Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                                                                 ----                                                                                                 <---                                                 <---------YAB1                                 <----                                               <-----------GT1<---------TOE2(3)           <----------                                              <---------AHL20(2)                          --------->ARR11(3)        <---------YAB1    <---------AHL20(2)  --------->AHL20(1)                          <---------ARR11(3)    ------->TEIL     <---------AHL20(2)       --------->AHL20(2)                          --------->GLK1(2) ---->YAB1     <<<<<<<<<GATA-1               --------->AHL20(2)       <-----------GT1    --------->RVE1(1)   ataatgtattttgatttatctattgaattttttttgagtaattcaaattttattattcaaagtttatgttattcactacttaacacctaaaaaatctaat  17522900                             <---------AHL20(2)                       --------->ANAC55(2) --------YAB1          --------->ANAC55(1) ----->YAB1            <---------ANAC55(2)          --------->YAB1 ------ICU4            --------->ANAC46            <---------YAB1 -----ATHB12         <-----------GT1               <---------AHL20(2) -ARR10   --------->YAB1  ------->TEIL            --------->AHL20(2)       <---------ANAC46   catgtttcacaatgatatgttttatacgtatttttttggactacttaatgcatataatagttttttttttgtttatgcagtgttttgaaagagttaccca  17523000                                                                                                 ----                                                                                               ------                                                                                            ---------                               --------->YAB1                                               <--------                           <---------AHL20(2)                                             -----------                          --------->AHL20(2) ------->TEIL                       >>>>>>>>>>>>>>>>>LFY                <---------TGA2(1)       --------->CCA1(2)            <------MYB83       --------->ZAT14                <---------bZIP60(1)    <---------ARR14(2)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                --------->bZIP60(1)    --------->ARR14(2)            <------MYB46(1)    <---------ZAT14   aaaacaaaaatcgttgttatgtcatcgatttattcatatcagatatgtatattggtttagttgatataagttggtttagtagaaccattgtatagtgtaa  17523100                                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                    <----------DOF2                                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                ------->GAMYB                                                               <---------MYB52(2)                                                       <---------ARR11(3)                                                       --------->ARR14(2)     <---------CCA1(2)                                                       --------->ARR11(3)  <xxxxxxxxxxxxxxxxsmallRNA(i)                                 <---------AHL20(2)   --------->CCA1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 --------->AHL20(2)   --------->RVE1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             <---------YAB1      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------->GT1               <-----------GT1       --------->YAB1--------->MYB46(3)       <---------At4g35610 ---->DOF2            --------->YAB1           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    --------->LBD16 -->GT1               <--------HAHB4        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxx -ZAT6              --------->GLK1(2)    ---------->DOF2  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      x >GT1--------->ANAC46 <---------ICU4 --------->YAB1  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       -----   agtatataagacatttgtacagaatcattttacaattaatgagaaaagccttcataatatcttcaacaaacttttctctcatctctattccgctaatatg  17523200                                                                                                    *TSS                                                                                                    -                                                                                             --------                                                                   ---------->ID1            <-------TEIL   <xxxxxxxxxxxxxxxxsmallRNA(le3)                       --------->At4g35610                 ---------  ---------->DOF2                                       --------->ZAT2                     --------->ARR14(2) xxxxxxxxx>smallRNA(se3)                                <---------At4g35610                <---------ARR14(2) xxxxxxxxxxxxxxxxxx>smallRNA(si3)     ------>ZmHOX2a(2) <---------ZAT2                   --------->LBD16 ------>GT1               <------------CBF--------->GLK1(1)     <-------TEIL<---------MYB52(1)    ---   gtatcaaagccttccaagctcaaaactccattgttttcgatctgatttcttcattctcagctcaagttcgtcttcttcgttgttctcgctccagatacaa  17523300                                                                  <---------ICU4                                                                  --------->YAB1                                                        --------->ZAT2                      <---------ARR14(2)                <---------At4g35610  --------->MYB52(1)     <---------At4g35610                             <---------At4g35610    <---------ALFIN1     <---------ZAT2   --------->ARR14(2)         <---------ARR11(3)       <------ZmHOX2a(2)     --------->At4g35610                         <---------ARR14(2)       =========================== ---------->HVH21    --------->GLK1(1)   --------->LBD16<---------ZAT2   --------->ARR14(2)      ---- ---->CBF            <---------GLK1(1)  --------------->AtSPL3  <-----------ARR10 --------->ALFIN1 >CCA1(2) <---------ZAT6   --------->ANAC46      --------->ARR14(2)      <---------ARR14(2)------->TEIL ------>YAB1    <---------LBD16        <---------LBD16  --------->At4g35610--------->MYB46(3)    ====   tggtgacagctagagttactcggaaatccactcgatcgaagtccggtacaagttctgcagctcgaaaatcatcgcgatccaccggtgttgatgaatctcc  17523400                                                               --------->GLK1(2)                                                               <---------ARR14(2)                                                               --------->ARR14(2)                                                            --------->LBD16                                          --------->HSFB2a(2) <---------GLK1(2)               --------->ZAT14       --------->At4g35610  <---------LBD16         ------>ZmHOX2a(1)           <---------ZAT2      --------->MYB52(1)   ------>ZmHOX2a(2)             <---------HSFB2a(2)    <---------ALFIN1   =============HOX2a_HOX2a      --------->HSFB2a(2)    --------->DEAR3(1)  ==============HOX2a_HOX2a     <---------LBD16        --------->MYB46(3)  <------ZmHOX2a(2) --------->GLK1(1)<---------At4g35610--------->AtMYB61------>ZmHOX2a(2) ===HOX2a_HOX2a<---------ZAT14--------->ARR14(2)  --------->At4g35610--------->WRKY38(1) -->ZmHOX2a(1) <---------ZAT18<---------ARR14(2)  <---------At4g35610--------->WRKY12 =========HOX2a_HOX2a     <---------TOE1(2)     <---------WRKY38(1) <---------MYB52(1)   tccgatctctcctccagttcacaaatccaacgtttctggagcttcgcgagtcatcgcaccaccggaatccgttgatccgactcagtctcccttcttcttg  17523500              --------->LBD16        <------ZmHOX2a(2)       <---------ARR14(2)       --------->ARR11(3)    <---------ARR11(3)                     --------->HSFB2a(1)       --------->ARR14(2)    --------->ARR11(3)                     <---------HSFB2a(1)       <---------ARR11(3)    <-----------ARR10                      <-----------RAV1(1)------>ZmHOX2a(1)      <---------At4g35610   <---------CCA1(2)                 <---------WOX13(1)      --------->TOE2(3)   <---------ZAT18        --------->YAB1                    --------->ATHB12    <---------CCA1(2)   --------->ZAT18       <---------YAB1  --------->ICU4     <---------MYB46(3)<---------ANAC58   <---------ZAT14      --------->ARR11(3)                 <---------YAB1     <---------ANAC58     --   --------->ZAT14      <---------ARR11(3)               --------->YAB1     <---------YAB1       <---   catagtgcagatcatccaggtttgaatatcatatctcatcgtcttgatgaaacaaactatggtgattggaatgttgctatgcttatctccttagatgcta  17523600                                      <---------MYB52(1)                                     <-------GAMYB                                    <---------MYB46(3)                                    --------->MYB52(2)                <---------HSFB2a(2)                                   --------->SPL7                     --------->HSFB2a(2)                                 <-----------HVH21             <----------DOF2                                =============MYC_MYB     <-----------GT1                                --------->TGA1a        <---------HSFB2a(1)                        <---------HSFB2a(1)            <---------HSFC1(2)                        --------->HSFB2a(1)            --------->HSFC1(2)     ---------->DOF2 ------->YAB1--------->ATHB12   ==========================================bZIP_DOF ------TOE2(3)         <---------GLK1(1)               --------->HSFB2a(1) <-------TEIL   agaataaatctggatttattgatggaactctccctcgtccgttggaatcggataagaattttcgtctttggtctagatgcaaaagcatggtgaagtcttg  17523700                        ------>ZmHOX2a(2)                       ==============HOX2a_HOX2a                       <------ZmHOX2a(2)                      --------->ARR11(3)                      --------->ARR14(2)                      --------->AGP1                      <---------ARR11(3)                      <---------ARR14(2)                                 ------>ZmHOX2a(2)                     <---------CCA1(2)                             <---------ANAC46                  ------>ZmHOX2a(1)                  <---------ANAC58  --------->ARR11(3)                  =============HOX2a_HOX2a           <---------ANAC58  <---------ARR11(3)            ------->TEIL=============HOX2a_HOX2a   <---------YAB1  <---------ANAC58            --------->ARR14(2)              <---------YAB1         <---------ANAC55(2)            <---------ARR14(2)           --------->LBD16           --------->ANAC55(2)           <---------CCA1(2)  <------ZmHOX2a(1)  --------->YAB1    <---------ANAC58     <---------GLK1(1)<---------AGP1   <---------LBD16 <---------At4g35610   gttattgaattctgtatctcctcagatctataggagcattctccgtatgaatgatgcttctgatatatggcgtgatcttcacagtcgtttcaatgtgact  17523800  Previous    Next  AGI:  At1g47650.1    Description:  transposable element gene. copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea) Range:  from: 17523300    to: 17527397    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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