Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                -----                                                                                                <----                                                                                               ------                --------->TOE2(3)                                                             <------                --------->TOE1(3)                   ----------->GT1                        --------->AHL20(1)       <---------AHL20(2)                       <---------ARR11(3)                         <---------AHL20(1)       --------->AHL20(2)                       --------->ARR11(3)                         <---------AHL20(2)  <---------AHL20(1)                          <---------YAB1                            --------->AHL20(2)  --------->AHL20(1)                          --------->ICU4     <---------------AtSPL8 <---------AHL20(1)  --------->AHL20(2)                    --------->DAG2           --------------->AtSPL8 --------->AHL20(1)  <---------AHL20(2)                   ---------->DOF2   ---------->DOF2               <---------AHL20(2) --------->AHL20(2)            --------->MYB52(2) ------>ZmHOX2a(2)        <-----------GT1 --------->AHL20(2)   aaattttatttaaaaaaaccctaaaaaactagttagttttaaaaagtcatgatcttgtttaaagaaaattgtacatttaacaattctaaatattttatta  17303000                                                                                    --------->AHL20(2)                            --------->YAB1                                    --------->TOE2(3)                ----------->GT1                                         <-----------GT1    --------->AHL20(2)               <-----------------------TaNAC69(2)                    <---------ICU4 --------->YAB1      <---------TOE2(3)     <-----------GT1                         <---------AHL20(1)  <---------AHL20(2) -------->AHL20(2)       --------->RVE1(1)                          <---------ARR11(3) --------->AHL20(2) ---->AHL20(2) --------->DAG2      <----------DOF2                  --------->AHL20(2) <---------AHL20(2) -----AHL20(2) <---------------AtSPL8                               --------->AHL20(1)<---------YAB1 --->AHL20(2)  --------------->AtSPL8  <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     --------->YAB1     ---- ---YAB1      ---------->DOF2   --------->GLK1(2)          ---------->DOF2    >>>>>>>>>RAP2.2<-------   aaaaatataagattagtaaagtacaaaatatcacaatctttttttttttttttttttttgtcaaagacaaaatattacaatctaaattataaatttaaca  17303100                                                        --------->ANAC58         --------->WRKY18(1)                                                        --------->ANAC58        <-----------HVH21                                                      <---------ALFIN1     <-----------GT1                                                      --------->AtMYB61  <----------DOF2        -----                    <-----------HVH21              --------->AtMYB61    <---------ICU4          ----- ----->At4g35610   ----------->GT1                --------->MYB46(3)    --------->YAB1          ----- ----GT1  <----------ID1<<<<<<<<<<<<WRKY18        <---------MYB55(2)   <---------ATHB12         -----   gatgtcttcgaagggacaaaaatgtcaaatgtcaaatttgtttctgaatcgaaccaccacggccaaaaccccaatctttaccggtcaaaaacattttcag  17303200                               ------>NtERF2                               --------->LBD16                              --------->ANAC46                              --------->ANAC58                              ------->GAMYB       XXXXXXXXXXXXXXXXXXXX>MIR863-3P                      ------->TEIL  --------->GLK1(2)           --------->DEAR3(1)          <---------ALFIN1    --------->WRKY38(1)  <---------ARR11(3)          --------->ANAC58      --------->HSFB2a(1)       <---------ZAT18  --------->ARR14(2)         <---------MYB55(2)     <---------HSFB2a(1)       --------->WRKY12 ---->ANAC58                 --------->MYB46(3)     --------->HSFC1(2)      <---------At4g35610 ---->ANAC58              <-----------GT1           <---------HSFC1(2)--------->AHL20(1) ---->ANAC46          ---------->DOF2              <-----------ARR10  --------->AHL20(2) ---->AtLEC2        --------->TOE2(3)              <---------KAN4(2)  <---------AHL20(2)   gcaaaatctgaaaacaaaaaaacataaatcacccgcccaaacaaatttcagagaattttcgcacctccaaaattttttagttgactcccaaaaaactcaa  17303300                             ----------->GT1                            --------->YAB1                      ----------->RAV1(1)                                                          --                   --------->ANAC58                                                                ==                   --------->ANAC58                     <----------DOF2                           <--                  --------->ZAT18                       <---------DAG2                     *TSS   ===               ---------->DOF2             <----------DOF2                 <---------DAG2 <---------ATHB12     --------->AHL20(2)------------>CBF    <---------DAG2               <-----------GT1  --------->ANAC46   actccaaaaaaatcacagagagcgccacaatcagaaaaaatggcgcttttgctcttccctttttcttccccttctcaccttctcttcttccactcatccg  17303400                                                                                                   <-                                                                                                  ---                                                                                              -------                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                         ------>ZmHOX2a(2)                                                                                        --------->CCA1(2)                                                                                        <------ZmHOX2a(2)                                                                                       --------->AGP1                                                                         <---------YAB1--------->ARR14(2)                                                                       --------->YAB1  --------->ARR14(3)              <---------CCA1(2)                                        <---------ICU4  <---------ARR11(3)         ------>ZmHOX2a(1)                                            --------->ICU4   --------->ARR11(3) ---->ZmHOX2a(2)                                                      <---------ATHB12 <---------ARR14(2) ===============HOX2a_HOX2a                                         --------->WOX13(1)<---------GLK1(1) ----ZmHOX2a(2)  --------->TOE2(3)  <---------ATHB12            --------->At4g35610   --------->GLK1(1) ===============HOX2a_HOX2a       --------->ANAC46              <---------At4g35610  ----------->ARR10   atctctcaatcctctcaaatctcaaactctctcttcccatcactctctcgctctctcttcaatctcatctcaatcatgacagagcaagagatctgcgtga  17303500                          --------->HSFC1(2)                       ---------->DOF2                    --------->ANAC58                    --------->ANAC58              --------->RAP2.3(1)              <------NtERF2             <---------DEAR4(2)             <---------ATERF1(1)             ------>NtERF2<---------HSFC1(2)             <---------RAP2.3(1)             <---------ERF1            <---------RAP2.3(3)            <---------ATERF1(2)            --------->DEAR3(1)            <---------RAP2.3(2)            --------->ATERF1(2)                              <---------WRKY12            <---------DEAR3(1)                               <---------WRKY38(1)           --------->ATERF1(1)                          ------>ZmHOX2a(2)           <---------ABI4(1)                          <---------ARR14(2)           --------->RAP2.3(1)                ----------->HVH21           <------NtERF2--------->DAG2  <---------MYB46(3)  --------->WRKY18(1) ------GAMYB<---------ANAC46           <---------ANAC46<------ZmHOX2a(2) -------->GT1<---------ORA47(2)     <---------DEAR3(1)--------->ARR14(2) -->ALFIN1<---------DEAR4(2)       <------NtERF2     --------->GLK1(1)                           ---- -ANAC58  <---------RAP2.3(1)     ------>NtERF2  <---------ANAC46                       <---------At4g35610 -ANAC46  <---------ATERF1(1)    <---------DEAR3(1)  <---------GLK1(1)                  --------->At4g35610 -ANAC58 <---------DEAR3(1)   ----------->HVH21 <---------LBD16                  <---------HSFB2a(2)   gggttacaagagcggcggcgaaacgaaaagcttcgacggcgatgggtattgacggagatcgggtcaacaagaagagagttgttctcggtgagcttctaaa  17303600                                                                --------->TOE1(3)                                                                --------->YAB1                                                              --------->GLK1(2)<---------------------WRI1                                     ---------->DOF2         <---------GLK1(2)--------->LBD16       <                                 --------->At4g35610     --------->DAG2       ------>NtERF2       <--                               --------->YAB1           ---------->DOF2      <---------DEAR3(1)  ----                              <---------ATHB12    --------->ANAC58          <---------LBD16      <---          --------->WOX13(1)--------->WOX13(1)    --------->ANAC58         ------>ZmHOX2a(1)     ---- ----->ANAC46            --------->TOE2(3)      ---------->DOF2 --------->TOE2(3)                <---   cgtctccaatgtcaatctcttggctaatctcaatcagaagaaagaaacccagaagccaaaaaggaatcttaaacctcctccggcgaaacagattaagtca  17303700           -------->ATHB1                                  ------>ZmHOX2a(1)          <---------YAB1                                  --------->TOE2(3)          --------->ICU4                               --------->ARR14(2)                        <---      <------NtERF2                                    --------->ARR11(3)                        <---     <---------MYB46(3)                                <---------ARR11(3)                        ----     ------>NtERF2                                     <---------ARR14(2)                        <---   <---------MYB52(1)                                <---------YAB1                              ----  --------->LBD16                                ------>ZmHOX2a(2)                     --------->ARR11(3) ---------LBD16                             <---------HSFB2a(2)          <---------DAG2<---------ARR11(3) -------ARR14(2)             --------->ARR14(2)--------->ARR14(2)      ------->TEIL   --------->GLK1(1) ----->ZAT2--------->ATHB12  --------->GLK1(2) <---------ARR14(2) <---------ANAC46    <---------CCA1(2) ------ZAT2--------->ATHB51  <---------ARR11(3)<---------AGP1     --------->ALFIN1<---------ANAC46 ----->At4g35610         --------->YAB1 <---------GLK1(2)------>ZmHOX2a(2)       <---------At4g35610 ------At4g35610 -------->ZAP1  ----------->HVH21=================HOX2a_HOX2a<-----------RAV1(1) ----   gctccggtggctattattgacctagaatcaaaatctgacattgattctcgatctgatgatcctcaaatgtgtggaccttatgttgctgatatctatgagt  17303800                         ------>ZmHOX2a(2)                       --------->ARR11(3)                       <---------ARR11(3)                                           <------MYB83             ----------->GT1                                                    <---------ARR14(2)            <---------TOE2(3)                                          ------>ZmHOX2a(2)        -----     <---------WRKY12 --------->YAB1                                  <---------At4g35610       <---- ------ARR14(2)      --------->ICU4                                   --------->At4g35610     <------ --------ARR10     --------->YAB1                          <-----------------AGL3   <------MYB46(1) ----->GLK1(2)     <---------ICU4                        --------->ARR11(3)     --------->ARR14(2) -- ------ARR11(3)    -------->HAHB4                 <---------AHL20(2) <---------ARR14(2)       ------- ----->ARR14(2)   --------->ICU4              --------->ATHB12       --------->ARR14(2)     <-------- ----->ARR11(3)   <---------ATHB51            <--------HAHB4         <---------AGP1 ----------->GT1--   atcttcgtcaacttgaggtaataatgatcttgtgttttggatttagaatcatttacttagttcttgaattggatctgaattggatttggtgaattcaggt  17303900  Previous    Next  AGI:  At1g47210.1    Description:  CYCA3;2; cyclin-dependent protein kinase. Identical to Cyclin-A3-2 (CYCA3-2) [Arabidopsis Thaliana] (GB:Q9C6A9;GB:Q9C625); similar to CYCA3,3 (CYCLIN A3,3), cyclin-dependent protein kinase regulator [Arabidopsis thaliana] (TAIR:AT1G47220.1); similar to cyclin-dependent protein kinase regulator-like protein [Brassica rapa] (GB:ABB97043.1); contains InterPro domain G2/mitotic-specific cyclin A (InterPro:IPR015453); contains InterPro domain Cyclin-related (InterPro:IPR013763); contains InterPro domain Cyclin, A/B/D/E (InterPro:IPR014400); contains InterPro domain Cyclin, N-terminal (InterPro:IPR006671); contains InterPro domain Cyclin-like (Int Range:  from: 17303391    to: 17305265    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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