Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            --------->ATHB51                                          --------->YAB1                                          --------->AHL20(2)                                          <---------AHL20(2)                                          -------->ATHB1                                         <---------ATHB12                                         <---------ATHB51                                         --------->ICU4                                       --------->WOX13(1)                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                    xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                  xxxxxxxxxxxxxxx>smallRNA(le3)                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                 <------MYB83 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 <------MYB46(1)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                <---------AtMYB61      <---------AHL20(2)                               <---------MYB52(1)   <---------AHL20(2)                              <-------GAMYB <---------YAB1                             <---------MYB46(3)     --------->AHL20(2)                           xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       --------->ANAC55(2)<---------ICU4                                <------ZmHOX2a(1)                       <---------ANAC55(2)<--------HAHB4<---------AHL20(2)              xxxxxxxxxxxxx                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      --------->AHL20(2)   <-----------GT1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  --------->ICU4  -------- --->ANAC58          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    --------->At4g35610 <---------AHL20(2) --->ANAC58        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->AHL20(2)   --------->AHL20(2)------ --ALFIN1         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->AHL20(2)    <---------AHL20(2)<-----   cattttgacaactctaatataagataagtgtccgttggtgtcaattatttttgttaaattaatagctgaatttgtcgaaaaaattatataggaaatggtg  17308600                   --------->YAB1                               <---------ANAC46                   <--------ATHB1                --------->AHL20(1)     --------->GLK1(1)         <---------YAB1    <---------AHL20(1)     <---------GLK1(1) <---------AHL20(2)        <---------ARR11(3)                ------->TEIL xxxxxxxxxx>smallRNA(si3)   <---------AHL20(2) --------->AHL20(1)                  --------->ARR14(2) --->GT1          --------->ICU4--------->ATHB51 --------->ARR11(3)               <---------CCA1(2) ----->GT1        <---------ATHB12             <---------AHL20(1)            <-----------GT1 ----ZAT6 ------>ZmHOX2a(1) <---------YAB1     <---------ARR11(3)       <---------AHL20(2)  ---------   ttaaatgaattcctagttcaatgatttttttttattattgtttagacaaaatattttcatatggtttagtggatttatttttctgtatccaaaaaaaaat  17308700                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                               ------                                                                                               ------                                                                                               <-----                                                                               --------->At4g35610                                    <----------ID1                 <---------AHL20(2)          <-----                        ----------->GT1                        <---------AHL20(2)              <-----                       ------------------------>ANAC81        --------->AHL20(2)               ------                       --------->DAG2                         <---------AHL20(2)    --------->ANAC55(2)                 <---------------AGL15                  <---------AHL20(2)     <---------At4g35610                 --------------->AGL15               <---------GLK1(2)   ---------->DOF2      <------   ----------->GT1    ---------->DOF2           <---------ARR14(2) --------->AHL20(2)         <------ >AHL20(2)      ----------------->AGL3          --------->ARR14(2) --------->AHL20(1)         <------   caaaaatgtaaaactaaacccaaaaaaagtataaaaaaaaaacaaatgcaaaaccgatttttttttaaattttttaaaagcatctcacttaattccgaat  17308800                                           ------>ZmHOX2a(1) ----->TOE2(3)                            --------->TOE1(3) ----->YAB1                         --------->AHL20(2) ----->TOE1(3)                      <---------AHL20(2) ->TEIL  ----------->GT1            --------->ATHB51 --->GLK1(2)                        <--------ATHB1              <---------WOX13(1)    ----------->GT1 ----ARR14(2)                       <---------ICU4            --------->ATHB12        <---------ANAC55(2) ------ARR10                       <---------ATHB51       --------->ATHB12      --------->AHL20(2) ----ARR11(1)                      --------->ICU4 ---------->DOF2               <---------AHL20(2)  < --->ARR14(2)                      <---------ATHB12      <-------TEIL         <----------DOF2       - ---GLK1(2)                 --------->MYB46(3)  <---------AHL20(2)      <-----------GT1      -------- ---CCA1(2)             <---------ATHB12  --------->TOE2(3) <---------WOX13(1)--------->TOE2(3)     < ---ARR14(1)     <----------ID1  --------->YAB1 --------->AHL20(2) <---------YAB1   <---------AHL20(2)   cttaaccaaaaccgaaaaaaaaacaaatcaactactaataatttccttaattaaaagcattcattgattgttattttcatctttaattaagtgaataaaa  17308900                                                                 <---------AHL20(2)                                                           --------->LBD16                                                           ------>NtERF2                                                           <---------RAP2.6(3)                                                          --------->DEAR3(1)                                                          <---------ATERF1(2)                                                          --------->RAP2.6(2)           <---------------AGL15                          --------->ATERF1(2)      <---------WOX13(1)                                  --------->RAP2.3(3)    --------->YAB1                                        --------->RRTF1(2)    <--------ATHB1                                        --------->RAP2.3(2)    -------->HAHB4                                        --------->RRTF1(3)    <---------ICU4                                        --------->DREB2C(2)    --------->ATHB12                                      --------->ANAC46   --------->ICU4                                        --------->RAP2.3(1)   <---------YAB1                                        --------->ERF1 <---------ICU4                                          --------->MYB46(3) --------->YAB1                                         <---------At4g35610 ---------ATHB12             <---------DAG2   ----------->GT1    --------->AHL20(2) -------->ICU4               <----------DOF2  <----------ID1<------NtERF2                 ---------->DOF2 ->AHL20(2)--------------->AGL15           ---------->DOF2------->GAMYB          --------->ARR14(2) ---------ATHB51    <------ZmHOX2a(1) ----------->GT1   --------->At4g35610     <---------GLK1(1)<---   caataatgattgtctaaatataggagtgaaactttttgaagggtaaaaaggagaaaacagccgccaaataaatgtggaaatgaaatctgcaaaaaagccc  17309000                                                                                --------->TOE2(3)                                                                              --------->ARR11(3)                                                                              <---------ARR11(3)              ---------->DOF2                                           <---------MYB59             <       --------->ARR14(2)                  ----------->GT1           <---------WRKY18(1)    ---------       <---------ARR14(2)                 ----------->GT1           ----------->HVH21      --------->HSFB2a(2) ------ALFIN1 *TSS             <---------ICU4              ---------->DOF2   --------->RVE1(1)-------   caaattttggatactcaaaagtcaaatccctaaaaatttcgaaatcggaaaatttacacagagaagcgccatgacctaaaaatctcaaaacttccccaac  17309100                                      --------------->AtSPL8                                     --------------------->WRI1                                   ------>MYB83                                   -------->P                                   ------>MYB46(1)                                  --------->MYB55(1)                                 <---------MYB111(2)                                          <------NtERF2                                 <---------MYB111(1)        <---------CCA1(2)                --------        <---------DAG2           <---------MYB46(2) <----------DOF2                         <-------- ---------ICU4                   <---------MYB59    <---------DAG2  <----------DOF2        <---------LBD16 >LBD16 <----------DOF2    <----------DOF2         <---------DAG2   <---------DAG2   ------->GAMYB  - ---->RAV1(1)--------->ANAC46 <-----------GT1 <-----------GT1<-----------ARR10    <-----------GT1 ---   aaaaatggcgcttttactcaacccatttccttttacctaccttgtacattaccccttttctcaaatctcactttcccactgaaataaccccatggcggag  17309200                                       ---------->DOF2                              <------NtERF2                              --------->RAP2.3(1)                             ------>NtERF2                             <---------ERF1                             <---------ATERF1(1)                             <---------DEAR4(2)                             <---------RAP2.3(1)                             <---------ORA47(2)                            --------->DEAR3(1)                            <---------DEAR3(1)                            <---------ATERF1(2)                            --------->ATERF1(2)                            <---------RAP2.3(3)                            <---------RAP2.3(2)                            <---------ANAC46                           --------->RAP2.3(1)                           --------->ATERF1(1)                           <------NtERF2--------->DAG2                           <---------ABI4(1)                          <---------RAP2.3(1)                          <---------ATERF1(1)                          <---------DEAR4(2)                         <---------DEAR3(1)                   --------->ANAC46                      - ->LBD16                <---------At4g35610            <---------ANAC46                             < -ANAC46                --------->At4g35610   --------->DEAR3(1)                              ------- -------->YAB1<------ZmHOX2a(1)     --------->ANAC58   <---------ANAC58                       <------ ------>GLK1(2) ----------->TGA1    --------->ANAC58   <---------ANAC58  <---------MYB52(1)   <------   aatcagaactgtgcgaggatgacgagagcggcggcgaaacgaaaagcgtcgtccatggcgttagacgaaaacccagttagtaagaagagagttgttctcg  17309300                                          ---------->DOF2                                        --------->ANAC58                                   --------->WOX13(1)                                 --------------->AGL15                                 <---------------AGL15                                 <---------MYB59                                 --------->MYB46(3)                                ----------------->AGL2                                ----------------->AG                                --------->ANAC58                                --------->ANAC46         --------->ARR14(2)     ----------------->AGL1       --------->LBD16          --------->ANAC58 <---------At4g35610           ------->TEIL --------->At4g35610         <---------SPL7 -------->ARR11(3)         --------------->AtSPL3                     <---------ZAT6 ---------ARR11(3)     <-------GAMYB <---------ATHB12                 ----------->GT1 -->HSFB2a(2)         <---------ANAC58  --------->ANAC58 <---------TOE1(3)                 <---------At4g35610 ---HSFB2a(2)         <---------ANAC58--------->YAB1     <---------TOE2(3)                 --------->At4g35610 ---LBD16<---------ARR14(2)--------------->AtSPL8       ---------->DOF2                  <-----------RAV1(2)   gagagcttccgaatatgtccaatgtcgttgctgtacccaatcaagaaagagagacccttaaggctaaaacaagtgttaatacctcgaagaggcagatgaa  17309400                                                       <-----------RAV1(2)                                                      ------>ZmHOX2a(1)                                                     --------->TOE2(3)                                                    ------>ZmHOX2a(2)                                             ======================RAV                                             <-----------RAV1(1)                                            =================HOX2a_HOX2a                                            ------>ZmHOX2a(2)                         <---------ZAT14   ==================HOX2a_HOX2a                         --------->ZAT14   <------ZmHOX2a(2)                         <---------ZAT18  --------->ARR11(3)               ===================================HOX2a_HOX2a               ------>ZmHOX2a(1)          <---------ARR14(2)              <---------ANAC58         --               ====================================HOX2a_HOX2a            <---------ANAC58        ---             ----------->RAV1(2)          --------->ARR14(2)         <----------DOF2             <---         <---------ICU4  --------->ZAT18  <---------AGP1 --------->At4g35610               <---------CCA1(2)        <---------YAB1   <---------SPL7   --------->AGP1 <---------At4g35610             <---------ANAC58      --------->YAB1    <---------ANAC58  <---------ARR11(3)        <---------DAG2       <---------ANAC58   <----------DOF2      <---------ANAC58 <---------GLK1(1)   --------->ALFIN1 <---------ZAT6    <----   gaaggctttgatgattcctgaagctagcgtactaatcgaatcgagatctgttgatcctcagatgtgtgagccttttgctagtgatatttgtgcttatctc  17309500  Previous    Next  AGI:  At1g47230.1    Description:  CYCA3;4; cyclin-dependent protein kinase regulator. Identical to Cyclin-A3-4 (CYCA3-4) [Arabidopsis Thaliana] (GB:Q3ECW2;GB:Q9C6B1); similar to CYCA3,2, cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT1G47210.2); similar to cyclin-dependent protein kinase regulator-like protein [Brassica rapa] (GB:ABB97043.1); contains InterPro domain G2/mitotic-specific cyclin A (InterPro:IPR015453); contains InterPro domain Cyclin (InterPro:IPR006670); contains InterPro domain Cyclin-related (InterPro:IPR013763); contains InterPro domain Cyclin, A/B/D/E (InterPro:IPR014400); contains InterPro domain Cyclin, N-terminal (InterPro:IPR006671); c Range:  from: 17309014    to: 17311288    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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