Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         <---------MYB46(3)                                                     >>>>>>>>>ARR2                                                     >>>>>>>>>ARR1                                                     >>>>>>>>>ARR1                                                     >>>>>>>>>ARR2                                                    <------ZmHOX2a(1)     <---------GLK1(1)           <---------YAB1    <---------YAB1                  <----------DOF2     --------->GLK1(1) --------->ZAT6    <---------AHL20(2)                       <---------ICU4    <---------GLK1(1)--------->YAB1     --------->AHL20(2)          <----------DOF2--------->TOE2(3)   <------ZmHOX2a(1)<---------YAB1--------->YAB1  <---------TOE2(3) ------>ZmHOX2a(1)<---------AHL20(2) --->TOE2(3)     <---------AHL20(2)     <---------AHL20(2)      ------->TEIL  <---------AHL20(2)  <--   taataggaatccctaacattttataatactaaattttgataattttatagtttaggattgttgatgaatcctttcagtttttaatctttaatggtggaat  17491500                                                                    <---------YAB1                                                                  --------->YAB1                                                                  <--------HAHB4                                                                  -------->ATHB1                                                                  -------->HAHB4                                                                  --------->ATHB51                                     <---------TOE2(3)            <---------ICU4                               <---------YAB1                    <---------ATHB51                              --------->ARR11(3)                 --------->ICU4                              <---------AHL20(1)                 <---------YAB1                              <---------ARR11(3)               --------->YAB1                              --------->AHL20(1)               <--------ATHB1                            --------->ARR11(3)                 --------->ATHB51                            <---------AHL20(1)                 -------->HAHB4                         --------->AHL20(2)  <---------AHL20(2)<---------ICU4         ---------->DOF2                         <---------AHL20(2) <---------AHL20(2) <--------HAHB4        --------->YAB1                     --------->AHL20(2)     --------->AHL20(2)--------->ICU4   <---------ICU4           <---------ANAC58 <---------ARR11(3)                <---------ATHB51--------->ICU4           <---------ANAC58 --------->AHL20(1)                <---------YAB1--------->YAB1  <---------At4g35610<---------AHL20(2)     <---------AHL20(1)--------->AHL20(2)    <---------YAB1 <- --------DOF2       --------->AHL20(2)  --------->ICU4   --------->TOE2(3) --------->AHL20(2) -------   ctttagatgagtttcttacaaatttaaaaaaatatttttgagataattaatttgataaaacttaataattattacaaataaaaattatcaaagtgccaaa  17491600                                                                <---------ANAC46                 --------->At5g28300                            <---------ANAC58             <---------ANAC46                              <-----------RAV1(1)--------->HSFC1(2)        <---------At4g35610--------->At4g35610      --------->ETT(2)          <---------HSFB2a(1)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)         --------->HSFB2a(2)        <---------HSFC1(2)     <---------At4g35610   <---------At4g35610     <---------HSFB2a(2)  --------->At4g35610    ------ xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)            <XXXXXXXXXXXXXXXXXXXMIR158B   --------->HSFB2a(1) ---------DOF2  ----------->GT1                <----------DOF2  <---------ANAC58               <----- --->DOF2    <---------bZIP60(2)xxxxxxxxxxxxxxxx>smallRNA(i) <---------RAP2.6(2)        --------->CCA1(2)   gcttttttgctgatgatgtggtaaatctctgctaacacagtttgaaatgctttctcgacatttgtggcttcaagagcagaagtttccaagatagagagac  17491700               <---------ZAT6               --------->ALFIN1                                                   --------->YAB1             <---------ANAC46                                                  <---------ICU4        --------->ZAT2                                                        --------->ICU4        ----------->RAV1(2)                                                   <---------YAB1        <---------At4g35610             --------->GLK1(1)                   <---------ICU4        --------->At4g35610     <---------At4g35610                        --------->ICU4           -        <---------ZAT2          --------->At4g35610           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) <-      <-----------RAV1(2)   --------->TOE2(3)                <----------DOF2--------->YAB1       <--- --->ARR11(3)<---------ANAC58   <---------ZAT2       <---------TOE2(3)     <---------YAB1     ------- ----ARR11(3)<---------ANAC58------>ZmHOX2a(1)    <---------ANAC46   ------>ZmHOX2a(1)        <------   cttctgtctcagctggagtgtgaccatcttcctcagctactgatttcaagtggtttagattagctttgttcctagttatcatgatcacaatgttggaatc  17491800                                                                                                    <                         --------->TOE2(3)                                                *TSS     <-                         <---------DAG2                                                 <---------DOF5.7(2)                         --------->TOE1(3)                                              ---------->DOF2                       ------>NtERF2                                                  <---------MYB52(1)                --------->ANAC46                                                      --------->DOF5.7(2)                --------->O2                                <-----------HVH21        --------->At5g28300        <---------MYB52(1)                                 <---------bZIP60(1)   <---------ALFIN1  <- <---------AtMYB61    <---------ALFIN1                     --------->bZIP60(1)  <---------MYB55(2) <- -------->SPL7  <---------O2               --------->ARR11(3)                   --------->MYB46(3)--- --------MYB52(1)    --------->MYB46(3)    <---------ARR11(3)                 --------->PCF2     <--- ------ANAC55(2)<---------ANAC55(2)    ---------->DOF2     <---------TGA2(1)--------->ZAT18  <------- -->ARR14(2)    --------->ANAC55(2) <-----------HVH21      --------->TGA2(1)<---------ZAT18  <------- ---ARR14(2) <---------ZAT18   --------->ARR11(3) <----------DOF2          --------->ALFIN1  <-------   cgtatggtctcttagttcacgtagccaccttaagacattgtcaaaggtctgtcttttggtgatgtcatagacaagaagtgctcccaccgttaaagtcgtg  17491900                                                                                   --------->ANAC46                                                                                 <---------ALFIN1                                                                                 --------->ANAC46   ------->GAMYB                                                                ------->GAMYB  --------->MYB46(3)                              ----------->RAV1(1)          <---------ALFIN1  <---------MYB52(2)                       ------->GAMYB                     ----------->RAV1(1) ---------DOF5.7(2)                     --------->MYB52(1)                 --------->LBD16 --------WRKY12                      --------->ANAC46                     <---------ANAC55(2) --------WRKY38(1)                   --------->ANAC58                     --------->ANAC46 --------WRKY45                      --------->ANAC58                     <---------ANAC58 ------>WRKY18(1)             --------------->AGL15                       --------->ANAC55(2) --------HVH21               ----------------->AGL3                       <---------ANAC58 --ANAC46                ---------->DOF2----------->RAV1(1)              <---------LBD16 --ANAC58    ---------->DOF2 ----------------->AGL2                   <------------CBF --ANAC58   <---------AHL20(2)<---------------AGL15   ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   gtcaacgaccctattaaaagaatagcacaaagccaaaataagcaacagaacacaacaaaagcagaaactagaaattgcgcaacacacctcattccaaaat  17492000                 <-----------ARR10                 <---------ARR14(2)                 <---------ARR11(3)                 <---------ARR14(3)                 --------->ARR14(3)                 --------->ARR14(2)                 --------->ARR11(3)                          --------->ANAC58           --------->ANAC58                                  --------->ANAC58           --------->ANAC58                   <---------YAB1 --------->ANAC46          --------->WOX13(1)           --------->YAB1--------->AtLEC2       <-----------HVH21        <-----------GT1   <-------TEIL--------->LBD16  --------->YAB1       -  <---------ATHB12    --------->ANAC46<---------ATHB12      <---------LBD16 --------->YAB1         --   ccaaatcaatgtcactcaatatcttcgccattttagaccattcatgctctgattcatacaaacccgcaagtttttctctaataacaagtgtctgcaatta  17492100                                                            ------>ZmHOX2a(1)                                                       --------->HSFB2a(1)                            <---------YAB1  --------------->AGL15                            <---------TOE2(3)    ---------->DOF2                           <-----------GT1  --------->HSFB2a(2)                       <----------DOF2                      <---------YAB1        <---------HSFB2a(2)          <---------ARR11(3)                      --------->ICU4        <---------------AGL15        --------->ARR11(3)          ----------->GT1<---------YAB1<---------ZAT2  <---------HSFB2a(1)           <---------ANAC58 -------->AtMYB61    --------->TOE2(3) --------->At4g35610 --------->TOE2(3)         <---------ANAC58 ------->ANAC46   ----------->RAV1(1)  <---------At4g35610 --------->TOE1(3)  ---------->DOF2   caccaaaacaaattgtaaaacaacattattaacatagtctcagctactcgaaaaagaacatccttagtaaacaaacatctcaaagtagctttcagagtag  17492200                                         <---------YAB1                                       --------->YAB1                   <----------DOF2    <---------YAB1                ------->TEIL  <---------ANAC58                              <----------DOF2               <---------CCA1(2)  --------->ANAC55(2)  --------->MYB52(1)------->TEIL     <---------ALFIN1         <---------ANAC58 <---------YAB1           <---------CCA1(2)      ------    --------->MYB46(3)       --------->At4g35610--------->YAB1   --------->TOE2(3)           <-------   ttttcaaacaccctaatgtatctttcagagtagcttaagtatcatcactatcatacaaaacagagaaccctaatgtatctttctcaaatcccaattcaca  17492300                               --------->TOE1(3)                               --------->TOE2(3)                            --------->TOE2(3) --------->TOE1(3)          <-----------GT1                                 --------->TOE1(3) --------->TOE2(3)     --------->AHL20(2)                  --------->MYB52(1)      --------->DAG2 --->ANAC46        <---------AHL20(2)         --------->ARR14(2)       --------->YAB1   --------->At4g35610 ----GT1           --------->AHL20(2)         <---------ARR14(2)---------->DOF2   ---------->DOF2 ---   aaaccctaaacttgataacatttaaaaatataaccctaactaatcgtcgatctacagaggcaaacagaaagaatcataccttcaaaaagcagttggagta  17492400  Previous    Next  AGI:  At1g47595.1    Description:  pseudogene, similar to Ras-related protein Rab11C., blastp match of 77% identity and 2.3e-33 P-value to SP|Q40193|R11C_LOTJA Ras-related protein Rab11C. {Lotus japonicus} Range:  from: 17491495    to: 17491890    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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