 ----->ARR14(2)                             <---------ARR14(2)----------->GT1      --------->ZAT14 ------ARR14(2)                             --------->ARR14(2)--------->ANAC55(2)--------->ZAT6 ------GLK1(2)   <-----------GT1         ------>ZmHOX2a(2)<-----------HVH21   ------->GAMYB   attggcaggcaatagtgaattacatctcagagactcaaactgatcgaattcggagctttttgtcacgttatatcttccaactcacagtacacacggtttg  17599300                                                                                 <---------ATHB12                                                                                --------->ANAC58                                                                                --------->ANAC58                                                                            --------->ANAC58                                                                           <-------TEIL                 ------>NtERF2          --------->TGA2(2)                 --------->ARR14(1)                --------->ANAC46       <-----------TGA1                   --------->CCA1(2)                --------->ANAC58       <-----------HVH21                 <---------GLK1(2)                --------->ANAC58      --------->ANAC58                   <---------ARR14(2)             ======================HOX2a_HOX2a              <---------AtLEC2--------->ANAC58             ------>ZmHOX2a(2)        --------->ANAC58     <---------MYB46(3)  --------->WOX13(1)         --------->ICU4     <------ZmHOX2a(1)          <---------MYB46(3)--------->ARR14(2)     <---- <------ZmHOX2a(1)        --------->ALFIN1 <---------At4g35610      --------->MYB52(1)          <---- ===================HOX2a_HOX2a     <<<<<<<ZML2        --------->MYB52(2)--------->ARR11(1)  --------   gaaggagagaaatgatcgacgccatggtgaggagcctagaacgtcagccaatctcattagttggatggacaaacagattcgcaatcaactctccatcata  17599400                     <---------HSFB2a(2)                     --------->HSFB2a(2)                --------->At4g35610                ------>NtERF2                <---------At4g35610               <xxxxxxxxxxxxxxxxsmallRNA(s)               --------->RRTF1(3)               --------->RAP2.3(2)               --------->RAP2.6(2)               --------->DEAR3(1)              <xxxxxxxxxxxxxxxxsmallRNA(i)              --------->RAP2.3(1)            --------->DEAR3(1)           --------->DEAR3(2)          --------->ATERF1(1)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         xxxxxxxxxxxxxxxx>smallRNA(s)              --------->ANAC58    <-----------RAV1(2)    <xxxxxxxxxxxxxxxxsmallRNA(i) --------->ETT(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <---------GLK1(2) <---------ETT(2)   xxxxxxxxxxxxxxxx>smallRNA(i)   --------->ANAC58                <---------At4g35610 -----GLK1(2) <xxxxxxxxxxxxxxxxsmallRNA(s)   --------->HSFB2a(2)               <---------MYB52(1) -----ICU4xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------REM1(2)        <----------DOF2 ->YAB1<------ZmHOX2a(1)--------->MYB52(1)   <---------HSFB2a(2)     <---------At4g35610     --------   atctcgacaggagaccgccgctacgagaacggattacaagtctggttctcgacaaggctctagactctctctgctctttctgttaagctctcagattgta  17599500                                                                       <---------AHL20(2)                                                                       --------->AHL20(2)                                                                       <---------YAB1                                                                      --------->AHL20(1)                                                                      <---------AHL20(1)               <---------ATHB51                              <----------DOF2               <---------ATHB12                        <---------YAB1 --------->AHL20(2)               <---------AHL20(2)                 ----------->GT1    --------->YAB1      --------->YAB1                             --------->DAG2  <---------AHL20(2)     <---------YAB1     ------->GAMYB --------->At4g35610  ---------->ID1 <---------ANAC58     <---------At4g35610       ---------->DOF2  --------->AHL20(2)--------->AHL20(2) <---------ANAC58     --------->At4g35610  ----------->GT1<-----------GT1          <---------AHL20(2) --->GT1       --------->AHL20(2)     <---------At4g35610<<<<<<<<<<GT-3b     <-----------GT1   atttcttatcaaaacaaataattcaactcacataagattaagctgatgtaaaaagttatttttctttttaaatataatttgacattttattcaaaaaaaa  17599600  Previous    Next  AGI:  At1g47783.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05145.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446) Range:  from: 17599050    to: 17599463    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version