Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   <---------ARR11(3)                                                                               --------->ANAC58                                                                          --------->ANAC58                             ------>ZmHOX2a(1)                            --------->ANAC46                           <---------ICU4                            <---------At4g35610                 --------->ARR14(3)                                  <---------ZAT2                 <---------ARR14(3)                                  --------->At4g35610                 --------->ARR11(3)                                <---------ZAT18                 <---------ARR14(2)                              <-----------HVH21     --------->At4g35610                --------->CCA1(1)                          ------>MYB83----------->HVH21     --------->MYB46(3)  <---------ARR14(2)              <---------MYB59--------->MYB52(1)   --------->ARR14(2)    --------->ARR14(2)      --------->RAP2.6(2) --------->ZAT2   <---------TOE1(3) --------->ANAC58--------->ARR14(2)         ---------->DOF2------>MYB46(1)--------->ANAC58 --------->ANAC58<---------ARR11(3)      <---------At4g35610  <---------------------WRI1--------->TOE1(3) ----->YAB1     --------->RVE1(1)        --------->At4g35610--------->REM1(1)  --------->ANAC58   cacaagaaccacaagagaatatcttcaaatccttacaattctcagcaaaagcagccatacctacatcggtgagctcacggcaagctctaagcttaagtct  17279700                                                          ------>ZmHOX2a(2)                        ------>ZmHOX2a(2)                --------->CCA1(2)                       <------ZmHOX2a(2)                 <------ZmHOX2a(2)                      --------->ARR11(3)                --------->AGP1                      --------->AGP1                    <---------AGP1                      <---------ARR11(3)                --------->ARR11(3)                     --------->GLK1(1)                  <-----------ARR10                 ------->GAMYB                     <---------GLK1(1)        <---------ARR14(2)                         --------->ANAC55(2)              --------->LBD16                 --------->ARR14(2)                         --------->ANAC58            <---------LBD16                <------NtERF2<---------ARR11(3)               <---------ANAC55(2)          --------->REM1(1)              <---------DEAR3(1)      ------>ZmHOX2a(2)      >>>>>>>>>MYB98          <---------ALFIN1             <-----------HVH21<---------ARR14(2)   ---------->DOF2        ======================HOX2a_HOX2a--------->DEAR3(1)     <------ZmHOX2a(2)      --------->MYB52(1)        =======================HOX2a_HOX2a------>NtERF2 --------->ARR14(2)  ------->GAMYB--------->ANAC58        ------>ZmHOX2a(1)           <----------DOF2--------->MYB52(1)      --------->ANAC46   cttcaaattcctacaccggagagagatcttaacaagcgcttcgtcgccgatactaacagatctacgatcgcatttcaacgaaagcttagtaacggaatcg  17279800                                             --------->ALFIN1                                           <---------ANAC46                                           <---------ANAC58                                   ------>NtERF2                                  ------>ZmHOX2a(2)                                       ------->GAMYB                                 --------->CCA1(2)                                        --------->At1g77200                                 <------ZmHOX2a(2)                                        --------->DEAR3(1)                                <-----------ARR10                                         --------->DREB2C(2)                                <---------ARR11(3)                                       --------->DEAR3(2)                                --------->AGP1                    --------->GLK1(2)      --------->MYB46(3)                                <---------ARR14(2)           <---------DOF5.7(2)      --------->MYB46(3)                                --------->ARR14(2)         --------->DOF5.7(2)   --------->ARR11(3)                                <---------AGP1--------->REM1(2)  <---------GLK1(2)<------ZmHOX2a(2)                                --------->ARR11(3)        ----------->GT1 ------>ZmHOX2a(1)  <-------                               <---------CCA1(2)    ---------->DOF2       ===============HOX2a_HOX2a                             --------->YAB1<---------ANAC58--------->At5g28300   <---------ARR11(3)   aatcgagagaagagagaaggaatcgaagtaatcagatctgagcgagcgtggagagaaagacggtaacgattctgtccttcgacgatcatccaccgacgac  17279900                                                                 <---------ANAC55(2)                                                                 --------->At4g35610                                                                 ----------->GT1                                                             <-----------TGA1                                                             <-----------HVH21                                                            --------->TGA1a                                                            --------->O2                                                      --------->ANAC58     --------->ZAT14     --------->LBD16       ---------->DOF2<---------MYB52(1)         ----------->GT1     <---------ZAT14   <---------LBD16         =======================bZIP_DOF --------->ZAT14     <---------ZAT18  --------->MYB52(1)      --------->AtMYB61<-----------RAV1(2)  <-----------RAV1(2) --ETT(2)   <----------DOF2        --------->ARR11(3) --------->ANAC58        --------->ALFIN1   aaaccagagcacatcttttccgattaccggagtttaagaactggaacaccaaagctaagcactcgtcaggtaaactcgatgtgtagtcaggttgtgaaat  17280000                                                                                   <--------P                                                                                  <-------GAMYB                                                                                 <---------MYB46(3)                                                                                <---------AtMYB61                                                                               <------NtERF2                                                                             <---------ANAC46                                                                             <---------DEAR3(1)                                                                            <------NtERF2                                                                            <---------ABI4(1)                                                                            <---------LBD16                                                                            --------->At4g35610                                                                            <---------At4g35610                                                                            --------->ATERF1(1)                                                                           <---------ERF1                                                                           ------>NtERF2                                                                           <---------ORA47(2)                                                                           <---------RAP2.3(1)                                                                           <---------DEAR4(2)                                                                           <---------RAP2.6(1)                                                                           <---------RRTF1(1)                                                                          <---------RRTF1(3)                                                                          <---------RAP2.3(3)                                                                          <---------RRTF1(2)                                                                          <---------RAP2.3(2)                                                                          <---------ATERF1(2)                                                                          <---------DEAR3(1)                                                                          --------->DEAR3(1)                                                                          --------->ATERF1(2)                                                                         --------->ATERF1(1)                                                                         <---------ABI4(1)                                                                        <---------ATERF1(1)                                                                        ------>NtERF2                                                                        --------->LBD16                                                                        <---------RAP2.3(1)                                                                       <---------RAP2.3(2)                                                                       <---------LBD16                                                                       <---------RAP2.6(2)         --                                                                      <---------LBD16--------->ATHB12                                                                    <---------ARR14(2) <---------WOX13(1)        <---------WOX13(1)                                          --------->ARR14(2)<---------ANAC58    <-------TEIL  <---------LBD16                  <------NtERF2   --------->GLK1(1) <---------MYB46(3)   --------->ARR14(1)                      <---------ANAC58        <---------HSFB2a(1)<---------ANAC58  <---------ARR14(2)                       <---------ANAC58 <------ZmHOX2a(1)--------->ALFIN1      --  --------->ARR14(2)              <---------DOF5.7(2)     <---------TOE2(3)<---------ATERF1(1)     --  <---------GLK1(2)           <---------ZAT6     <---------DEAR3(1)<---------GLK1(1)<-------TEIL  ---   ctcagattcgattgattcaatcgggaatttcagtgtaaacgatttgcttcgtcgtcgattgaggatggaatttccggcggcggaggttgattggcccatc  17280100                                 <------NtERF2                                 ------>NtERF2                                --------->LBD16                                ------>NtERF2                                <---------RAP2.3(1)                              <---------At4g35610                              <---------LBD16                              --------->At4g35610                      <---------DEAR3(1)                                        <---------MYB52(1)            <---------AtMYB61<-----------RAV1(1)                                <--------P            --------->ALFIN1<---------DEAR3(1)                                 <-------GAMYB       <<           <---------MYB52(1)<---------ATERF1(1)                              <---------DEAR3(2)  <--          --------->LBD16  ----------->RAV1(2)                                <---------MYB46(3)  <--        <---------LBD16 <------NtERF2        --------->GLK1(2)               --------->ETT(1)     <-- ---------->DOF2     <------NtERF2  <------NtERF2                            <---------DREB2C(2) <--- ------->ANAC58    <---------DEAR3(1)    <------ZmHOX2a(1)                  ---------->ID1      <---- ------->ANAC58   <------NtERF2<---------RAP2.3(2)                        <-----------RAV1(1)  <----- ------->ANAC46 <---------DEAR3(1)<---------ANAC46                <------------CBF      <XXXXXXXXXXXX ------>LBD16<---------MYB46(3)<---------DEAR3(1)<---------YAB1 --------->ARR11(3)--------->MYB52(2)   cacgaaagtctccggtggtcgtcgtcgtcgtctgcggcgtagaggagaattttgatttcgattttggatattgattttgtcggttagtgagtttgagcgt  17280200          --------->DAG2          <---------TOE1(3)     <---------TOE2(3)   ---------->DOF2                                                                                <-- <<<<<<<<MYB80                                                                           --------->AHL20(2) ----MYB46(1)                                                                        <---------AHL20(2) ----MYB83<---------AtMYB61                                             <------------CBF<---------AHL20(2) -------MYB46(3)                         <---------ANAC58         <---------ANAC46   --------->AHL20(2) ------AtMYB61                           <---------ANAC58  <---------ARR11(3)       <---------AHL20(2) -----MYB52(1)----------->GT1            <---------ANAC46  --------->ARR11(3)    --------->AHL20(2)<- --GAMYB  <---------TOE2(3)           <---------MYB52(1)   <---------GLK1(2)    <---------YAB1   ---- XXXXXXXXMIR403                     <-----------RAV1(1)  <---------TOE2(3)----------->GT1<---------AHL20(2)   tggtttaaaggtaaggttgtgaaattagtttgtggaaactgttgcttacagttttcatttagatttttgagtgaaattgtttattatttatttatttttc  17280300                                                                                                -----                                                                                        <---------ARR14(2)                                                                                        --------->ARR14(2)                                                                                        <---------ARR11(1)                                                                                       <---------CCA1(2)                                                                                     <---------ANAC58                                                                                     <---------ANAC46        <---------MYB52(1)            <---------ANAC58                               <---------ANAC58      <---------YAB1                  <---------ANAC58              <---------ARR11(3)<---------SPL7 -----GAMYB                     <---------AHL20(2)             ------------>CBF     --------------->AtSPL3 --------MYB52(1)              --------->AHL20(2)             <-----------GT1  <-----------RAV1(1) ------->GT1    ----------->HVH21 <------------CBF      <---------TOE2(3)    <----------DOF2    <----   ggttaattctgtttgtttgtgacattttagttataaaattgtttgtcatttgttttttaagttttaacaatatgtttctctttgttgccgtatccattct  17280400                                                       <---------MYB52(1)                                          <---------ARR14(2)                                          <---------ARR11(3)                               <---------HSFB2a(2)    --------->TOE2(3)                           <---------GLK1(1)         ----------->GT1                 <---------ARR11(3)       --------->ARR14(2)                 --------->ARR11(3)       --------->ARR11(3)              <----------DOF2            <---------TOE2(3)  --------->HSFB2a(2)  <---------ATHB12   <-----------GT1        --------->At4g35610--------->GLK1(1)  ------>ZmHOX2a(1)      <----------DOF2 ---->HSFB2a(2)  <---------AHL20(1)      --------->RVE1(1)        <-----------GT1 -----HSFB2a(2)  --------->AHL20(1)    --------->AHL20(2)   <---------AHL20(2)     <---------YAB1  --   agagaaaataagctaagaatattttagggatttctacaaaaaaaaatcctccaaatcgttattttttttaactttactttccattttgatattttttata  17280500                                                                             <---------ARR11(3)    <---------ANAC55(2)   --------->AHL20(2)                        <---------ARR11(1)    --------->ANAC55(2)--------->ANAC55(2)                          <---------ARR11(3)--------->ARR11(3)  --------->YAB1       <---------ANAC55(2)  --------->ARR11(3)      --------->ARR11(3)<---------ARR11(3)  <---------ICU4--------->YAB1 <-----------GT1         --------->AHL20(2)    --------->ARR11(3)     < <---------ATHB12--------->AHL20(2)         <---------ARR11(3)     <---------CCA1(2) <---------CCA1(2) ------->WOX13(1)--------->AHL20(1)        <---------CCA1(2)  ----------->GT1<---------GLK1(2)  -----   tcaatcatgtgatataaaaaataatacataatataactctcatacatatctcaaaaaaaaaatatggtcatatcttatagattttgtatatctcgcataa  17280600  Previous    Next  AGI:  At1g47056.1    Description:  VFB1 (VIER F-BOX PROTEINE 1); ubiquitin-protein ligase. Identical to Putative F-box protein At1g47056 [Arabidopsis Thaliana] (GB:Q9C626); similar to VFB3 (VIER F-BOX PROTEINE 3), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT4G07400.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABD32619.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 17278543    to: 17280099    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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