Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              ------->TEIL           <---------CCA1(2)     <---------ATHB12   ------>MYB46(1)   ------>MYB83 <---------MYB59                                                      --------->ANAC58       -------- <---------MYB111(1)                                                  --------->ANAC58       <------- -------->ANAC55(2)                    <-----------RAV1(2)            --------->ANAC46      <-------- ---------ANAC55(2)            ---------->DOF2                    <---------ANAC58     --------->ATHB12 -------->ANAC46            --------->YAB1<------ZmHOX2a(1)       <---------ANAC58   <----------DOF2 -------->ANAC55(1)    <-------TEIL <---------GLK1(1)  XXXXXXXXXXXXXXXXXXXX>MIR822------->TEIL------>ZmHOX2a(2)   acacctaatcaatgtatctacaaaatgcattcgtaaagaaatcaggaggctcaccacgagaaacacttgcatacgaaatgaacgagcctttattgatctg  17399300                                                     <---------REM1(2)                  <---------SPL7                   --------->bZIP60(2)         --------->YAB1      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <---------ATHB12   ----------->RAV1(1)     ----------->HVH21       ------>MYB46(1)   ------>NtERF2         ------>NtERF2                                     >>>>       ------>MYB83 --------->SPL7          --------->At4g35610                                  ---- ->At4g35610     <---------ANAC58           <---------At4g35610                               ------- --At4g35610     <---------ANAC58       <---------SPL7              --------->TOE2(3)---------->DOF2 -AGP1--------->WOX13(1)--------->PCF2  <-----------HVH21        --------->ANAC46  <---------ATHB12   aacatcaccaatcacagaagcgttcggagccacagtaatcaacgtccgatgcctcgacactgaaaacaaaccacaaatttctcaaatcaaagttttcaat  17399400                              --------->ATHB12                              -------->ATHB1                              --------->ATHB51                             <---------YAB1                             <---------AHL20(2)                                             <--------                             --------->ICU4                                                 ---------                             <---------ATHB51               --------->ARR14(2)              <--------                        ----------->GT1                     --------->ARR11(3)              <--------                     ---------->DOF2                        <---------ARR14(2)              ---------             --------->HSFB2a(2)                            <---------AGP1             --------->ALFIN1 >>>>>RAP2.2 --------->HSFC1(1)                       <---------GLK1(2)   ---------->DOF2   --------- ----->TOE2(3)     --------->YAB1                 <-------TEIL------>ZmHOX2a(2)  --------->ANAC58 -->WOX13(1) <---------HSFB2a(2)                 --------->CCA1(2)   <-------TEIL--------->ANAC58   ctaaactacaaatttctcgaatcaaaaggaaattattgatacaaatgagagatacagaattggatctagggttcaatagagcgaagcaagtggaagctta  17399500                                                                     <---------ARR14(2)                      <---------ANAC58              <---------ANAC58 ------->TEIL      <---------HSFB2a(2)                     <---------ANAC58       --------->GLK1(2)      --------->HSFB2a(2)                     <---------ANAC58    --------->ANAC46 --------->HSFC1(2)   <---------ANAC58       --------->ZAT2       --------->ANAC58 <---------HSFC1(2)   <---------ANAC46       <---------ZAT2       --------->ANAC58 -At4g35610       <---------ANAC58     ------>MYB46(1)           --------->LBD16 >HSFB2a(1)       <---------ANAC58     ------>MYB83 <---------ANAC58 --------->ARR14(2) -HSFB2a(1)      <------NtERF2        --------->MYB52(1)     <---------ARR14(2) -HSFC1(2)     <---------RAP2.6(2)   --------->AtMYB61       --------->ARR14(2) --------->ANAC46 >At4g35610 --------->ALFIN1        --------->DEAR3(2)      --------->At4g35610 ----------->RAV1(1) >HSFC1(2)  <---------AtMYB61       --------->MYB46(3)     <---------MYB46(3)  --------->MYB46(3)   cgatgtttctcgatgtggtggcttccttgaagaagagaaccaacgcgagcttgggcttgggcagttccacgaatccgattacccacagtgtgaatcgctc  17399600                                                                                                  <--                                                                                                  <--                                                                                               ------                                                                                               *TSS                                                                                              <------ZmHOX2a(2)                                                                                         --------->ANAC46                                                                                        ------>MYB83                                                                                        ------>MYB46(1)                                                                                       --------->MYB52(1)                                                                  <---------ANAC58    --------->AtMYB61  <---------TOE1(2)     <-----------GT1                           <---------ANAC58   --------->DEAR3(2) ------>ZmHOX2a(1)<---------YAB1    ---------->DOF2             --------->ARR11(3)   --------->MYB46(3)   gtcctagggttcccatttttctgatttttccgattacccaaagagagagacagagagggacagagagagcttgttttgaagaagagaaccaacgcgatcg  17399700                                                                                      <---------AHL20(2)           <---------MYB52(1)                                                        --------->AHL20(2)          <-------GAMYB --------->WRKY12                                           ------>MYB83         <---------MYB46(3)                          ------>MYB46(1)               ------>MYB46(1)         --------->MYB52(2)      --------->ANAC46    ------>MYB83          --------->TOE2(3)       <---------MYB52(1)<---------WRKY18(1)         --------->MYB52(1)    --------->TOE1(3) --------DOF2           --------->WRKY38(1)        --------->AtMYB61      --------->At4g35610 -------DAG2         <---------MYB46(3)            <---------MYB59       <---------TOE1(3) >ZmHOX2a(2)      <-----------RAV1(1)       <------------CBF      <---------AHL20(2) <---------AHL20(2)   ctttattcagttcgttgattttgttgttgacctccaaaccatatcaaattgaaccaaaccgaaactttttaatctaagcttaaccaaataaatagggctg  17399800                                                       <---------ARR14(2)                                                       --------->ARR14(2)                                                    <---------TOE1(3)                                        <---------MYB52(1)  <------------CBF                                      <---------DEAR3(2)  <---------YAB1                    --------->ANAC46---------->ID1  <---------TOE2(3)                         <------                   <-------TEIL  <----------DOF2 ------>ZmHOX2a(1)                  <---------ICU4               <-------TEIL     <---------ANAC58--------->TOE2(3)                  --------->ICU4         ------->GAMYB --------->MYB52(1)    <-----------GT1<---------MYB52(1)   --------->YAB1 -----      --------->MYB52(1)        <---------ANAC58--------->TOE1(3)    <------------CBF       ---------   gctgaaaataaccgaaatacatacagaacggttcgcttgtcggtttttttccttaaggttccgattgctaaaattgcataatagcataatgacataaatt  17399900                                                                                <---------ARR11(3)                                                                                --------->ARR11(3)                                                                        <---------AHL20(2)                                                                        --------->ATHB12                                                                       <---------AHL20(2)                                                                       --------->AHL20(2)                                                                      <---------AHL20(2)                                                                   <---------ARR11(3)                                                                   <---------AHL20(1)                                                                   --------->ARR11(3)       <---------ICU4                                              --------->AHL20(1)    --------->YAB1      <---------ARR14(2)                         <---------AHL20(2) ------CBF              --------->ARR14(2)                         --------->AHL20(2)               - ------>GT1         --------->YAB1                            --------->AHL20(2)<---------AHL20(1)  < >AHL20(2)         ----------->GT1        *TSS      ------->TEIL  --------->AHL20(2)         <-------   gtagaataaaaatttcgcagaatgaaaatttgcaaactaaaaaatcgtcgaatgaaactaattttaaaatatattaattggatatattttgcaaaatgac  17400000                                 --------->MYB52(1)      <---------TGA1a                 <------ZmHOX2a(2)                       --------->O2                --------->ARR11(3)                       --------->TGA1a    <---------ICU4             <---------MYB52(2)        <---------O2         --------->ANAC58    <---------AHL20(2)         <---------ALFIN1     --------->ANAC58          --------->ANAC58 -------->AHL20(2)           ----------->RAV1(1)    --------->ANAC58     <---------ANAC46 ---------AHL20(2)  <---------YAB1                <------ZmHOX2a(1)--------->ATHB12  ----------->GT1 ---ID1         <---------ARR11(3)            --------->TOE1(2)   <---------ATHB12--------->MYB52(1)   aaataaatatttcaagaagatcatgagactgccacaaaccgaagaacacataggacgacacgaggcaaatgaatggctggaagcaaacagttatactgaa  17400100                                                                          <---------ANAC46>>>>>>>>>WRKY18                                                             <---------ALFIN1             <<<<<<<<<<<                                                             --------->AtMYB61        --------->ICU4                                                            --------->MYB46(3)   ----------->GT1   <-                                   ----------->HVH21      --------->AtMYB61    <---------ANAC46    <-                                <-------TEIL             --------->MYB46(3)  <---------ZAT14      <--                         --------->ARR14(2)            ------>NtERF2     <---------MYB46(3)       <--                         <---------ARR14(2)           <---------ETT(2)<------ZmHOX2a(1)<---------ICU4   ggcacaagaggtagtcaaacaaacaagaatacggttcatgacagaggttctcaatggcgaccaccaccaagaggatgggtgaagtgtaattttgacagtg  17400200  Previous    Next  AGI:  At1g47420.1    Description:  Identical to Uncharacterized protein At1g47420, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q9SX77); similar to APFI, carbonate dehydratase [Arabidopsis thaliana] (TAIR:AT1G47260.1); similar to unknown [Populus trichocarpa] (GB:ABK92861.1) Range:  from: 17397958    to: 17399695    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g47430.1    Description:  pseudogene, similar to OSJNBb0041J06.18, blastp match of 25% identity and 3.9e-10 P-value to GP|27818010|dbj|BAC55773.1||AP005176 OSJNBb0041J06.18 {Oryza sativa (japonica cultivar-group)} Range:  from: 17399942    to: 17400631    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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