Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             <---------ARR11(3)    --------->GLK1(1)                                      --------->ARR11(3)                  <-----    <---------GLK1(1)                                     <---------CCA1(2)                    ------ ---------HSFB2a(2)                                       --------->GLK1(1)                 <-------- ----->ZmHOX2a(1)                                         <---------GLK1(1)                 <-------- -------->HSFB2a(2)      <---------ARR11(3)               <---------RVE1(1)            --------->TOE2(3) ---------HSFC1(1)       --------->ARR11(3)              <---------ARR14(2)            <---------DAG2 -------->HSFC1(1)   --------->ANAC55(2)       ---------->DOF2                 ------->GAMYB<--------   tcctagaaatccctattcgattcacatgatatttctgcatacactatcccaaagaaggggatatcttacgatgtgcgataaccctctagccttatcgtgc  17506800       ---------->DOF2  <---------------AGL15  --------------->AGL15                  --------->ANAC55(2) ----------------->AGL3                <-----------GT1 ========================================MADS_MADS     --------->YAB1 ----------------->AGL2         ----------->GT1        <---------ICU4 ----ZAT18               <---------------AGL15    --------->MYB46(3)       <---------TOE1(3) --->ZAT18              <-----------------AG     -------->P                <---------TOE2(3) -ANAC46                <-----------------AGL1  --------->WOX13(1)        ---------->DOF2       ----- -ANAC58            <---------ANAC58   <---------AHL20(2)                <---------AHL20(2)--------->DAG2 -ANAC58            <---------ANAC58--------->MYB52(2)<---------ATHB12  --------->AHL20(2)---------->DOF2   acatccacaaatagcacttcttgcttaacaaaattggttatttacttaatcaaccaatgataacttctcaacaatttaaagttttgctaacaaaaagtga  17506900                              --------->ANAC55(2)                              <---------ANAC58       --------->SPL7                              <---------ANAC55(2)   --------->ATERF1(1)                              <---------ANAC58      <---------TCP15(1)       ----------->GT1                             --------------->AtSPL8 --------->PCF5           <----------ID1                      --------->AHL20(2)            --------->PCF2        ----------->TGA1         ---------->DOF2    <-----------GT1        <-----------HVH21    <---------ICU4     <---------ETT(2) <---------AHL20(1)        --------->At4g35610     --------->YAB1   --------->REM1(2)  --------->AHL20(1)     <---------YAB1            --------->ICU4 --------->AHL20(2)  --------->ALFIN1 --------->YAB1         --------->ICU4        <----------DOF2  --------->AHL20(2)-- ----->DOF2     <---------CCA1(2)         <---------YAB1 <---------ALFIN1 <---------YAB1          <--   aagtgtgtagacaaagtcgtatcatatattatacgtgccatcttattattagcggtcccccactcactttaaaattatgacgaaaaaataaaacaatgtt  17507000                                       --------------->AGL15                                       <---------------AGL15                                      ----------------->AGL2                                      <-----------------AGL2                                      <-----------------AGL3                                --------->ARR14(2)                             <---------------AGL15                             --------------->AGL15                            <-----------------AG                            <-----------------AGL3                            <-----------------AGL1                            ----------------->AG                            <-----------------AGL2                                                  -                            ----------------->AGL2       <------ZmHOX2a(1)                          <          --------->ARR14(2)----------------->AGL3      <----------ID1                              -      <-------TEIL          ===========================MADS_MADS                          <---------YAB1 ------->YAB1               ===========================MADS_MADS                  <---------At4g35610 -------YAB1     --------->YAB1 <---------ARR14(2)    <---------ICU4           --------->ZAT14   ----   atcatatattcatatacactcatgagtcattccctatatggctatatttagcaaaataaggacaacatccacaagtttcacttcagaagattattttagt  17507100                                      <---------ANAC55(2)                                      <---------ANAC55(1)                                      <---------ANAC58                                      <---------bZIP60(2)                                      --------->TGA1a                                      ====================================MYC_MYB                                      <---------TGA1a        <---------MYB46(2)                                      --------->ANAC55(2)    <------------MYB.PH3(2)          --------->ANAC46            =====================bZIP_DOF       --------->ZAT18                <---------ANAC46       <---------MYB111(2)       <---------ZAT18       <-----------GT1    <----------DOF2   --------->DAG2         --------->YAB1      <---------TOE1(2)  ---------->DOF2        --------->ICU4      ------>ZmHOX2a(1)  ==============================================bZIP_DOF<---------ANAC58 -------->YAB1      --------->ANAC58  --------->O2  <------------CBF ---------AHL20(2)  --------->ANAC58  <---------O2<---------YAB1      --------->YAB1  --------->ANAC46 -------->AHL20(2)--------->MYB52(1)  <---------ANAC58  <---------ANAC58         <---------MYB111(1) ----->YAB1  ----------->RAV1(1)    <-----------GT1--------->ATHB12  <---------YAB1-------->P       -   aataaaaagtggacacaacaaaacgaaattataacttgttacgtgtcctactttcattgcttaactaccttcttataatgcaaactaccctcaaactcat  17507200                                                                                                -----                                                                                              <------                                                                                              -------                                                                                            <--------                                                                                            ------->GAMYB                                                                                          -------->P                                                                                         ------>MYB46(1)                                                                                         ------>MYB83                                                                                        ----------->HVH21                                                                                       --------->AtMYB61                                                                                       <---------MYB46(2)                                                                                       <---------MYB59                                                                                   ----------->HVH21                                                                                  ------>ZmHOX2a(2)                     <----------DOF2                                              --------->DEAR3(2)             <---------ZAT6                                                      <------ZmHOX2a(2)<--             ----------->GT1                                                    <---------ARR14(2)---       <---------LBD16 *TSS ------->TEIL                            --------->AtMYB61  <---------MYB111(1) ----->ZmHOX2a(1) <-----------GT1                             <-----------GT1   --------->ARR14(2)<--   tcctccatcttcggagtgtttaactttctgaacctcttaagaaactctaacaagactctaaattttacgaccaaaatgcctcgatccgacctaacccgcg  17507300                                                                                            ---------                                                                                            <--------                                                                           <---------ARR11(3)                                                                         <---------ATHB12  --------->ARR14(2)                                                                     --------->MYB46(3)    <---------ARR14(2)                                                                     <---------MYB52(2)--------->ANAC58                                                                   ----------->RAV1(1) --------->ANAC55(2)                                                                 <------NtERF2         --------->ANAC46                                                                --------->RAP2.6(2)    --------->ANAC58 ---->LBD16                                  <-----------HVH21<---------At4g35610     <---------LBD16 ---LBD16                                   <------MYB46(1)   --------->At4g35610   <---------REM1(2) -->LBD16               <------NtERF2       ----------->GT1  --------->MYB52(2)     <---------ZAT14 < -LBD16               --------->ETT(1)      <------MYB83     <---------DOF5.7(2)    --------->ZAT14 - -------GLK1(2)       <---------DEAR3(1)   --------->MYB59 --------->DOF5.7(2)<----------DOF2       < ------>ARR14(2)    <-----------HVH21    <------ZmHOX2a(1) <---------MYB52(1)------>ZmHOX2a(2)      - -------ARR14(2)----------->RAV1(2) <---------HSFB2a(2)   <-----------HVH21--------->ARR11(3)------>ZmHOX2a(2)   gatactctgatggagacagcctggtcggagaaattgtccgagaggaaggtcacatttactcgttagcggcaacaaatgatcttttgtacacgggatcgga  17507400    <-----------GT1                                                ---------->DOF2 <---------ICU4                                                <---------MYB46(3) <--------HAHB4                                                <------MYB46(1) --------->ATHB51                                              ----------->GT1 <--------ATHB1                              --------->AHL20(2)<------MYB83 --------->YAB1                           ----------->GT1    <---------WOX13(1) >At4g35610<---------TOE1(3)             <------MYB83       <---------ARR14(2) -At4g35610<---------TOE2(3)             <------MYB46(1)    --------->ARR14(2) ---------ATHB51                     <---------ANAC46   <---------LBD16                <------NtERF2 -------->ICU4                     --------->ZAT14      <---------At4g35610   --------->YAB1   <----- ---------ATHB12 ----------->GT1   <---------ZAT14   ---------->DOF2--------->DAG2   <---------LBD16 -------->AHL20(2)      --------->TOE2(3)----------->GT1--------->At4g35610  <---------ZAT6    <-----   caataattacattagggtttggaaaaacttaaacgagtttagtgggtttaaatcgaacagcggattggttaaagcgatagtgataagtcgggaggctaag  17507500                                                                            <------NtERF2                                                                            <---------MYB52(1)                                                                           ------>NtERF2                                                                           --------->LBD16                                                                          <---------LBD16                                                                          <---------ANAC46                                                                      <-------MYC2                                                                      ------->MYC3                                                                      ------->MYC2                            --------->LBD16                           <-------MYC3                           <---------ANAC46                          --------->ANAC58 ------>NtERF2                          <---------LBD16                       <---------REM1(2)     --------->LBD16                         --------->ARR14(1)                     <---------ZAT14     --------->RAP2.6(3)                         <------ZmHOX2a(2)                      <---------ZAT18     <---------LBD16                         --------->CCA1(2)                      --------->ZAT14 <---------ANAC58                        --------->AGP1                          --------->ZAT18 <---------ANAC58                        --------->ARR14(2)                    --------->ZAT14  --------->At4g35610                        --------->ARR11(3)                    <---------ZAT14  --------->ZAT2       <-----------HVH21<---------ARR11(3)              --------->LBD16  <------NtERF2<---------RAP2.6(3)    <---------ANAC58    --------->ARR11(1)             --------->ANAC46  <---------LBD16 <----------DOF2    --------->ANAC55(2) <---------ARR14(2)            --------->TOE1(2) ------>NtERF2--------->ATERF1(2)    <---------ANAC58  ----------->ARR10               --------->TOE2(2)--------->ANAC46<------NtERF2   <---------LBD16 --------->At5g28300                <---------LBD16--------->ANAC46<---------ATERF1(2)  <-----------GT1 ----------->GT1                 ---------->DOF2    --------->ANAC58<---------RAP2.6(2) ----TOE1(3)    --------->RAP2.6(3)        --------->TOE1(1)  <---------ZAT18  <---------At4g35610 ----TOE2(3)<---------ICU4------>ZmHOX2a(2)--------->TOE2(1)  --------->ZAT18  <---------ZAT2--------   gtatttacgggtcatcaagacggtaagatccgggtttggaaaacctcgtccaaaaacccgcgagtgtacacacgcgccgggagcttgccggctttgaaag  17507600                                                          <---------DAG2                                                          <----------DOF2                                                      --------->ANAC58                                                      --------->ANAC58                                                     --------->SPL1(2)                                                    <---------SPL1(1)                                                    --------->SPL1(1)                  <---------ANAC55(1)                                                   <---------SPL7                      <---------ANAC46                                                  <---------ANAC46                     <---------ANAC58                                                  <---------ANAC58               <------NtERF2                                                  <---------ANAC58    <---------ATHB12 --------->ANAC55(2)                                                 --------------->AtSPL3         ------>NtERF2   -----                                                 <---------------AtSPL8        <---------DEAR3(1)   -             <---------ANAC46                 --------->ARR11(3)     --------->ANAC58  <---------ANAC55(2)             ----------->GT1                  <---------ARR11(3)  <------ZmHOX2a(2) <---------MYB52(1)           --------->ZAT18          <---------AtMYB61--------->SPL7  --------->ANAC58  <---------ANAC58           <---------ZAT14       --------->ALFIN1<---------------AtSPL3        --------->ANAC46 <---- -->DOF2   --------->ZAT14     <---------ANAC46 <------------------SPL14       --------->DEAR3(1)  --   acgttttgaagagttcagtgaaaccgagtaactacgtggaggtgagaagatgtcgtacggccttatggatcaagcattccgacgccgtttcgtgtttgag  17507700  Previous    Next  AGI:  At1g47610.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G26490.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61249.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61238.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 17507223    to: 17508404    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version