Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               <---------HSFB2a(1)      <------MYB83                                  ----------->RAV1(2)      <------MYB46(1)                               <---------ANAC58        <---------At4g35610    <---------MYB52(1)             <---------GLK1(2)<---------ANAC58        --------->At4g35610   <-------GAMYB                   --------->ARR11(3)        --------->HSFB2a(1)   --------->ARR11(3)   <---------At4g35610             <---------ARR14(2)<---------LBD16 <---------ARR14(2) ---->DOF2                    ------>ZmHOX2a(1)     <---------ANAC46 --------->ARR14(2)    <---------GLK1(1)   agttcagttggtttactctctatgttgatgtccttcagattttgagaaacaattgcctggggaagattgcagatttgatgctgaagattatgggtttctc  17480700                                                                      <---------ANAC46                                                                      <---------ANAC58                                                                      <---------ANAC58                                               <---------MYB46(3)  <---------MYB52(1)                                              <---------AtMYB61   <-------GAMYB                                             <---------MYB52(1)  <---------ANAC58                                            --------->LBD16      --------->MYB52(2)                                          <---------LBD16        <---------ANAC58                                        <---------ARR14(2)    <----------DOF2                                        --------->ARR14(2)   <----------DOF2                                       <----------DOF2  --------->At4g35610              ------->TEIL    --------->ARR11(3)        <---------At4g35610                  <------- --------->AHL20(2)    <---------ANAC58<---------ARR14(2)    <---------DAG2              ------->TEIL <---------AHL20(2)    <---------ANAC58--------->ARR14(2)--------->ATERF1(1)            --------->MYB52(1)   taattaaaaaccgatggacttctgtgcttgaagctctagcggtttccggtggttttggaggtgcctttcgttgcttatcaaatcgacgatgaacggcgat  17480800                                                                                                   --                 ------>ZmHOX2a(1)                                                               ----                 <---------LBD16                                                      <---------AHL20(2)          <---------At4g35610                                                        <---------AHL20(2)          --------->At4g35610                                                        --------->AHL20(2)      <-----------TGA1                ------>NtERF2                                --------->TOE2(3)      <-----------HVH21           --------->ETT(2)                             <----------DOF2   <---     --------->ANAC46        <----------DOF2             <------ZmHOX2a(1) <---------ZAT18       ---- --DEAR3(1)  <-----------HVH21    <---------ETT(2) ------>ZmHOX2a(1)   <-----------RAV1(1)       <---   gacttatgcgtcatctgtcctcgggtctcaactttgtcgacgactattacttccttacaggaattagttttctctggtgggctttcattaatttgggcat  17480900        --------->TOE1(3)                                     <---------AHL20(2)        --------->TOE2(3)                                    --------->AHL20(1)  <---------------AtSPL8    ---------->DOF2                                          <---------AHL20(1)  --------------->AtSPL8 --------->GT1                                    >>>>>>>>>>>>>>>>>LFY           --------->DAG2 --->MYC2                  ------->TEIL        --------->HSFC1(2)               ---------->DOF2 ----MYC2       <---------ANAC46               <---------HSFC1(2)          --------------->AGL15 --->MYC3    <-----------RAV1(1)               --------->HSFB2a(1)      --------->ZAT6         <----- ----MYC3   <---------TOE2(3)                  <---------HSFB2a(1)    ----------->RAV1(1)   ---------   gtgtttaaaagcttaatgttgtgaagatggatgtcaaaatgtaagtggaagtttccactgttatatattttgcaacactagataaagtacaatacttatg  17481000                 <---------YAB1                 ----------->TBP               --------->YAB1               --------->AHL20(2)              --------->ICU4              <---------YAB1            --------->YAB1            <---------ICU4           <---------AHL20(2)           <---------ATHB51           --------->AHL20(2)           --------->ICU4                                                                      *TSS       --------->AHL20(2)        --------->LBD16                                           --------->ARR14(2)     --------->AHL20(2)        <---------LBD16                                             <---------ARR14(2) --------->AHL20(2)---------->DOF2                            <---------GLK1(2)    <---------ARR14(2) ----YAB1--------->YAB1     <-----------GT1             ---------->DOF2            --------->ARR14(2) >ICU4--------->YAB1   ----------->GT1          ----------->GT1    --------->TOE2(3)      <---------CCA1(2)   agaaaaaataaaaataattataaaagcgtttaacccggtttagttcgattcggtttaataaagagattatctcaaaacaaaacaaaattcgcatatcgcc  17481100                                                 ----------->RAV1(1)                                                 ------------>AtMYB77                  ------->TEIL               --------->ZAT18                  <-------TEIL              <---------ANAC58                  --------->SPL7            <---------ANAC58                ------>ZmHOX2a(1)                --------->TOE2(2)           <---------ANAC46               ==========================                <---------SPL7              --------->ALFIN1               --------->TOE2(3)               <---------ANAC58           <---------ANAC46                 --------------->AGL15               <---------ANAC58           --------->ALFIN1            <----------DOF2              <---------------AtSPL3     <---------MYB52(1)          <---------DAG2               ---              --------------->AtSPL3    --------->LBD16           <-----------GT1                <---              <---------------AtSPL8--------->GLK1(2)           --------->AHL20(2)    <---------AHL20(2)             <------------------SPL14 <---------LBD16          <---------ATHB12      --------->YAB1             <---------DOF5.7(2) --------->ARR11(3)          --------->WOX13(1)     --------->AHL20(2)           --------->DOF5.7(2)   <---------ARR11(3)      --------->REM1(1) --------->TOE1(3)   ------   gattattcaaatcggtaacgtacggtctcatttgagatattccggtgtgtgcaacagttacaccaattaaaccttttccttaaaaaataaaaatggagag  17481200                          <---------------AGL15                         ----------------->AGL2                         <-----------------AGL1                         ----------------->AGL1--------->ZAT6   --------->YAB1                    ---------->DOF2           <---------ATHB12 <---------ATHB12 =========================================MADS_MADS       --------->HSFB2a(2)              <--------- ------>GLK1(2)  --------->TOE2(3)    <---------ANAC58    --------->HSFC1(1) --------->HSFB2a(2) ------GLK1(2)   --------->TOE1(3)    <---------ANAC58    <---------HSFB2a(2)<---------HSFB2a(2) ----->ARR10  --------->GLK1(1)   <------ZmHOX2a(1)   <----------DOF2      ------>ZmHOX2a(1)<--------   attcttctacagagagaaaccctaaagaccaaaataggaatcgtgcctatcactctctttctcgaatcatcttcttcctcgcgaagagacttcctttagt  17481300                                                                       --------->ARR14(2)                                                                       <---------ARR14(2)                                                                     --------->LBD16                                                                    <---------ANAC46                                                                   <------NtERF2                                                                   <---------LBD16                                                                  <---------ATERF1(1)                                                                  <---------RAP2.3(1)                                                                  ------>NtERF2                                                                 <---------DEAR3(1)                                                                 <---------RAP2.3(2)                                                                 <---------RAP2.3(3)                                                               ------>NtERF2                                                              --------->DEAR3(1)                                                        ----------->HVH21                                                        ----------->TGA1                                                      <---------At4g35610        --------->ARR14(2)                                                      --------->At4g35610        <---------ARR14(2)                              <----------DOF2        <---------TOE1(1)<------NtERF2                    --------->LBD16           --------->LBD16 ----------->HVH21 --------->GLK1(1) <-------GAMYB     <---------ANAC46          --------->HSFB2a(2) <---------RRTF1(3) -DOF2<---------GLK1(1)     ------->TEIL     <---------HSFB2a(2)--------->ATERF1(1) -MYB52(1)        <---------LBD16            <---------HSFC1(1)<---------ATERF1(1)   ------>ZmHOX2a(1)   ttctgttgaaatctcttatttgcggtgatgaactttgaaatttgattccagaagtccgatgacgacgacggcggaaactgggcaatcctctggttcgaaa  17481400                                                                                  <---------YAB1                                                                              <---------ARR14(2)                                                                              --------->ARR14(2)             <---------AtLEC2                            <---------ICU4 <---------WOX13(1)        <---------YAB1                             <---------ANAC58    <---------ANAC58      --------->YAB1                               <---------ANAC58    <---------ANAC58     <---------YAB1                           <-----------RAV1(1)     --------->ATHB12     --------->ICU4 <---------MYB59       <---------ANAC58           <---------AHL20(2)   <---------At4g35610      <-----------HVH21 <---------AtMYB61     <---------WOX13(1)   --------->YAB1  ----------------->AGL1 <---------ANAC58 <---------CCA1(2)  <---------GLK1(2)   ccctctgatgatgatgcatgggccaaactgggtcagtcttgtttccttgtggtgcttactcatttctctaattgattgcaaattctcatttttagttcta  17481500                                                                                    --------->GLK1(2)                                                                                   <---------ARR14(2)                                                                                   <---------GLK1(2)                                                                         --------->HSFB2a(2)              --------->AHL20(2)                                         <---------HSFB2a(2)              <---------AHL20(2)                                       ------>ZmHOX2a(1)            <----------DOF2                <---------ICU4          <---------ARR14(2)            <---      --------->ARR14(2)                  --------->ICU4           --------->ARR14(2)    ----------->HVH21  <---------TOE2(3)  <---------TOE2(3)  --------->YAB1     --------->ARR14(2)      --------->ARR14(2)   aattgacgaattcactttaatttgagatttattgtgaaactttcataatgaattctatacaaatttgcagttcctctggacaccagattctctgacattg  17481600  Previous    Next  AGI:  At1g47570.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to Os11g0175500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065879.1); similar to At1g47570 [Oryza sativa (japonica cultivar-group)] (GB:AAX95796.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 17481095    to: 17485942    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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