Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  <---------ALFIN1              --------->SPL7             --------->PCF2               <---------AHL20(2)            <-----------HVH21            --------->AHL20(2)           <---------ANAC58        ------>ZmHOX2a(1)                                      <---------ANAC58           <---------ANAC58    --------->ARR11(3)                                  --------->YAB1 <---------ANAC58             <---------GLK1(1)  --------->ANAC46         <----------DOF2 <---------ANAC58 <---------ANAC58             --------->GLK1(1)<-----------GT1---------->DOF2   --------->WOX13(1)   agtccgtgccattgcgtcccacattctaagtgatatcctgtcattaaatatacaacacattaacaaaagactaagactttaacaatcacaaggcttacga  17564900                                                                                     <---------YAB1                                                                               ------->GAMYB                                                                              --------->MYB46(3)                                                                             --------->At4g35610                                                                            ----------->RAV1(1)                                                                         --------->ANAC58                                                --------->WOX13(1)       --------->ANAC46                                  --------->TOE2(3)       --------->TOE2(3) --------->MYB52(1)  -----                   <---------WOX13(1)         <---------MYB52(1)         --------->ANAC58 --------->GLK1(2)      <------ZmHOX2a(1)        ----------->RAV1(1)<---------ATHB12     ---------->DOF2--------->YAB1-   acaatacaggattatgcacagattgaaatcaaacaacattaagactcagttaatcaagaaccctaatcgtcgaataagcaacagactatgagaatcgaac  17565000                                                                           <---------LBD16                                                                         --------->ARR14(2)                                                                         <-----------HVH21                                                                         <---------ARR14(2)                                                                    <-----------HVH21                                                                ------->TEIL                                                               ------>MYB46(1)                                                             <---------MYB52(2)                                                            --------->ANAC58                                                            --------->ANAC58  <---------MYB52(1)                --------->LBD16                --------->YAB1--------->DEAR3(1)        ---------->DOF2                      <---------TOE2(3) ------>MYB83<-------TEIL      <---------MYB59                   --------->ZAT6      --------->ANAC55(1)         <---------ANAC58  ----------->HVH21                <----------DOF2          --------->ANAC46 --------->LBD16 ---->MYB46(3)<---------LBD16   <---------ARR11(3)  <---------ZAT6  ------>MYB83        <---------ANAC46 ---------->RAV1(2)             --------->ARR11(3)----------->GT1   ------>MYB46(1)     <---------ANAC58   aaacctgacctaaagctccggtttggattgagagggtctttgactctaagaatagtgaaaacaccgaacctatcaggtccggtgttcatgacttgaatag  17565100                              <---------ZAT14                                  --------->ANAC58       ------->GAMYB          <---------ZAT18                                  --------->ANAC58      --------->ANAC46        --------->ZAT18                 <---------MYB46(3)      --------->ANAC58      <---------GLK1(1)         <--------P              <---------LBD16      --------->ANAC58      --------->GLK1(1)       <------MYB46(1)      --------->MYB46(3)        <-   <---------WRKY12     --------->ANAC46            <------MYB83   <---------ANAC46          --------   <---------WRKY38(1) <---------LBD16         <---------TOE2(3)   <---------ANAC58   <---------YAB1  <------ZmHOX2a(2)   --------->MYB52(1)       <---------TOE1(3)   <---------ANAC58 ----------->GT1<-   atcgatcaacgaaacccataagactcacggagttcacaagattgaatttaagcttggtagatagtggtttcttgaacaaacgcgcatggtgataaacagc  17565200                               ---------->DOF2                        --------->GLK1(2)                            <---------At4g35610<-------MYC2                       --------->ARR11(3)                  <-------GAMYB                ------->MYC2 --------DAG2          <---------GLK1(2)                  <---------ANAC58              <-------MYC3 ->ANAC46              <---------ARR11(3)                 <---------ANAC58 --------->LBD16     <----- ---------DOF2   --------->CCA1(2)          --------->CCA1(2)        --------->At4g35610------->MYC3   actttctccatcggagaagaaacgagattttgggaaagaagaagagatttgagaagcagtgcgttggattaagcttccgagtttgaagaacgtgttcatc  17565300                                          --------->ICU4                                     --------->RAP2.6(2)                                     ------>NtERF2                                    <---------DEAR3(1)                                    <---------ATERF1(2)                                    <---------RAP2.6(2)                       *TSS         --------->ATERF1(2)                     <---------TOE1(3)<------NtERF2               <---------RVE1(1)   <------NtERF2              <---------ARR11(3)   --------->RAP2.6(3)                                            <--            <---------TOE2(3)      --------->ATERF1(1)                --------->KAN4(2)           <-- <---------LBD16     <---------TOE2(3)------>NtERF2                 <---------YAB1                <-- ----At4g35610--------->ARR11(3) <---------DEAR3(1)    <------------CBF             <------ZmHOX2a(1)   tactggggaaatttgagatttttagggtttttaagttggcggccatttttgtttctaaattgctgatttgatcattcggaaacagaggaggtctctggtt  17565400                                                                             --------->ATHB12             <---------YAB1                                           --------->HSFB2a(2)    <------------CBF                                                  <---------HSFB2a(2)   --------->ATHB12                                                  ------>ZmHOX2a(2)  <---------YAB1                                                   <---------ARR14(2) -------ANAC46                           --------->ATHB51          --------->ARR14(2) -------ANAC58            <---------AHL20(2)                       --------->ARR11(3)              -- -------ANAC58 <---------ANAC46         --------->ICU4             <---------AGP1           ------>ZmHOX2a(2)   tcttgttattgggttttgagtgaaatatttgattctaggcccattatgggtttaggcccattcgatttggatctagaattgattgtaagagtgatcgtcg  17565500                                                                         --------->YAB1             -                                                                        <---------YAB1          <----                                                                   --------->ARR11(3)           <----                                                                   <---------ARR11(3)           -----                                   ----------->GT1             ---------->DOF2 --------->YAB1  ------                    <---------ARR11(3)                    <------ZmHOX2a(2)   <---------YAB1  <------        --------->ARR14(2)       ---------->DOF2         <---------ARR11(3) <---------ICU4 <---------YAB1 ------->MYB46(3)   --------->ARR11(3)            --------->AHL20(2)  <----------DOF2----------->RAV1(1)   aaccattccaaaacctcttggagatgttgagtttgtaaagtaacaaaatccattatatagatcacaaaagaactttgataatgaaaacaacatatgatta  17565600                                                                                           <-------MYC3                                                                                           ------->MYC4                                                                                           <-------MYC4                                                                                           -------->ABF1                                                                                           ------->MYC3                                                                                           <-------MYC2                                                                                          --------->O2                                                                                          --------->ANAC55(2)                                                                                          <---------TGA1a                                                                                          --------->TGA1a                                                                                          <---------O2                                                                                          <--------ABF1                                                                                          <---------ANAC55(2)                                                                                    <xxxxxxxxxxxxxxxx                                                                                   --------->YAB1                                                                                   <---------ICU4                                                                                 --------->ARR11(3)                                                                                 <---------ARR11(3)                                                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                xxxxxxxxxxxxxxxx>smallRNA(s)                                                   <---------ZAT14             xxxxxxxxxxxxxxxx>smallRNA(s)                                                   <-------TEIL              --------->ANAC46<-------                                               <---------------AtSPL8       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               --------->DAG2            <---------MYB52(2)------->MYC2                                              ---------->DOF2           <xxxxxxxxxxxxxxxxsmallRNA(i)                                             <---------AHL20(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                          <---------AHL20(2)         xxxxxxxxxxxxxxxx>smallRNA(s)     ------------------------>ANAC81     --------->AHL20(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---------->GT1                          <---------------AGL15  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -----AHL20(2)                          <---------YAB1        ======================================bZIP_DOF -----AHL20(1)                    --------->ARR11(3)          ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---->AHL20(1)--------->ANAC58    <---------ARR11(3)  --------->ANAC46 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --->AHL20(2) --------->ANAC58   --------->GLK1(1) --------->ZAT14  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) ---YAB1      ----------->GT1    <---------GLK1(1) --------->ZAT18 <-----------GT1<------ZmHOX2a(2)   tattgaaaaaaaaaacaagaaaaaaacaacatgtgatatcttattatataaagtacacggttttgaaagttactaactcacgagatcatgacacgtgtca  17565700                                                                                           >>>>>>>>>RAP2.2         xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             <---------ARR11(3)       ----------->HVH21                                                      --------->AHL20(2)<----    --------->ATHB12                                                          <---------AHL20(2)-----   <---------YAB1                      <----------DOF2    --------->YAB1     <---------AHL20(2) <---- xxxxxxxsmallRNA(si3)           --------->DAG2   ----------->GT1<-----------GT1         <---------CCA1(2) ----HVH21                     ---------->DOF2 ---------->DOF2  <---------AHL20(2) <-----------GT1   agtatatcattgacatgttgatatatgtcaaaaaaaagtttctttaaaaaaaagaaataaacatatttacatatactaatttatatttctatatctaaaa  17565800  Previous    Next  AGI:  At1g47720.1    Description:  OSB1 (ORGANELLAR SINGLE-STRANDED); single-stranded DNA binding. similar to OSB2/PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE9), single-stranded DNA binding [Arabidopsis thaliana] (TAIR:AT4G20010.1); similar to OSB2/PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE9), single-stranded DNA binding [Arabidopsis thaliana] (TAIR:AT4G20010.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO61280.1); contains InterPro domain Primosome PriB/single-strand DNA-binding; (InterPro:IPR000424); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027) Range:  from: 17563795    to: 17565323    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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